A B C D E F G H I J K L M N O P Q R S T U V W X Z

A

AboutAction - class gov.nih.nlm.mms.AboutAction.
This class is used for the Help->About menu of the MetamorphoSysGUI.
AboutAction(String, Frame) - Constructor for class gov.nih.nlm.mms.AboutAction
Instantiates an AboutAction.
AbstractConceptView - class gov.nih.nlm.mms.browser.AbstractConceptView.
This is an abstract implementation of the ConceptView interface.
AbstractConceptView() - Constructor for class gov.nih.nlm.mms.browser.AbstractConceptView
 
AbstractExpandedForm - class gov.nih.nlm.umls.meta.AbstractExpandedForm.
Abstract implementation of ExpandedForm providing equals, hashCode, toString, and compareTo methods to any descendents.
AbstractExpandedForm() - Constructor for class gov.nih.nlm.umls.meta.AbstractExpandedForm
 
AbstractFilter - class gov.nih.nlm.mms.filters.AbstractFilter.
This is an abstract implementation of the filter class that manages the mechanisms for handling data changes.
AbstractFilter() - Constructor for class gov.nih.nlm.mms.filters.AbstractFilter
 
AbstractFinder - class gov.nih.nlm.mms.browser.AbstractFinder.
Abstract implementation of the Finder interface.
AbstractFinder() - Constructor for class gov.nih.nlm.mms.browser.AbstractFinder
Instantiates a WordSearchFinder.
AdditionalRelationshipLabel - class gov.nih.nlm.umls.meta.AdditionalRelationshipLabel.
Represents an additional relationship label value.
AdditionalRelationshipLabel() - Constructor for class gov.nih.nlm.umls.meta.AdditionalRelationshipLabel
Instantiates an empty AdditionalRelationshipLabel.
AdvancedOptionsAction - class gov.nih.nlm.mms.AdvancedOptionsAction.
Action used for an application level options menu item.
AdvancedOptionsAction(UserConfiguration) - Constructor for class gov.nih.nlm.mms.AdvancedOptionsAction
Instantiates an action for the Options->MetamorphoSys Options menu.
AdvancedOptionsGUI - class gov.nih.nlm.mms.AdvancedOptionsGUI.
This dialog is used to configure the application level parameters.
AdvancedOptionsGUI(UserConfiguration) - Constructor for class gov.nih.nlm.mms.AdvancedOptionsGUI
Instantiates a AdvancedOptionsGUI from the specified UserConfiguration.
ApplicationConfiguration - class gov.nih.nlm.mms.ApplicationConfiguration.
Represents all application-level configuration data.
ApplicationConfiguration(File) - Constructor for class gov.nih.nlm.mms.ApplicationConfiguration
Constructs an ApplicationConfiguration from the specified properties file.
ApplicationConfiguration(Properties) - Constructor for class gov.nih.nlm.mms.ApplicationConfiguration
Constructs an ApplicationConfiguration from the specified Properties.
Atom - interface gov.nih.nlm.umls.meta.Atom.
Represents information about a single named unit of meaning within a Concept.
Atom.AtomRankComparator - class gov.nih.nlm.umls.meta.Atom.AtomRankComparator.
Sorts the atoms.
Atom.AtomRankComparator(Atom[], SourceTermType[], boolean, boolean, boolean) - Constructor for class gov.nih.nlm.umls.meta.Atom.AtomRankComparator
Constructor
Atom.ByLanguageRestrictor - class gov.nih.nlm.umls.meta.Atom.ByLanguageRestrictor.
Restrictor that restricts by Language.
Atom.ByLanguageRestrictor(Language[]) - Constructor for class gov.nih.nlm.umls.meta.Atom.ByLanguageRestrictor
Constructor Keep only languages given as parameter.
AtomAttribute - interface gov.nih.nlm.umls.meta.AtomAttribute.
Represents information about an attribute attached to an Atom.
AtomAttributeImpl - class gov.nih.nlm.umls.meta.impl.AtomAttributeImpl.
Implementation of the AtomAttribute interface.
AtomAttributeImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.AtomAttributeImpl
Instantiate an empty AtomAttribute.
AtomAttributeImpl(AtomAttribute) - Constructor for class gov.nih.nlm.umls.meta.impl.AtomAttributeImpl
This is a copy constructor for AtomAttribute.
AtomCoocurrence - interface gov.nih.nlm.umls.meta.AtomCoocurrence.
Represents a coocurrence between two Atoms.
AtomCoocurrenceImpl - class gov.nih.nlm.umls.meta.impl.AtomCoocurrenceImpl.
Default implementation of the Coocurrence interface.
AtomCoocurrenceImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.AtomCoocurrenceImpl
Instantiates an empty AtomCoocurrence.
AtomCoocurrenceImpl(AtomCoocurrence) - Constructor for class gov.nih.nlm.umls.meta.impl.AtomCoocurrenceImpl
Instantiates an AtomCoocurrence from the specified AtomCoocurrence.
AtomElement - interface gov.nih.nlm.umls.meta.AtomElement.
Represents information about a data element connected to an Atom.
AtomElement.ByLanguageRestrictor - class gov.nih.nlm.umls.meta.AtomElement.ByLanguageRestrictor.
Restrictor that restricts by Language.
AtomElement.ByLanguageRestrictor(Language[]) - Constructor for class gov.nih.nlm.umls.meta.AtomElement.ByLanguageRestrictor
Constructor Keep only languages given as parameter.
AtomElement.BySourceRestrictor - class gov.nih.nlm.umls.meta.AtomElement.BySourceRestrictor.
Restrictor that restricts by Source.
AtomElement.BySourceRestrictor(Source[]) - Constructor for class gov.nih.nlm.umls.meta.AtomElement.BySourceRestrictor
Constructor Keep only sources given as parameter.
AtomImpl - class gov.nih.nlm.umls.meta.impl.AtomImpl.
Default implementation of the Atom interface.
AtomImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.AtomImpl
Instantiates an empty Atom.
AtomImpl(Atom) - Constructor for class gov.nih.nlm.umls.meta.impl.AtomImpl
Instantiates an Atom from the specified Atom.
AtomMapping - interface gov.nih.nlm.umls.meta.AtomMapping.
Represents a mapping for a between two UMLS Atom identifiers.
AtomMappingImpl - class gov.nih.nlm.umls.meta.impl.AtomMappingImpl.
Default implementation of the AtomMapping interface.
AtomMappingImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Instantiates an empty AtomMapping.
AtomMappingImpl(AtomMapping) - Constructor for class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Instantiates a AtomMapping from the specified AtomMapping.
AtomRelationship - interface gov.nih.nlm.umls.meta.AtomRelationship.
Represents a relationship between two Atoms.
AtomRelationshipImpl - class gov.nih.nlm.umls.meta.impl.AtomRelationshipImpl.
Implementation of the Relationship interface.
AtomRelationshipImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.AtomRelationshipImpl
Instantiates an empty AtomRelationship.
AtomRelationshipImpl(AtomRelationship) - Constructor for class gov.nih.nlm.umls.meta.impl.AtomRelationshipImpl
Instantiates an AtomRelationship from the specified AtomRelationship.
AttType - class gov.nih.nlm.mms.filters.AttType.
Class contains all fields relevant to an attribute type
AttType() - Constructor for class gov.nih.nlm.mms.filters.AttType
This is the default no-argument constructor
AttType(String) - Constructor for class gov.nih.nlm.mms.filters.AttType
This constructor takes a String in the form sab|type .
AttType(String, String) - Constructor for class gov.nih.nlm.mms.filters.AttType
This constructor takes initial values for each of the fields in the AttType.
AttType(Source, String) - Constructor for class gov.nih.nlm.mms.filters.AttType
This constructor takes initial values for each of the fields in the AttType.
Attribute - interface gov.nih.nlm.umls.meta.Attribute.
Represents information about an attribute attached to an Atom, a Concept, or a Relationship.
AttributeContext - interface gov.nih.nlm.umls.meta.AttributeContext.
Represents information attributes of a Source and code within a StringAttribute.
AttributeContextImpl - class gov.nih.nlm.umls.meta.impl.AttributeContextImpl.
Default implementation of the AttributeContext interface.
AttributeContextImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Instantiates an empty AttributeContext.
AttributeContextImpl(AttributeContext) - Constructor for class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Instantiates a AttributeContext from the specified AttributeContext.
AttributeElement - interface gov.nih.nlm.umls.meta.AttributeElement.
Represents information about a data element with attribute identifiers.
AttributeImpl - class gov.nih.nlm.umls.meta.impl.AttributeImpl.
Default implementation of the Attribute interface.
AttributeImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.AttributeImpl
Instantiate an empty Attribute.
AttributeImpl(Attribute) - Constructor for class gov.nih.nlm.umls.meta.impl.AttributeImpl
This is a copy constructor for Attribute.
AttributeName - class gov.nih.nlm.umls.meta.AttributeName.
Represents an attribute name.
AttributeName() - Constructor for class gov.nih.nlm.umls.meta.AttributeName
Instantiate an empty AttributeName.
AttributeTypesToRemoveFilter - class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter.
This Filter removes all CUIs with a given attribute type.
AttributeTypesToRemoveFilter() - Constructor for class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
Every filter is required to have a no-arg constructor.
AttributeTypesToRemoveListSelectionListener - class gov.nih.nlm.mms.filters.AttributeTypesToRemoveListSelectionListener.
List selection listener for the Attribute Types To Exclude table.
AttributeTypesToRemoveListSelectionListener(AttributeTypesToRemoveFilter, SortableJTable) - Constructor for class gov.nih.nlm.mms.filters.AttributeTypesToRemoveListSelectionListener
Constructor - sets variables for parameters.
AttributeValue - interface gov.nih.nlm.umls.meta.AttributeValue.
Represents information an attribute name and value associated with an AttributeContext.
AttributeValueImpl - class gov.nih.nlm.umls.meta.impl.AttributeValueImpl.
Default implementation of the AttributeValue interface.
AttributeValueImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Instantiates an empty AttributeValue.
AttributeValueImpl(AttributeValue) - Constructor for class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Instantiates a AttributeValue from the specified AttributeValue.
accept(File) - Method in class gov.nih.nlm.mms.SaveConfigAction.PropertiesFileFilter
Indicates whether a file has an extension of .properties, or is a directory to allow navigation.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.AboutAction
Opens a small dialog informing the user about the application.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.AdvancedOptionsAction
Opens an AdvancedOptionsGUI to configure the UserConfiguration.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.AdvancedOptionsGUI
Handles the "Done" button.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.BeginSubsetAction
Starts the subsetting operation and closes the GUI.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.ConceptInputStreamAction
Set the ConceptInputStream.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.ConceptOutputStreamAction
Set the ConceptOutputStream.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.CopyToHardDriveAction
Opens a small dialog informing the user about the application.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.DefaultSubsetSelectionGUI
Handle user selections.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.EnableFilterAction
Present user with a dialog for selecting Filters to enable or disable.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.ExitAction
Exits the application after prompting user to save current configuration.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.FilterEnableDialog
Applies user selections and disposes of the dialog.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.ImportFilterAction
Present user with a dialog for selecting Filters to import.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.MMSProgressMonitor
Called when "Cancel" button is clicked.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.NewConfigAction
Opens the specified configuration file.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.OpenConfigAction
Opens the specified configuration file.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.RedoAction
Pops an item off of the redo stack, makes the necessary changes, and pushes an item onto the undo stack.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.SaveConfigAction
Saves the UserConfiguration to a file.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.UndoAction
Pops an item off of the undo stack, makes the necessary changes, and pushes an item onto the redo stack.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.ValidateDistributionAction
Opens a small dialog informing the user about the application.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.browser.BackwardAction
Action performed.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.browser.ExitRRFAction
Exits the application.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
 
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
 
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.browser.FindAction
Action performed.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.browser.ForwardAction
Action performed.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.browser.OpenSubsetAction
Opens a file chooser dialog.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.browser.PrintAction
Action performed.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.browser.TreeBrowserFinder.TreeBrowserFinderOptionsGUI
 
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.browser.WordSearchFinder.BackwardAction
Action performed.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.browser.WordSearchFinder.ForwardAction
Action performed.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.cxt.ExitMRCXTAction
Exits the application.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.cxt.OpenSubsetAction
Opens a small dialog informing the user about the application.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveOptionsGUI
Responds to the user pushing the done button to register changes made on the SemanticTypesToRemoveOptionsGUI.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveOptionsGUI.DataChangeListener
 
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.swing.DecreaseFontAction
Decrease the font.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.swing.IncreaseFontAction
Increases the font.
actionPerformed(ActionEvent) - Method in class gov.nih.nlm.util.PrintPreviewAction
Handles action.
add(Restrictor) - Method in class gov.nih.nlm.umls.meta.ChainRestrictor
Adds the given Restrictor to the chain so that it will be applied.
add(Restrictor, boolean) - Method in class gov.nih.nlm.umls.meta.ChainRestrictor
Adds the given Restrictor to the chain and uses it for the sort order.
addAncillaryFile(String, Reader) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Adds ancillary file to a list of ancillary files.
addAncillaryFile(String, Reader) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Adds ancillary file to HashMap of ancillary files.
addAtom(Atom) - Method in interface gov.nih.nlm.umls.meta.Concept
Adds the specified Atom.
addAtom(Atom) - Method in interface gov.nih.nlm.umls.meta.StringInfo
Adds the specified Atom.
addAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Adds the specified Atom.
addAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Adds the specified Atom.
addAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Adds the specified Atom.
addAtomMapping(AtomMapping) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Adds the specified AtomMapping.
addAtomMapping(AtomMapping) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Adds the specified AtomMapping.
addAttribute(AtomAttribute) - Method in interface gov.nih.nlm.umls.meta.Atom
Adds the specified AtomAttribute.
addAttribute(Attribute) - Method in interface gov.nih.nlm.umls.meta.Concept
Adds the specified Attribute.
addAttribute(RelationshipAttribute) - Method in interface gov.nih.nlm.umls.meta.Relationship
Adds the specified RelationshipAttribute.
addAttribute(AtomAttribute) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Adds the specified AtomAttribute.
addAttribute(Attribute) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Adds the specified Attribute.
addAttribute(AtomAttribute) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Adds the specified AtomAttribute.
addAttribute(Attribute) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Adds the specified Attribute.
addAttribute(RelationshipAttribute) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Adds the specified RelationshipAttribute.
addAttributeContext(AttributeContext) - Method in interface gov.nih.nlm.umls.meta.StringAttribute
Adds the specified AttributeContext.
addAttributeContext(AttributeContext) - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Adds the specified AttributeContext.
addAttributeTypeToRemove(AttType) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method adds a AttType to the data structure that holds the list of attribute types to be excluded.
addAttributeValue(AttributeValue) - Method in interface gov.nih.nlm.umls.meta.AttributeContext
Adds the specified AttributeValue.
addAttributeValue(AttributeValue) - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Adds the specified AttributeValue.
addCUIRemovedFromSubset(String) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Add SUBX cui to list of cuis removed from subset.
addCUIRemovedFromSubset(String) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Add SUBX cui to list of cuis removed from subset.
addChangeFile(String, Reader) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Adds change file to a list of change files.
addChangeFile(String, Reader) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Adds change file to HashMap of change files.
addComponentHistory(ComponentHistory) - Method in interface gov.nih.nlm.umls.meta.Concept
Adds a ComponentHistory.
addComponentHistory(ComponentHistory) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Adds a ComponentHistory.
addComponentHistory(ComponentHistory) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Adds a ComponentHistory.
addConcept(Concept) - Method in class gov.nih.nlm.mms.browser.ConceptListManager
Adds a Concept for display in the current view.
addConceptMapping(ConceptMapping) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Adds the specified ConceptMapping.
addConceptMapping(ConceptMapping) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Adds the specified ConceptMapping.
addConceptView(ConceptView) - Method in class gov.nih.nlm.mms.browser.ReportsManager
Adds a ConceptView to the ReportsManager.
addContainer(Container) - Static method in class gov.nih.nlm.swing.FontSizeManager
Adds a Container to the list of Containers whose font size will be managed.
addContext(Context) - Method in interface gov.nih.nlm.umls.meta.Atom
Adds the specified Context.
addContext(Context) - Method in interface gov.nih.nlm.umls.meta.Concept
Adds the specified Context.
addContext(Context) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Adds the specified Context.
addContext(Context) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Adds the specified Context.
addContext(Context) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Adds the specified Context.
addContext(Context) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Adds the specified Context.
addContextMember(ContextMember) - Method in interface gov.nih.nlm.umls.meta.Context
Adds the specified ContextMember.
addContextMember(ContextMember) - Method in interface gov.nih.nlm.umls.meta.SourceContext
Adds the specified ContextMember.
addContextMember(ContextMember) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Adds the specified ContextMember.
addContextMember(ContextMember) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Adds the specified ContextMember.
addCoocurrence(Coocurrence) - Method in interface gov.nih.nlm.umls.meta.Atom
Adds the specified Coocurrence.
addCoocurrence(Coocurrence) - Method in interface gov.nih.nlm.umls.meta.Concept
Adds the specified Coocurrence.
addCoocurrence(Coocurrence) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Adds the specified Coocurrence.
addCoocurrence(Coocurrence) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Adds the specified Coocurrence.
addCoocurrence(Coocurrence) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Adds the specified Coocurrence.
addCoocurrence(Coocurrence) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Adds the specified Coocurrence.
addCoocurrenceContext(CoocurrenceContext) - Method in interface gov.nih.nlm.umls.meta.CoocurrenceGroup
Adds the specified CoocurrenceContext.
addCoocurrenceContext(CoocurrenceContext) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Adds the specified CoocurrenceContext.
addCui(String) - Method in interface gov.nih.nlm.mms.CuiList
Enables a filter to specify a Cui should be added to the cui list.
addCui(String) - Method in class gov.nih.nlm.mms.CuiSuiAuiList
Enables a filter to specify a Cui should be added to the cui list.
addCutandPasteModeListener(CutandPasteModeListener) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Adds a CutandPasteModeListener.
addDataChangeListener(DataChangeListener) - Method in interface gov.nih.nlm.mms.GUIConfigurable
Adds a DataChangeListener that responds to configuration changes.
addDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Adds a DataChangeListener that will be notified every time a OriginalMRMetamorphoSysInputStream.fireDataChanged() call is made.
addDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Adds a DataChangeListener that will be notified every time a OriginalMRMetamorphoSysOutputStream.fireDataChanged() call is made.
addDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Adds a DataChangeListener that will be notified every time a RichMRMetamorphoSysInputStream.fireDataChanged() call is made.
addDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Adds a DataChangeListener that will be notified every time a RichMRMetamorphoSysOutputStream.fireDataChanged() call is made.
addDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Adds a DataChangeListener that responds to configuration changes.
addDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Adds a DataChangeListener that responds to configuration changes.
addDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Adds a DataChangeListener that responds to configuration changes.
addDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Adds a DataChangeListener that responds to configuration changes.
addDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Adds a DataChangeListener that responds to configuration changes.
addDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Method adds a DataChangeListener that will be notified every time a AbstractFilter.fireDataChanged() call is made from a filter.
addDefinition(Definition) - Method in interface gov.nih.nlm.umls.meta.Atom
Adds the specified Definition.
addDefinition(Definition) - Method in interface gov.nih.nlm.umls.meta.Concept
Adds the specified Definition.
addDefinition(Definition) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Adds the specified Definition.
addDefinition(Definition) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Adds the specified Definition.
addDefinition(Definition) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Adds the specified Definition.
addDefinition(Definition) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Adds the specified Definition.
addDirectory(String, ConceptList) - Method in class gov.nih.nlm.mms.browser.BrowserState
Adds a directory path to the history list of opened directories.
addFinder(Finder) - Method in class gov.nih.nlm.mms.browser.FinderManager
Adds a Finder to the FinderManager.
addFocusListener(FocusListener) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Adds a CutandPasteModeListener.
addLanguageToRemove(Language) - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
This method adds a Language to the data structure that holds the list of languages to be excluded.
addLocator(Locator) - Method in interface gov.nih.nlm.umls.meta.Atom
Add the specified Locator.
addLocator(Locator) - Method in interface gov.nih.nlm.umls.meta.Concept
Add the specified Locator.
addLocator(Locator) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Add the specified Locator.
addLocator(Locator) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Add the specified Locator.
addLocator(Locator) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Add the specified Locator.
addLocator(Locator) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Add the specified Locator.
addMapping(Mapping) - Method in interface gov.nih.nlm.umls.meta.Concept
Adds a Mapping.
addMapping(Mapping) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Adds a Mapping.
addMapping(Mapping) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Adds a Mapping.
addMetadata(MetaDescription) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Adds the specified MetaDescription.
addMetadata(MetaDescription) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Adds the specified MetaDescription.
addMouseListenerToHeaderInTable(JTable) - Method in class gov.nih.nlm.swing.TableSorter
Adds a mouse listener to the Table to trigger a table sort when a column heading is clicked in the JTable.
addProgressListener(ProgressListener) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Adds a ProgressListener.
addProgressListener(ProgressListener) - Method in interface gov.nih.nlm.util.ProgressReporter
Adds the progress listener.
addProperties(Configurable, Properties) - Method in class gov.nih.nlm.mms.browser.BrowserState
 
addProperty(String, String) - Method in class gov.nih.nlm.mms.UserConfiguration
Adds a property.
addQualifier(QualifierFrequency) - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Adds the specified QualifierFrequency.
addQualifier(QualifierFrequency) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Adds the specified QualifierFrequency.
addRelationship(Relationship) - Method in interface gov.nih.nlm.umls.meta.Atom
Adds the specified Relationship.
addRelationship(Relationship) - Method in interface gov.nih.nlm.umls.meta.Concept
Adds the specified Relationship.
addRelationship(Relationship) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Adds the specified Relationship.
addRelationship(Relationship) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Adds the specified Relationship.
addRelationship(Relationship) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Adds the specified Relationship.
addRelationship(Relationship) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Adds the specified Relationship.
addRelationshipTypeToRemove(RelType) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method adds a RelType to the data structure that holds the list of relationship types to be excluded.
addRemovableTermgroup(SourceTermType) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Adds a SourceTermType to the list of removable termgroups.
addRemovableTermgroup(int) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupListSelectionListener
Selects a row and adds the SourceTermType on that row to the list of removable SourceTermTypes.
addSelectedSource(Source) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method adds a Source to the data structure that holds the list of selected sources.
addSemanticType(SemanticType) - Method in interface gov.nih.nlm.umls.meta.Concept
Adds a SemanticType.
addSemanticType(SemanticType) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Adds a SemanticType.
addSemanticType(SemanticType) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Adds a SemanticType.
addSemanticTypeToRemove(HierarchicalSemanticType) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Adds a HierarchicalSemanticType to the data structure that holds the list of semantic_types to be excluded.
addSourceContext(SourceContext) - Method in interface gov.nih.nlm.umls.meta.StringContext
Adds the specified SourceContext.
addSourceContext(SourceContext) - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Adds the specified SourceContext.
addSourceMetaDescription(SourceMetaDescription) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Adds the specified SourceMetaDescription.
addSourceMetaDescription(SourceMetaDescription) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Adds the specified SourceMetaDescription.
addSourcePath(String) - Method in class gov.nih.nlm.mms.UserConfiguration
Adds a path to the list of installation sources.
addSourcesToRemoveListener(SourcesToRemoveListener) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Adds the specified listener to the list of listeners to be informed when the sources to remove list is changed.
addStringAttribute(StringAttribute) - Method in interface gov.nih.nlm.umls.meta.TermAttribute
Adds the specified StringAttribute.
addStringAttribute(StringAttribute) - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Adds the specified StringAttribute.
addStringContext(StringContext) - Method in interface gov.nih.nlm.umls.meta.ContextGroup
Adds the specified StringContext.
addStringContext(StringContext) - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Adds the specified StringContext.
addSuppressibleTermgroup(SourceTermType) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Adds a SourceTermType to the list of suppressible termgroups.
addSuppressibleTermgroup(int) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsListSelectionListener
Selects a row and adds the SourceTermType on that row to the list of suppressible SourceTermTypes.
addTab(GUIConfigurable) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Adds a GUIConfigurable to the GUI.
addTableSortListener(TableSortListener) - Method in class gov.nih.nlm.swing.SortableJTable
Adds the specified TableSortListener.
addTermAttribute(TermAttribute) - Method in interface gov.nih.nlm.umls.meta.Term
Adds the specified TermAttribute.
addTermAttribute(TermAttribute) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Adds the specified TermAttribute.
addTermVariant(StringInfo) - Method in interface gov.nih.nlm.umls.meta.Term
Adds the specified term variant.
addTermVariant(StringInfo) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Adds the specified term variant.
addUnicodeBom() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Indicates whether or not the output stream is configured to prepend the UTF-8 BOM character.
add_suffix - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
add_unicode_bom - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
 
add_unicode_bom - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
 
addedByUserOnly(String) - Method in interface gov.nih.nlm.mms.CuiList
Indicates that cui was added by the user and not just left through filtering process.
addedByUserOnly(String) - Method in class gov.nih.nlm.mms.CuiSuiAuiList
Indicates that cui was added by the user and not just left through filtering process.
adjustFontSize(Container) - Static method in class gov.nih.nlm.swing.FontSizeManager
Adjusts the size of the fonts in the specified Container.
allowsNonHumanFlag() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Indicates whether or not this semantic type or its descendents allow the non human flag.
allowsNonHumanFlag() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Indicates whether or not this semantic type or its descendents allow the non human flag.
allowsNonHumanFlag() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Indicates whether or not this semantic type or its descendents allow the non human flag.
ambigCheck(Atom) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Checks the maps to see if the given Atoms sui or lui should be added to the ambiguous maps.
ambigCheck(Atom) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Checks the maps to see if the given Atoms sui or lui should be added to the ambiguous maps.
ancillary_files - Variable in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
 
ancillary_files - Variable in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
 
anySty() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Indicates whether any or all of a concepts semantic types must be on the removal list for the concept to be removed.
applyChanges(Concept) - Method in interface gov.nih.nlm.mms.filters.ConceptManipulator
Manipulates data in the Concept, but does not remove any data from the concept.
applyChanges(Concept) - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Manipulates data in the Concept, but does not remove any data from the concept.
applyChanges(Concept) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Manipulates data in the Concept, but does not remove any data from the concept.
applyFilter(Concept) - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Deprecated. Use one of the sub-interfaces instead
applyFilter(Concept) - Method in interface gov.nih.nlm.mms.filters.Filter
Deprecated. Use one of the sub-interfaces instead
applySelections(Concept) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
Method which determines if a given CUI will be removed from the release.
applySelections(Concept) - Method in interface gov.nih.nlm.mms.filters.ConceptContentSelector
Method which removes a given Concept or its components from the release.
applySelections(Concept) - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Apply the filter to the specified Concept.
applySelections(Concept) - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Method determines if a given CUI component will be removed from the release.
applySelections(Concept) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
Method which determines if a given CUI will be removed from the release.
applySelections(Concept) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Sets the suppressibility of atoms and removes suppressible content if advanced options indicate to do so.
applySelections(Concept) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method which determines if a given Concept or its components will be removed from the release.
applySelections(Concept) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Sets the suppressibility of atoms and removes suppressible content if advanced options indicate to do so.
archiveContainsDir(File, String) - Static method in class gov.nih.nlm.mms.MMSToolkit
Returns true if the given archive File contains the given directory.
atom_hm - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
atoms - Variable in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
 
atoms - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
 
attribute_type_table - Variable in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
 
attribute_types - Static variable in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
 
attribute_types_to_remove - Variable in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
 
attributes - Variable in class gov.nih.nlm.umls.meta.impl.ConceptImpl
 
aui - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
autoscroll(Point) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Provides the auto scrolling functionality during a drag.

B

BackwardAction - class gov.nih.nlm.mms.browser.BackwardAction.
Action used for backward navigation.
BackwardAction(ConceptListManager) - Constructor for class gov.nih.nlm.mms.browser.BackwardAction
Instantiates a BackwardAction with the specified ConceptListManager.
BatchMetamorphoSys - class gov.nih.nlm.mms.BatchMetamorphoSys.
 
BatchMetamorphoSys() - Constructor for class gov.nih.nlm.mms.BatchMetamorphoSys
 
BeginSubsetAction - class gov.nih.nlm.mms.BeginSubsetAction.
Used to initiate the subsetting process.
BeginSubsetAction(MetamorphoSys, MetamorphoSysGUI) - Constructor for class gov.nih.nlm.mms.BeginSubsetAction
Instantiates a BeginSubsetAction.
BevelArrowIcon - class gov.nih.nlm.swing.BevelArrowIcon.
Icon that depicts an arrow used on a column header to indicate if sorting is ascending or descending.
BevelArrowIcon(int, boolean, boolean) - Constructor for class gov.nih.nlm.swing.BevelArrowIcon
Instantiates a BevelArrowIcon from the specified parameters.
BlankIcon - class gov.nih.nlm.swing.BlankIcon.
Used as a filler on the column header when the user has not yet chosen to sort a column and a directional BevelArrowIcon is inappropriate.
BlankIcon() - Constructor for class gov.nih.nlm.swing.BlankIcon
Instantiate an empty BlankIcon.
BlankIcon(Color, int) - Constructor for class gov.nih.nlm.swing.BlankIcon
Instantiates a BlankIcon using the color and size specified
BrowserLauncher - class gov.nih.nlm.util.BrowserLauncher.
Check for updates: http://sourceforge.net/projects/browserlauncher/ BrowserLauncher is a class that provides one static method, openURL, which opens the default web browser for the current user of the system to the given URL.
BrowserState - class gov.nih.nlm.mms.browser.BrowserState.
Data repository for historical information on past opened directories and viewed concepts.
BrowserState() - Constructor for class gov.nih.nlm.mms.browser.BrowserState
Constructor.
backupConfig() - Method in class gov.nih.nlm.mms.SaveConfigAction
Backup the config file to mmsys.prop.sav.
backward() - Method in class gov.nih.nlm.mms.browser.ConceptListManager
Moves the concept list backwards by one.
beginInitializeCuiList() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Informs SubsetListener that the Initialize Cui List phase is starting.
beginInitializeCuiList() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Informs SubsetListener that the Initialize Cui List phase is starting.
beginInitializeCuiList() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Informs SubsetListener that the Initialize Cui List phase is starting.
beginInitializeCuiList() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Informs SubsetListener that the Initialize Cui List phase is starting.
beginInitializeCuiList() - Method in interface gov.nih.nlm.mms.SubsetListener
Informs filter that the Initialize Cui List phase is starting.
beginInitializeCuiList() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Informs SubsetListener that the Initialize Cui List phase is starting.
beginSubsetContent() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Informs SubsetListener that the Subset Content phase is starting.
beginSubsetContent() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Informs SubsetListener that the Subset Content phase is starting.
beginSubsetContent() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Informs SubsetListener that the Subset Content phase is starting.
beginSubsetContent() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Informs SubsetListener that the Subset Content phase is starting.
beginSubsetContent() - Method in interface gov.nih.nlm.mms.SubsetListener
Informs filter that the Subset Content phase is starting.
beginSubsetContent() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Informs SubsetListener that the Subset Content phase is starting.
buildIndex(String, String[], FileStatistics, ProgressMonitor) - Method in class gov.nih.nlm.umls.io.IndexBuilder
Builds an index file for the given file and column.
buildSuiCountIndex(ProgressMonitor) - Method in class gov.nih.nlm.umls.io.SuiCountIndexBuilder
Builds an index file called SUI_CT.x
buildSuiCountWordIndex(ProgressMonitor) - Method in class gov.nih.nlm.umls.io.SuiCountIndexBuilder
Builds an index file called SUI_CT_MRXW.x

C

CONFIG_SUBSET - Static variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
CenteredBackgroundBorder - class gov.nih.nlm.swing.CenteredBackgroundBorder.
Used to create a background image on a component.
CenteredBackgroundBorder(BufferedImage) - Constructor for class gov.nih.nlm.swing.CenteredBackgroundBorder
 
ChainRestrictor - class gov.nih.nlm.umls.meta.ChainRestrictor.
Default implementation of the CoocurrenceContext interface.
ChainRestrictor() - Constructor for class gov.nih.nlm.umls.meta.ChainRestrictor
Instantiates an empty ChainRestrictor.
CharacterValueOf(String) - Static method in class gov.nih.nlm.util.ObjectXMLSerializer
The Character class does not have a valueOf(String) method, this method takes its place in reconstructing primitive values.
ChecksumValidator - class gov.nih.nlm.mms.ChecksumValidator.
Validates byte counts and MD5s for the NLM files.
ChecksumValidator(File, GlassPaneListener) - Constructor for class gov.nih.nlm.mms.ChecksumValidator
Instantiates a ChecksumValidator.
ClasspathToolkit - class gov.nih.nlm.util.ClasspathToolkit.
This class sets the classpath (java.class.path) when Java Web Start is used.
ClasspathToolkit() - Constructor for class gov.nih.nlm.util.ClasspathToolkit
 
ColumnStatistics - class gov.nih.nlm.util.ColumnStatistics.
Container for statistics about file columns.
ColumnStatistics() - Constructor for class gov.nih.nlm.util.ColumnStatistics
Instantiates an empty ColumnStatistics.
ComponentHistory - interface gov.nih.nlm.umls.meta.ComponentHistory.
Represents source-asserted history information.
ComponentHistoryImpl - class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl.
Default implementation of ComponentHistory.
ComponentHistoryImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Instantiates an empty ComponentHistory.
ComponentHistoryImpl(ComponentHistory) - Constructor for class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Instantiates a ComponentHistory from the specified ComponentHistory.
Concept - interface gov.nih.nlm.umls.meta.Concept.
Represents a UMLS Concept.
Concept.ByCUIComparator - class gov.nih.nlm.umls.meta.Concept.ByCUIComparator.
Inner class compares Concepts based on cui.
Concept.ByCUIComparator() - Constructor for class gov.nih.nlm.umls.meta.Concept.ByCUIComparator
 
Concept.ByPreferredNameComparator - class gov.nih.nlm.umls.meta.Concept.ByPreferredNameComparator.
Sorts the Concepts based on String order.
Concept.ByPreferredNameComparator(Language) - Constructor for class gov.nih.nlm.umls.meta.Concept.ByPreferredNameComparator
Instantiates a comparator.
ConceptContentSelector - interface gov.nih.nlm.mms.filters.ConceptContentSelector.
This is an interface with methods used to remove components of Concepts from the subset.
ConceptElement - interface gov.nih.nlm.umls.meta.ConceptElement.
Represents information about a data element connected to a Concept.
ConceptImpl - class gov.nih.nlm.umls.meta.impl.ConceptImpl.
Default implementation of the Concept interface.
ConceptImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.ConceptImpl
Instantiates an empty Concept.
ConceptImpl(Concept) - Constructor for class gov.nih.nlm.umls.meta.impl.ConceptImpl
Instantiates a Concept from the specified Concept.
ConceptInputStream - interface gov.nih.nlm.mms.ConceptInputStream.
This interface defines an API for reading Concepts from some input source.
ConceptInputStream - interface gov.nih.nlm.umls.io.ConceptInputStream.
Generically represents a way of reading Concepts from some input source.
ConceptInputStreamAction - class gov.nih.nlm.mms.ConceptInputStreamAction.
Used to change the input stream.
ConceptInputStreamAction(MetamorphoSysGUI, JTextField, JPanel) - Constructor for class gov.nih.nlm.mms.ConceptInputStreamAction
Instantiates the action.
ConceptList - class gov.nih.nlm.mms.browser.ConceptList.
Data repository for information on viewed concepts.
ConceptList() - Constructor for class gov.nih.nlm.mms.browser.ConceptList
Constructor.
ConceptListManager - class gov.nih.nlm.mms.browser.ConceptListManager.
Manages the concept history.
ConceptListManager() - Constructor for class gov.nih.nlm.mms.browser.ConceptListManager
Instantiates an ConceptListManager.
ConceptManipulator - interface gov.nih.nlm.mms.filters.ConceptManipulator.
Manipulates data in the Concept, but does not remove any components from the Concept.
ConceptMapping - interface gov.nih.nlm.umls.meta.ConceptMapping.
Represents a mapping between two UMLS Concept identifiers.
ConceptMappingImpl - class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl.
Default implementation of the ConceptMapping interface.
ConceptMappingImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Instantiates an empty ConceptMapping.
ConceptMappingImpl(ConceptMapping) - Constructor for class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Instantiates a ConceptMapping from the specified ConceptMapping.
ConceptOutputStream - interface gov.nih.nlm.mms.ConceptOutputStream.
This interface defines an API for writing Concepts to the output Metathesaurus, an output destination.
ConceptOutputStream - interface gov.nih.nlm.umls.io.ConceptOutputStream.
Generically represents a way of writing Concepts out.
ConceptOutputStreamAction - class gov.nih.nlm.mms.ConceptOutputStreamAction.
Used to change the output stream.
ConceptOutputStreamAction(MetamorphoSysGUI, JTextField, JPanel) - Constructor for class gov.nih.nlm.mms.ConceptOutputStreamAction
Instantiates the action.
ConceptQueue - class gov.nih.nlm.mms.ConceptQueue.
First In First Out queue for Concept objects.
ConceptQueue(int) - Constructor for class gov.nih.nlm.mms.ConceptQueue
Instantiates a ConceptQueue with the specified size.
ConceptSelector - interface gov.nih.nlm.mms.filters.ConceptSelector.
Indicates if Concepts should be kept for the subset or removed from the subset.
ConceptView - interface gov.nih.nlm.mms.browser.ConceptView.
Generically represents a view of a concept.
Configurable - interface gov.nih.nlm.mms.Configurable.
Generically represents an object that can be configured by the MetamorphoSys application.
ConfigurationGUI - class gov.nih.nlm.mms.ConfigurationGUI.
This dialog is used to choose the configuration options during the installation process.
ConfigurationGUI(MetamorphoSys) - Constructor for class gov.nih.nlm.mms.ConfigurationGUI
Instantiates the GUI.
ConfigureSubsetProgressMonitor - class gov.nih.nlm.mms.ConfigureSubsetProgressMonitor.
GUI for displaying subsetting progress.
ConfigureSubsetProgressMonitor() - Constructor for class gov.nih.nlm.mms.ConfigureSubsetProgressMonitor
Instantiates a ConfigureSubsetProgressMonitor and initializes it.
ContentView - class gov.nih.nlm.umls.meta.ContentView.
Defines the content view for a ConceptElement.
ContentView() - Constructor for class gov.nih.nlm.umls.meta.ContentView
Instantiates an empty ContentView.
ContentView(String) - Constructor for class gov.nih.nlm.umls.meta.ContentView
Instantiates a ContentView from the specified String value.
ContentView(long) - Constructor for class gov.nih.nlm.umls.meta.ContentView
Instantiates a ContentView from the specified long value.
ContentViewElement - interface gov.nih.nlm.umls.meta.ContentViewElement.
Represents an element that belongs to a content view.
ContentViewFilter - class gov.nih.nlm.mms.filters.ContentViewFilter.
Keeps only content in selected content views.
ContentViewFilter() - Constructor for class gov.nih.nlm.mms.filters.ContentViewFilter
Instantiates an empty ContentViewFilter.
Context - interface gov.nih.nlm.umls.meta.Context.
Represents a single "path to the root" of an Atom, including the relevant tree-numbers and the various ancestors, children, and siblings.
ContextGroup - interface gov.nih.nlm.umls.meta.ContextGroup.
Represents a grouping of StringContexts all of which share the same string identifier.
ContextGroupImpl - class gov.nih.nlm.umls.meta.impl.ContextGroupImpl.
Default implementation of the ContextGroup interface.
ContextGroupImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Instantiates an empty ContextGroup.
ContextGroupImpl(ContextGroup) - Constructor for class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Instantiates a ContextGroup from the specified ContextGroup.
ContextImpl - class gov.nih.nlm.umls.meta.impl.ContextImpl.
Default implementation of the Context interface.
ContextImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.ContextImpl
Instantiates an empty Context.
ContextImpl(Context) - Constructor for class gov.nih.nlm.umls.meta.impl.ContextImpl
Instantiates a Context from the specified Context.
ContextMember - interface gov.nih.nlm.umls.meta.ContextMember.
Represents information about ancestors, children, or siblings in a hierarchy.
ContextMemberImpl - class gov.nih.nlm.umls.meta.impl.ContextMemberImpl.
Default implementation of the ContextMember interface.
ContextMemberImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Instantiates an empty ContextMember.
ContextMemberImpl(ContextMember) - Constructor for class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Instantiates a ContextMember from the specified ContextMember.
Coocurrence - interface gov.nih.nlm.umls.meta.Coocurrence.
Represents a co-ocurring of two names (Atoms) or meanings (Concepts) in a source of biomedical literature.
CoocurrenceContext - interface gov.nih.nlm.umls.meta.CoocurrenceContext.
Represents part of a CoocurrenceGroup, containing more detailed information about how two co ocurring meanings (or identifiers) are related in a particular source of biomedical literature.
CoocurrenceContextImpl - class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl.
Default implementation of the CoocurrenceContext interface.
CoocurrenceContextImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Instantiates an empty CoocurrenceContext.
CoocurrenceContextImpl(CoocurrenceContext) - Constructor for class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Instantiates a CoocurrenceContext from the specified CoocurrenceContext.
CoocurrenceGroup - interface gov.nih.nlm.umls.meta.CoocurrenceGroup.
Represents a group of co-ocurring Concepts or Atoms.
CoocurrenceGroupImpl - class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl.
Default implementation of the CoocurrenceGroup interface.
CoocurrenceGroupImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Instantiates an empty CoocurrenceGroup.
CoocurrenceGroupImpl(CoocurrenceGroup) - Constructor for class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Instantiates a CoocurrenceGroup from the specified CoocurrenceGroup.
CoocurrenceImpl - class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl.
Default implementation of the Coocurrence interface.
CoocurrenceImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Instantiates an empty Coocurrence.
CoocurrenceImpl(Coocurrence) - Constructor for class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Instantiates a Coocurrence from the specified Coocurrence.
CoocurrenceType - class gov.nih.nlm.umls.meta.CoocurrenceType.
Represents a type of coocurrence.
CoocurrenceType() - Constructor for class gov.nih.nlm.umls.meta.CoocurrenceType
Instantiates an empty CoocurrenceType.
CopyToHardDriveAction - class gov.nih.nlm.mms.CopyToHardDriveAction.
This class is used for the File->Copy to Hard Drive menu of the WelcomeGUI.
CopyToHardDriveAction() - Constructor for class gov.nih.nlm.mms.CopyToHardDriveAction
Instantiates a CopyToHardDriveAction.
CuiList - interface gov.nih.nlm.mms.CuiList.
This class is used during the first phase of MetamorphoSys subsetting, in which a list of cuis to be kept is built up.
CuiSearchFinder - class gov.nih.nlm.mms.browser.CuiSearchFinder.
Represents a Finder that directly looks up concepts by CUI values.
CuiSearchFinder() - Constructor for class gov.nih.nlm.mms.browser.CuiSearchFinder
Instantiates a CuiSearchFinder.
CuiSuiAuiList - class gov.nih.nlm.mms.CuiSuiAuiList.
This class is used during the first phase of MetamorphoSys subsetting, in which a list of cuis to be kept is built up.
CuiSuiAuiList() - Constructor for class gov.nih.nlm.mms.CuiSuiAuiList
Instantiates an empty CuiSuiAuiList
CutandPasteDNDTable - class gov.nih.nlm.swing.CutandPasteDNDTable.
A type of JTable that supports cut-and-paste and drag-and-drop operations for reordering rows.
CutandPasteDNDTable(CutandPasteDNDTableModel) - Constructor for class gov.nih.nlm.swing.CutandPasteDNDTable
Instantiates a CutandPasteDNDTable from the specified model.
CutandPasteDNDTable() - Constructor for class gov.nih.nlm.swing.CutandPasteDNDTable
Instantiates a CutandPasteDNDTable without a model.
CutandPasteDNDTableModel - interface gov.nih.nlm.swing.CutandPasteDNDTableModel.
Model for use with CutandPasteDNDTable.
CutandPasteModeEvent - class gov.nih.nlm.swing.CutandPasteModeEvent.
Represents a cut or paste event fired from the CutandPasteDNDTable.
CutandPasteModeEvent(Object) - Constructor for class gov.nih.nlm.swing.CutandPasteModeEvent
Instantiates a CutandPasteModeEvent from the specified source.
CutandPasteModeListener - interface gov.nih.nlm.swing.CutandPasteModeListener.
Generically represents a listener for cut and paste events fired from a CutandPasteDNDTable.
calculateMD5s() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Indicates whether or not the output stream is configured to calculate md5 values for all of the output files.
calculateMD5s() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Indicates whether or not the output stream is configured to calculate md5 values for all of the output files.
cancel() - Static method in class gov.nih.nlm.mms.MMSToolkit
Determines whether or not a cancel operation should call System.Exit.
cancel() - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Handles a cancel operation from the progress monitor.
cancel() - Method in class gov.nih.nlm.mms.browser.JEditorPaneFinderHandler
Indicates the find operation has been cancelled on the gui.
cancel() - Method in interface gov.nih.nlm.util.FinderHandler
Indicates that the find operation has been cancelled on the gui.
cancelled - Static variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
cancelled - Variable in class gov.nih.nlm.mms.OpenConfigAction
 
cancelled() - Method in class gov.nih.nlm.swing.PasswordDialog
 
centerDialog(Frame) - Method in class gov.nih.nlm.swing.FindDialog
Center this dialog window relative to its owning Frame.
changeInputStream(MetamorphoSysInputStream, JTextField, JPanel) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Updates the MetamorphoSysInputStream on the gui.
changeOutputStream(MetamorphoSysOutputStream, JTextField, JPanel) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Updates the MetamorphoSysOutputStream on the gui.
change_files - Variable in class gov.nih.nlm.mms.browser.ExpandableRawView
 
change_files - Variable in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
 
change_files - Variable in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
 
char_set - Variable in class gov.nih.nlm.umls.io.SearchStringPushBackReader
 
characters(char[], int, int) - Method in class gov.nih.nlm.util.ObjectXMLSerializer
Implementation of DefaultHandler API.
checkEnableOptionsMenu() - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Enables or disables options menu items for input and output handlers.
checkModel() - Method in class gov.nih.nlm.swing.TableSorter
Validates the model.
checkPreviousState() - Method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
Check the previous state, if it exists, offer to load it for the user.
chooseFile(String, String, int, File, File, Frame) - Static method in class gov.nih.nlm.mms.MMSToolkit
Prompt user to choose a file.
chooseFile(String, String, int, File, File, FileFilter, Frame) - Static method in class gov.nih.nlm.mms.MMSToolkit
Prompts user to choose a file, specifying a file filter.
chooseFile(String, String, int, File, File, FileFilter, String, Frame) - Static method in class gov.nih.nlm.mms.MMSToolkit
Prompts user to choose a file to save, specifying a file filter and file extension.
clear() - Method in class gov.nih.nlm.mms.CuiSuiAuiList
Clears all refereces to the cui_list components so CuiSuiAuiList can be garbage collected.
clear() - Method in class gov.nih.nlm.mms.browser.FinderManager
Resets the graphical components of the Finders.
clear() - Method in class gov.nih.nlm.mms.browser.ReportsManager
Resets the graphical components of the ConceptViews.
clear() - Method in class gov.nih.nlm.umls.meta.ChainRestrictor
Clears list of restictors in chain so that no restrictors will be applied.
clear() - Method in interface gov.nih.nlm.umls.meta.Concept
This removes all of the Concept's components.
clear() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
This removes all of the Concept's components.
clear() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
This removes all of the PlaceholderConcept's components.
clear() - Method in class gov.nih.nlm.util.ColumnStatistics
Clears the statistics for the column.
clear() - Method in class gov.nih.nlm.util.FileStatistics
Clear all statistics.
clear() - Method in class gov.nih.nlm.util.ObjectXMLSerializer
Clears the various class fields for the next round.
clear() - Method in class gov.nih.nlm.util.OrderedHashMap
Clears the map.
clearAtomMappings() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Removes all AtomMappings.
clearAtomMappings() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Removes all AtomMappings.
clearAtoms() - Method in interface gov.nih.nlm.umls.meta.Concept
Remove all Atoms.
clearAtoms() - Method in interface gov.nih.nlm.umls.meta.StringInfo
Removes all Atoms.
clearAtoms() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Remove all Atoms.
clearAtoms() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Remove all Atoms.
clearAtoms() - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Removes all Atoms.
clearAttributeContexts() - Method in interface gov.nih.nlm.umls.meta.StringAttribute
Removes all AttributeContexts.
clearAttributeContexts() - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Removes all AttributeContexts.
clearAttributeTypesToRemove() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method clears the data structure that holds the list of attribute types to be excluded.
clearAttributeValues() - Method in interface gov.nih.nlm.umls.meta.AttributeContext
Removes all AttributeValues.
clearAttributeValues() - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Removes all AttributeValues.
clearAttributes() - Method in interface gov.nih.nlm.umls.meta.Atom
Remove all AtomAttributes.
clearAttributes() - Method in interface gov.nih.nlm.umls.meta.Concept
Remove all Attributes.
clearAttributes() - Method in interface gov.nih.nlm.umls.meta.Relationship
Remove all RelationshipAttributes.
clearAttributes() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Remove all AtomAttributes.
clearAttributes() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Remove all Attributes.
clearAttributes() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Remove all AtomAttributes.
clearAttributes() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Remove all Attributes.
clearAttributes() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Remove all RelationshipAttributes.
clearAuiSet() - Method in class gov.nih.nlm.mms.CuiSuiAuiList
Clears all references to the aui_set so that it can be garbage collected.
clearComponentHistories() - Method in interface gov.nih.nlm.umls.meta.Concept
Removes all ComponentHistorys.
clearComponentHistories() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Removes all ComponentHistorys.
clearComponentHistories() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Removes all ComponentHistorys.
clearConceptList() - Method in class gov.nih.nlm.mms.browser.ConceptListManager
Resets all navigation components.
clearConceptMappings() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Removes all ConceptMappings.
clearConceptMappings() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Removes all ConceptMappings.
clearConfirmDefaultRemovableTermgroups() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Clears the list of SourceTermTypes that have been confirmed by the user to be removable.
clearConfirmDefaultSuppressibleTermgroups() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Clears the list of SourceTermTypes that have been confirmed by the user to be suppressible.
clearContextMembers() - Method in interface gov.nih.nlm.umls.meta.Context
Removes all ContextMembers.
clearContextMembers() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Removes all ContextMembers.
clearContextMembers() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Removes all ContextMembers.
clearContextMembers() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Removes all ContextMembers.
clearContexts() - Method in interface gov.nih.nlm.umls.meta.Atom
Remove all Contexts.
clearContexts() - Method in interface gov.nih.nlm.umls.meta.Concept
Remove all Contexts.
clearContexts() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Remove all Contexts.
clearContexts() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Remove all Contexts.
clearContexts() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Remove all Contexts.
clearContexts() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Remove all Contexts.
clearCoocurrenceContexts() - Method in interface gov.nih.nlm.umls.meta.CoocurrenceGroup
Removes all CoocurrenceContexts.
clearCoocurrenceContexts() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Removes all CoocurrenceContexts.
clearCoocurrences() - Method in interface gov.nih.nlm.umls.meta.Atom
Remove all Coocurrences.
clearCoocurrences() - Method in interface gov.nih.nlm.umls.meta.Concept
Remove all Coocurrences.
clearCoocurrences() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Remove all Coocurrences.
clearCoocurrences() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Remove all Coocurrences.
clearCoocurrences() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Remove all Coocurrences.
clearCoocurrences() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Remove all Coocurrences.
clearDefinitions() - Method in interface gov.nih.nlm.umls.meta.Atom
Remove all Definitions.
clearDefinitions() - Method in interface gov.nih.nlm.umls.meta.Concept
Remove all Definitions.
clearDefinitions() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Remove all Definitions.
clearDefinitions() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Remove all Definitions.
clearDefinitions() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Remove all Definitions.
clearDefinitions() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Remove all Definitions.
clearFilters() - Method in class gov.nih.nlm.mms.UserConfiguration
Clears the active filter list.
clearLanguagesToRemove() - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
This method clears the data structure that holds the list of languages to be excluded.
clearLocators() - Method in interface gov.nih.nlm.umls.meta.Atom
Remove all Locators.
clearLocators() - Method in interface gov.nih.nlm.umls.meta.Concept
Remove all Locators.
clearLocators() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Remove all Locators.
clearLocators() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Remove all Locators.
clearLocators() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Remove all Locators.
clearLocators() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Remove all Locators.
clearMappings() - Method in interface gov.nih.nlm.umls.meta.Concept
Removes all Mappings.
clearMappings() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Removes all Mappings.
clearMappings() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Removes all Mappings.
clearMetadata() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Removes all MetaDescriptions.
clearMetadata() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Removes all MetaDescriptions.
clearObject() - Method in class gov.nih.nlm.util.ObjectXMLSerializer
Clears the object stack.
clearPrecedence() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
This method clears the data structure that holds the precedence list.
clearProgressMonitor() - Method in class gov.nih.nlm.mms.InstallConfiguration
Clears the MMSProgressMonitor.
clearProperties(Configurable) - Method in class gov.nih.nlm.mms.UserConfiguration
Clears the properties associated with a particular Configurable.
clearQualifiers() - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Removes all QualifierFrequencys.
clearQualifiers() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Removes all QualifierFrequencys.
clearRelationshipTypesToRemove() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method clears the data structure that holds the list of relationship types to be excluded.
clearRelationships() - Method in interface gov.nih.nlm.umls.meta.Atom
Remove all Relationships.
clearRelationships() - Method in interface gov.nih.nlm.umls.meta.Concept
Remove all Relationships.
clearRelationships() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Remove all Relationships.
clearRelationships() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Remove all Relationships.
clearRelationships() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Remove all Relationships.
clearRelationships() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Remove all Relationships.
clearRemovableTermgroups() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Clears the list of removable SourceTermTypes.
clearSelectedSources() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method clears the data structure that holds the list of selected sources.
clearSemanticTypes() - Method in interface gov.nih.nlm.umls.meta.Concept
Removes all SemanticTypes.
clearSemanticTypes() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Removes all SemanticTypes.
clearSemanticTypes() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Removes all SemanticTypes.
clearSourceContexts() - Method in interface gov.nih.nlm.umls.meta.StringContext
Removes all SourceContexts.
clearSourceContexts() - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Removes all SourceContexts.
clearSourceDependencies() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Clears data structure that holds Dependency(s).
clearSourceMetaDescription() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Removes all SourceMetaDescriptions.
clearSourceMetaDescription() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Removes all SourceMetaDescriptions.
clearSourcePaths() - Method in class gov.nih.nlm.mms.UserConfiguration
Clears the list of installation sources.
clearStringAttributes() - Method in interface gov.nih.nlm.umls.meta.TermAttribute
Removes all StringAttributes.
clearStringAttributes() - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Removes all StringAttributes.
clearStringContexts() - Method in interface gov.nih.nlm.umls.meta.ContextGroup
Removes all StringContexts.
clearStringContexts() - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Removes all StringContexts.
clearSuppressibleTermgroups() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Clears the list of suppressible SourceTermTypes.
clearTermAttributes() - Method in interface gov.nih.nlm.umls.meta.Term
Removes all TermAttributes.
clearTermAttributes() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Removes all TermAttributes.
clearTermVariants() - Method in interface gov.nih.nlm.umls.meta.Term
Removes all term variants.
clearTermVariants() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Removes all term variants.
clm - Variable in class gov.nih.nlm.mms.browser.AbstractConceptView
 
clm - Variable in class gov.nih.nlm.mms.browser.AbstractFinder
 
close() - Method in interface gov.nih.nlm.mms.ConceptInputStream
Closes the input stream.
close() - Method in interface gov.nih.nlm.mms.ConceptOutputStream
Closes the output stream.
close() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Closes target files that were opened by this class's openTargets() method
close() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Close files opened during RichMRMetathesaurusInputStream.open(String[]).
close() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Closes source files that were opened by this class's openTargets() method.
close() - Method in interface gov.nih.nlm.umls.io.ConceptInputStream
Closes the input stream.
close() - Method in interface gov.nih.nlm.umls.io.ConceptOutputStream
Closes the output stream.
close() - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Close files opened during OriginalMRFilesConceptInputStream.open(String[]).
close() - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
Closes files opened in OriginalMRFilesConceptOutputStream.open(String).
close() - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
Close files opened during OriginalMRMetathesaurusInputStream.open(String[]).
close() - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Closes source files that were opened by this class's openTargets() method.
close() - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Close files opened during RichMRFilesConceptInputStream.open(String[]).
close() - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Closes source files that were opened by @link #open(String)}.
close() - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Release resources being used by this class.
close() - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
Close files opened during RichMRMetathesaurusInputStream.open(String[]).
close() - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Closes source files that were opened by this class's openTargets() method.
close() - Method in class gov.nih.nlm.umls.io.SearchStringPushBackReader
Close the SearchStringPushBackReader.
close() - Method in class gov.nih.nlm.util.MultiplePathReader
Close the MultiplePathReader.
code - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
col_data_type_map - Variable in class gov.nih.nlm.umls.io.InputStreamFileStatisticsConfiguration
 
col_desc_map - Variable in class gov.nih.nlm.umls.io.InputStreamFileStatisticsConfiguration
 
compare(Object, Object) - Method in class gov.nih.nlm.mms.browser.WordSearchFinderOptionsGUI.CuiSortOrderComparator
Compares the specified field of each String object.
compare(Object, Object) - Method in class gov.nih.nlm.mms.browser.WordSearchFinderOptionsGUI.StringSortOrderComparator
Compares the specified field of each String object.
compare(int, int) - Method in class gov.nih.nlm.swing.TableSorter
Perform comparison on the sorting column.
compare(Object, Object) - Method in class gov.nih.nlm.umls.meta.Atom.AtomRankComparator
Compare the two atoms based on the ranks stored previously.
compare(Object, Object) - Method in class gov.nih.nlm.umls.meta.Atom.ByLanguageRestrictor
Compares the Language of each AtomElement object.
compare(Object, Object) - Method in class gov.nih.nlm.umls.meta.AtomElement.ByLanguageRestrictor
Compares the Language of each AtomElement object.
compare(Object, Object) - Method in class gov.nih.nlm.umls.meta.AtomElement.BySourceRestrictor
Compares the Source of each AtomElement object.
compare(Object, Object) - Method in class gov.nih.nlm.umls.meta.ChainRestrictor
Compares objects for sort order.
compare(Object, Object) - Method in class gov.nih.nlm.umls.meta.Concept.ByCUIComparator
Compares the specified field of each String object.
compare(Object, Object) - Method in class gov.nih.nlm.umls.meta.Concept.ByPreferredNameComparator
Compares the specified field of each String object.
compare(Object, Object) - Method in class gov.nih.nlm.umls.meta.SourceElement.BySourceComparator
Compares the specified field of each String object.
compare(Object, Object) - Method in class gov.nih.nlm.umls.meta.SourceElement.BySourceRestrictor
Compares the Source of each SourceElement object.
compare(Object, Object) - Method in class gov.nih.nlm.util.StringFieldComparator
Compares the specified field of each String object.
compareRowsByColumn(int, int, int) - Method in class gov.nih.nlm.swing.TableSorter
Compares data in sorted column by type.
compareTo(Object) - Method in class gov.nih.nlm.mms.Dependency
Compares this Dependency to another one.
compareTo(Object) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Compares this object with the specified object for order.
compareTo(Object) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Compares this object with the specified object for order.
compareTo(Object) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Compares this object with the specified object for order.
compareTo(Object) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Compares this object with the specified object for order.
compareTo(Object) - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Compares this object with the specified object for order.
compareTo(Object) - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Compares this object with the specified object for order.
compareTo(Object) - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Compares this object with the specified object for order.
compareTo(Object) - Method in class gov.nih.nlm.mms.filters.AttType
This method compares this AttType with a parameter Object based on the source abbreviation.
compareTo(Object) - Method in class gov.nih.nlm.mms.filters.RelType
This method compares the RelType with a parameter Object based on the source abbreviation.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.AbstractExpandedForm
Compares the given Object with this ExpandedForm.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Compares this HierarchicalSemanticType to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.Source
Compares this Source to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.SourceTermType
Compares this SourceTermType to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.AtomAttributeImpl
Compares this AtomAttribute to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.AtomCoocurrenceImpl
Compares this AtomCoocurrence to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Compares this AtomMapping to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.AtomRelationshipImpl
Compares this Relationship to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Compares this AttributeContext to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Compares this Attribute to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Compares this AttributeValue to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Compares this ComponentHistory to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Compares this ConceptMapping to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Compares this ContextGroup to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Compares this Source to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Compares this ContextMember to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Compares this Source to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Compares this CoocurrenceGroup to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Compares this Coocurrence to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Compares this Definition to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Compares this IndexEntry to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Compares this Locator to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Compares this MapObject with the specified object for order.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Compares this Mapping to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.MetaDescriptionImpl
Compares this MetaDescription to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Compares this Atom to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Compares this Concept to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.QualifierFrequencyImpl
Compares this QualifierFrequency to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipAttributeImpl
Compares this RelationshipAttribute to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Compares this Relationship to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Compares this ReleaseMetadata with the specified object for order.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Compares this STYMetaDescription to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Compares this SemanticType to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Compares this SourceContext to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Compares this SourceMetaDescription to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Compares this StringAttribute to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Compares this StringContext to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Compares this StringInfo to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Compares this TermAttribute to another one.
compareTo(Object) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Compares this Term to another one.
component_histories - Variable in class gov.nih.nlm.umls.meta.impl.ConceptImpl
 
concept - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
concept_list - Variable in class gov.nih.nlm.mms.browser.ConceptListManager
 
config - Variable in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
 
config - Variable in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
 
confirmExit() - Method in class gov.nih.nlm.mms.MMSProgressMonitor
Confirms with user before exiting the application.
confirmRequest(String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Asks the user a (yes/no) question.
confirmRequest(Component, String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Asks the user a (yes/no) question.
confirmRequestWithOption(Component, String, String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Asks the user a (yes/no) question.
confirmResponse() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsOptionsGUI
This requires the user to confirm choice to remove suppressible data.
containsKey(Object, Object) - Method in class gov.nih.nlm.util.MultiMap
Determines whether or not it contains the specified key.
containsUnicode(String) - Static method in class gov.nih.nlm.mms.MMSToolkit
Indicates whether or not the given String has any extended unicode characters in it.
content_panel - Variable in class gov.nih.nlm.mms.ConceptInputStreamAction
 
content_panel - Variable in class gov.nih.nlm.mms.ConceptOutputStreamAction
 
contexts - Variable in class gov.nih.nlm.umls.meta.impl.ConceptImpl
 
coocurrences - Variable in class gov.nih.nlm.umls.meta.impl.ConceptImpl
 
copy(File, File) - Static method in class gov.nih.nlm.swing.SwingToolkit
Copies the input file to the output file.
copy(File, File) - Static method in class gov.nih.nlm.util.SystemToolkit
Copies the input file to the output file.
copy(File, File, ProgressMonitor) - Static method in class gov.nih.nlm.util.SystemToolkit
Copies the input file to the output file.
copyResourceToFile(InputStream, String, String) - Static method in class gov.nih.nlm.mms.MMSToolkit
Copies the contents of the given InputStream to a new directory with a given file name.
countChildContexts(Context) - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Looks up the given Context in the appropriate index files and returns the count of Contexts whose ptr matches the given one + the aui.
countSiblingContexts(Context) - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Looks up the given Context in the appropriate index files and returns the count of Contexts whose ptr matches the given one.
countTokens() - Method in class gov.nih.nlm.util.FieldedStringTokenizer
Calculates the number of times that this tokenizer's FieldedStringTokenizer.nextToken() method can be called before it generates an exception.
createComponents() - Method in class gov.nih.nlm.util.PrintPreviewAction
 
cui - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
 
cui_list - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
 
cui_list - Variable in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
 
current_index - Variable in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
 
current_index - Variable in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
 
current_page - Variable in class gov.nih.nlm.util.OnePagePrintable
 
current_page - Variable in class gov.nih.nlm.util.TwoPagePrintable
 
cutDoneinCutMode(CutandPasteModeEvent) - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
This method is called when a cut has appropriately been done while in cut mode.
cutDoneinCutMode(CutandPasteModeEvent) - Method in interface gov.nih.nlm.swing.CutandPasteModeListener
Informs the listener that a cut was made while in the mode where a cut was expected.
cutDoneinPasteMode(CutandPasteModeEvent) - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
This method is called when a cut has been attempted illegally while in paste mode.
cutDoneinPasteMode(CutandPasteModeEvent) - Method in interface gov.nih.nlm.swing.CutandPasteModeListener
Informs the listener that a cut was made while in the mode where a paste was expected.
cutRow(int[]) - Method in class gov.nih.nlm.mms.filters.PrecedenceTableModel
Removes rows in table that are cut.
cutRow(int[]) - Method in interface gov.nih.nlm.swing.CutandPasteDNDTableModel
Removes rows at the specified indices from the table.
cvf - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 

D

DONE - Static variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
DOWN - Static variable in class gov.nih.nlm.swing.BevelArrowIcon
 
DOWN - Static variable in class gov.nih.nlm.swing.SortButtonRenderer
 
DataChangeEvent - class gov.nih.nlm.swing.DataChangeEvent.
Generically represents an event that indicates a change in the underlying data structure of some component.
DataChangeEvent(Object) - Constructor for class gov.nih.nlm.swing.DataChangeEvent
Instantiates a DataChangeEvent specified source object.
DataChangeListener - interface gov.nih.nlm.swing.DataChangeListener.
Generically represents a listener for data changes.
DateValueOf(String) - Static method in class gov.nih.nlm.util.ObjectXMLSerializer
The Date classes do not have a valueOf(String) method, this method takes its place in reconstructing primitive values.
DecreaseFontAction - class gov.nih.nlm.swing.DecreaseFontAction.
GUI Action used to decrease the font in a window.
DecreaseFontAction() - Constructor for class gov.nih.nlm.swing.DecreaseFontAction
Instantiates a DecreaseFontAction.
DefaultSubset - class gov.nih.nlm.mms.DefaultSubset.
Represents a default initial configuration selected by a user.
DefaultSubset() - Constructor for class gov.nih.nlm.mms.DefaultSubset
Instantiates an empty DefaultSubset.
DefaultSubsetSelectionGUI - class gov.nih.nlm.mms.DefaultSubsetSelectionGUI.
Dialog for user to select the DefaultSubset.
DefaultSubsetSelectionGUI(ApplicationConfiguration, UserConfiguration, Frame) - Constructor for class gov.nih.nlm.mms.DefaultSubsetSelectionGUI
Instantiates a DefaultSubsetSelectionGUI from the specified configuration objects.
Definition - interface gov.nih.nlm.umls.meta.Definition.
Represents a definition of an Atom.
DefinitionImpl - class gov.nih.nlm.umls.meta.impl.DefinitionImpl.
Default implementation of the Definition interface.
DefinitionImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Instantiates an empty Definition.
DefinitionImpl(Definition) - Constructor for class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Instantiates a Definition from the specified Definition.
Dependency - class gov.nih.nlm.mms.Dependency.
Represents a dependency between two sources.
Dependency() - Constructor for class gov.nih.nlm.mms.Dependency
Instantiates an empty Dependency.
Dependency(Source, Source) - Constructor for class gov.nih.nlm.mms.Dependency
Instantiates a Dependency between the two specified Sources.
DoubleDocument - class gov.nih.nlm.swing.DoubleDocument.
PlainDocument implementation that only accepts floating point numerical values.
DoubleDocument() - Constructor for class gov.nih.nlm.swing.DoubleDocument
Instantiates a DoubleDocument.
dataChanged(DataChangeEvent) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Responds to a change in the user configuration for one of the active filters.
dataChanged(DataChangeEvent) - Method in interface gov.nih.nlm.swing.DataChangeListener
Informs the listener that data has changed.
data_changed - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
 
data_changed - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
 
decreaseFontSize() - Static method in class gov.nih.nlm.swing.FontSizeManager
Decreases font size of all managed containers.
default_config - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
 
default_config - Variable in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
 
default_config - Variable in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
 
default_config - Variable in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
 
default_configuration - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
 
default_configuration - Variable in class gov.nih.nlm.mms.browser.AbstractConceptView
 
default_configuration - Variable in class gov.nih.nlm.mms.filters.AbstractFilter
 
default_cursor - Static variable in class gov.nih.nlm.mms.DefaultSubsetSelectionGUI
 
default_cursor - Static variable in class gov.nih.nlm.mms.filters.SourcesToRemoveOptionsGUI
 
default_subsets - Variable in class gov.nih.nlm.mms.UserConfiguration
 
definitions - Variable in class gov.nih.nlm.umls.meta.impl.ConceptImpl
 
didLoadCauseWarnings() - Method in class gov.nih.nlm.mms.UserConfiguration
Indicates if there were warnings while loading the user configuration file.
dir - Variable in class gov.nih.nlm.umls.io.IndexBuilder
location of indexes directory
disableGlassPane() - Method in class gov.nih.nlm.mms.ConfigurationGUI
Disable glass pane.
disableGlassPane() - Method in class gov.nih.nlm.mms.InstallationGUI
Disable glass pane.
disableGlassPane() - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Disable glass pane.
disableGlassPane() - Method in class gov.nih.nlm.mms.SubsetGUI
Disable glass pane.
disableGlassPane() - Method in class gov.nih.nlm.mms.ValidateDistributionAction.ValidateDistributionGUI
Disable glass pane.
disableGlassPane() - Method in class gov.nih.nlm.mms.WelcomeGUI
Disable glass pane.
disableGlassPane() - Method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
Disable glass pane.
disableGlassPane() - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI
Disable glass pane.
disableGlassPane() - Method in interface gov.nih.nlm.swing.GlassPaneListener
Disable glass pane.
displayTextFile(Component, String, File, int, int) - Static method in class gov.nih.nlm.mms.ChecksumValidator
Displays a text file for approval or disapproval.
displayTextFile(Component, String, File) - Static method in class gov.nih.nlm.swing.SwingToolkit
Displays a text file.
displayTextFile(Component, String, File, int, int) - Static method in class gov.nih.nlm.swing.SwingToolkit
Displays a text file.
displayURL(Component, String, URL) - Static method in class gov.nih.nlm.swing.SwingToolkit
Displays the file at a given URL.
dispose() - Method in class gov.nih.nlm.mms.ConfigurationGUI
Close this window and re-enable the WelcomeGUI.
dispose() - Method in class gov.nih.nlm.mms.InstallationGUI
Close this window and re-enable the WelcomeGUI.
dispose() - Method in class gov.nih.nlm.mms.SubsetGUI
Close this window and re-enable the WelcomeGUI.
doFind() - Method in class gov.nih.nlm.mms.browser.JEditorPaneFinderHandler
Look for the next occurrence of the search phrase either as whole word or as part of a word, depending on the current dialog setting.
dragDropEnd(DragSourceDropEvent) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Event handler for when dragging ends.
dragEnter(DropTargetDragEvent) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Event handler for when a drag enters the drop component.
dragEnter(DragSourceDragEvent) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Event handler for when dragging enters the drag source component.
dragExit(DropTargetEvent) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Event handler for when a drag exits the drop component.
dragExit(DragSourceEvent) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Event handler for when dragging exits the drag source component.
dragGestureRecognized(DragGestureEvent) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Event handler for recognizing that a drag has started.
dragOver(DropTargetDragEvent) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Event handler for when a drag is over the drop component.
dragOver(DragSourceDragEvent) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Event handler for when dragging passes over the drag source component.
drop(DropTargetDropEvent) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Event handler when a drop occurs in the drop component.
dropActionChanged(DropTargetDragEvent) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Event handler for when a drop action is changed.
dropActionChanged(DragSourceDragEvent) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Event handler for when the drop action changes.
dump() - Method in class gov.nih.nlm.mms.CuiSuiAuiList
Dumps size of the CuiSuiAuiList for debugging purposes.
dump() - Method in class gov.nih.nlm.mms.DefaultSubset
Dump for debugging.
dump() - Method in class gov.nih.nlm.swing.TableSorter
Debug method.

E

EMPTY_BORDER - Static variable in interface gov.nih.nlm.swing.SwingConstants
Use this to create a 15 pixel padding around a GUI component.
EMPTY_BORDER_NO_TOP - Static variable in interface gov.nih.nlm.swing.SwingConstants
Use this to create a 15 bixel padding around a GUI component except for the top which will have no padding.
EMPTY_INSETS - Static variable in interface gov.nih.nlm.swing.SwingConstants
Use this if you want components to have empty insets.
EnableFilterAction - class gov.nih.nlm.mms.EnableFilterAction.
Handles enabling and disabling of filters.
EnableFilterAction(MetamorphoSysGUI, MetamorphoSys) - Constructor for class gov.nih.nlm.mms.EnableFilterAction
Instantiates an EnableFilterAction.
EnableFilterRedoHandler - class gov.nih.nlm.mms.EnableFilterRedoHandler.
Handles the redo operation for an enable or disable filter action.
EnableFilterRedoHandler(MetamorphoSysGUI) - Constructor for class gov.nih.nlm.mms.EnableFilterRedoHandler
Instantiates an EnableFilterRedoHandler for the specified gui.
EnableFilterUndoHandler - class gov.nih.nlm.mms.EnableFilterUndoHandler.
Handles the undo operation for an enable or disable filter action.
EnableFilterUndoHandler(MetamorphoSysGUI) - Constructor for class gov.nih.nlm.mms.EnableFilterUndoHandler
Instantiates an EnableFilterUndoHandler for the specified gui.
Enscript - class gov.nih.nlm.util.Enscript.
Application entry point for printing HTML files.
Enscript() - Constructor for class gov.nih.nlm.util.Enscript
 
Exit(int) - Static method in class gov.nih.nlm.mms.MMSToolkit
Cleans up system resources, then exits.
Exit(int) - Static method in class gov.nih.nlm.swing.SwingToolkit
Cleans up loose ends before calling System.exit(int).
ExitAction - class gov.nih.nlm.mms.ExitAction.
Exits the application.
ExitAction(MetamorphoSys) - Constructor for class gov.nih.nlm.mms.ExitAction
Instantiates an ExitAction
ExitMRCXTAction - class gov.nih.nlm.mms.cxt.ExitMRCXTAction.
Represents an action for exiting the application.
ExitMRCXTAction(MRCXTBuilderGUI) - Constructor for class gov.nih.nlm.mms.cxt.ExitMRCXTAction
Instantiates an ExitMRCXTAction
ExitRRFAction - class gov.nih.nlm.mms.browser.ExitRRFAction.
Represents an action for exiting the application.
ExitRRFAction() - Constructor for class gov.nih.nlm.mms.browser.ExitRRFAction
Instantiates an ExitRRFAction
ExpandableConceptView - class gov.nih.nlm.mms.browser.ExpandableConceptView.
ConceptView that displays the concept report with a formatted appearance that is customizable by the user.
ExpandableConceptView() - Constructor for class gov.nih.nlm.mms.browser.ExpandableConceptView
Instantiates a ExpandableConceptView.
ExpandableConceptView.PopupListener - class gov.nih.nlm.mms.browser.ExpandableConceptView.PopupListener.
 
ExpandableRawView - class gov.nih.nlm.mms.browser.ExpandableRawView.
ConceptView that displays the concept report with a formatted appearance that is customizable by the user.
ExpandableRawView() - Constructor for class gov.nih.nlm.mms.browser.ExpandableRawView
Instantiates a ExpandableRawView.
ExpandableRawView.PopupListener - class gov.nih.nlm.mms.browser.ExpandableRawView.PopupListener.
 
ExpandedForm - interface gov.nih.nlm.umls.meta.ExpandedForm.
Represents an expanded form entry from MRDOC.
enableFilter(Filter) - Method in class gov.nih.nlm.mms.UserConfiguration
Enables the specified valid filter.
enableGlassPane() - Method in class gov.nih.nlm.mms.ConfigurationGUI
Enable glass pane.
enableGlassPane() - Method in class gov.nih.nlm.mms.InstallationGUI
Enable glass pane.
enableGlassPane() - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Enable glass pane.
enableGlassPane() - Method in class gov.nih.nlm.mms.SubsetGUI
Enable glass pane.
enableGlassPane() - Method in class gov.nih.nlm.mms.ValidateDistributionAction.ValidateDistributionGUI
Enable glass pane.
enableGlassPane() - Method in class gov.nih.nlm.mms.WelcomeGUI
Enable glass pane.
enableGlassPane() - Method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
Enable glass pane.
enableGlassPane() - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI
Enable glass pane.
enableGlassPane() - Method in interface gov.nih.nlm.swing.GlassPaneListener
Enable glass pane.
enable_efficient - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
 
encode(String) - Static method in class gov.nih.nlm.util.XMLEntityEncoder
Encodes all of the XML character entities in the specified String so the resulting string can be safely used in a document without a CDATA section.
endElement(String, String, String) - Method in class gov.nih.nlm.util.ObjectXMLSerializer
Implementation of DefaultHandler API.
endInitializeCuiList() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Informs SubsetListener that the Initialize Cui List phase is ending.
endInitializeCuiList() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Informs SubsetListener that the Initialize Cui List phase is ending.
endInitializeCuiList() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Informs SubsetListener that the Initialize Cui List phase is ending.
endInitializeCuiList() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Informs SubsetListener that the Initialize Cui List phase is ending.
endInitializeCuiList() - Method in interface gov.nih.nlm.mms.SubsetListener
Informs filter that the Initialize Cui List phase is ending.
endInitializeCuiList() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Informs SubsetListener that the Initialize Cui List phase is ending.
endSubsetContent() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Informs SubsetListener that the Subset Content phase is ending.
endSubsetContent() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Informs SubsetListener that the Subset Content phase is ending.
endSubsetContent() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Informs SubsetListener that the Subset Content phase is ending.
endSubsetContent() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Informs SubsetListener that the Subset Content phase is ending.
endSubsetContent() - Method in interface gov.nih.nlm.mms.SubsetListener
Informs filter that the Subset Content phase is ending.
endSubsetContent() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Informs SubsetListener that the Subset Content phase is ending.
enforceDependentSourceSelection() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method indicates whether the Enforce Dependent Source Selection option has been chosen on the Advanced Source List Options dialog box.
enforceFamilySelection() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method indicates whether or not the Enforce Family Selection option has been chosen in the Advanced Source List Options dialog box.
entrySet(Object) - Method in class gov.nih.nlm.util.MultiMap
Returns the entry set for the specified "top" key.
equals(Object) - Method in class gov.nih.nlm.mms.Dependency
Returns true if the specified object is equal to this object.
equals(Comparator) - Method in class gov.nih.nlm.mms.browser.WordSearchFinderOptionsGUI.CuiSortOrderComparator
 
equals(Comparator) - Method in class gov.nih.nlm.mms.browser.WordSearchFinderOptionsGUI.StringSortOrderComparator
 
equals(Object) - Method in class gov.nih.nlm.mms.filters.AttType
This method returns true if the parameter has a source abbreviation and a attribute type that have the same values as those in this AttType.
equals(Object) - Method in class gov.nih.nlm.mms.filters.RelType
This method returns true if the parameter has a source abbreviation and a relationship type that have the same values as those in this RelType.
equals(Object) - Method in class gov.nih.nlm.umls.meta.AbstractExpandedForm
Compares the given Object with this ExpandedForm for equality.
equals(Comparator) - Method in class gov.nih.nlm.umls.meta.Concept.ByCUIComparator
 
equals(Comparator) - Method in class gov.nih.nlm.umls.meta.Concept.ByPreferredNameComparator
 
equals(Object) - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.Source
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.SourceTermType
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.AtomAttributeImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.AtomCoocurrenceImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.AtomRelationshipImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.MetaDescriptionImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.QualifierFrequencyImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipAttributeImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Returns true if the specified object is equal to this object.
equals(Object) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Returns true if the specified object is equal to this object.
eventDispatched(AWTEvent) - Method in class gov.nih.nlm.swing.GlassComponent
This absorbs KeyEvents so that they don't have any effect on the window that has the GlassComponent enabled.
exitToWelcomeGUI(JFrame) - Static method in class gov.nih.nlm.mms.MMSToolkit
Closes given JFrame and returns to the WelcomeGUI.
extra_files - Variable in class gov.nih.nlm.mms.ChecksumValidator
 

F

FINAL_PROCESSES - Static variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
FieldedStringTokenizer - class gov.nih.nlm.util.FieldedStringTokenizer.
Breaks character deliminted strings into constituent fields.
FieldedStringTokenizer(String, String) - Constructor for class gov.nih.nlm.util.FieldedStringTokenizer
Instantiates a FieldedStringTokenizer for the specified string.
FileStatistics - class gov.nih.nlm.util.FileStatistics.
Container for info about file statistics.
FileStatistics() - Constructor for class gov.nih.nlm.util.FileStatistics
Instantiates an empty FileStatistics
FileStatisticsConfiguration - interface gov.nih.nlm.umls.io.FileStatisticsConfiguration.
Generically represents a handler for creating FileStatistics information based on some kind of configuration.
Filter - interface gov.nih.nlm.mms.filters.Filter.
This is an interface with methods used to remove CUIs from the release.
FilterEnableDialog - class gov.nih.nlm.mms.FilterEnableDialog.
Prompts the user to select which filters should be enabled or disabled.
FilterEnableDialog(UserConfiguration) - Constructor for class gov.nih.nlm.mms.FilterEnableDialog
Instantiates a FilterEnableDialog.
FindAction - class gov.nih.nlm.mms.browser.FindAction.
Action used for printing a concept view.
FindAction() - Constructor for class gov.nih.nlm.mms.browser.FindAction
 
FindDialog - class gov.nih.nlm.swing.FindDialog.
Dialog to manage find on a Document shown in a JEditorPane.
FindDialog(Frame) - Constructor for class gov.nih.nlm.swing.FindDialog
---- Constructor(s) start ----------- /** Construct a FindDialog.
Finder - interface gov.nih.nlm.mms.browser.Finder.
Generically represents a way to find Concepts.
FinderHandler - interface gov.nih.nlm.util.FinderHandler.
Generically handles a find operation.
FinderManager - class gov.nih.nlm.mms.browser.FinderManager.
Manages the Finders.
FinderManager() - Constructor for class gov.nih.nlm.mms.browser.FinderManager
Instantiates an FinderManager.
FontSizeManager - class gov.nih.nlm.swing.FontSizeManager.
Resizes Fonts in a Container.
ForwardAction - class gov.nih.nlm.mms.browser.ForwardAction.
Action used for forward navigation.
ForwardAction(ConceptListManager) - Constructor for class gov.nih.nlm.mms.browser.ForwardAction
Constructor.
FullyPrintable - interface gov.nih.nlm.mms.browser.FullyPrintable.
Generically represents a component that knows how to print itself.
fakeMRDOCSuppressRows() - Static method in class gov.nih.nlm.mms.MMSToolkit
 
file_col_list_map - Variable in class gov.nih.nlm.umls.io.InputStreamFileStatisticsConfiguration
 
file_desc_map - Variable in class gov.nih.nlm.umls.io.InputStreamFileStatisticsConfiguration
 
file_ext - Static variable in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
 
file_names - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
file_names - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
find() - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Searches the text displayed in the JEditorPane for the given search_term.
find() - Method in class gov.nih.nlm.mms.browser.JEditorPaneFinderHandler
Initiate a find or find next operation, whatever applies.
find() - Method in interface gov.nih.nlm.util.FinderHandler
Executes the find operation.
findAncestorContext(Context, String) - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Looks up the given ptr in the appropriate index files and returns the matching ancestor.
findAtomByAui(String) - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Looks up the given aui in the AUI_MRCONSO.x index file and returns the Atom that contains the given aui.
findChildContexts(Context) - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Looks up the given Context's ptr + aui in the appropriate index files and returns the Contexts with matching ptrs.
findConceptByAui(String) - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Looks up the given aui in the AUI_MRCONSO.x index file and returns the Concept that contains the given aui.
findConceptByCui(String) - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Looks up the given cui in MRCONSO and returns the Concept associated with the given cui.
findConceptsByNormWords(String[]) - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Looks up the given normalized words in the appropriate index files and returns the Concepts whose Strings contain all of the words.
findConceptsByWords(String[]) - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Looks up the given words in the appropriate index files and returns the Concepts whose Strings contain all of the words.
findSiblingContexts(Context) - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Looks up the given Context's ptr in the appropriate index files and returns the Contexts with matching ptrs.
finder_manager - Variable in class gov.nih.nlm.mms.browser.ConceptListManager
 
fireCutDoneinCutMode() - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Informs listeners that a cut was appropriately done in cut mode.
fireCutDoneinPasteMode() - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Informs listeners that a cut was illegally attempted in paste mode.
fireDataChanged() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Enables filters to inform listeners of data changed event.
fireDataChanged() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Enables filters to inform listeners of data changed event.
fireDataChanged() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Enables filters to inform listeners of data changed event.
fireDataChanged() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Enables filters to inform listeners of data changed event.
fireDataChanged() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Enables filters to inform listeners of data changed event.
fireNotUndoableDataChanged() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Enables filters to indicate that data has changed without notifying the listeners or making this change undoable.
fireNotUndoableDataChanged() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Enables filters to indicate that data has changed without notifying the listeners or making this change undoable.
fireNotUndoableDataChanged() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Enables filters to indicate that data has changed without notifying the listeners or making this change undoable.
fireNotUndoableDataChanged() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Enables filters to indicate that data has changed without notifying the listeners or making this change undoable.
fireNotUndoableDataChanged() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Enables filters to indicate that data has changed without notifying the listeners or making this change undoable.
firePasteDoneinCutMode() - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Informs listeners that a paste was illegally attempted in cut mode
firePasteDoneinPasteMode() - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Informs listeners that a paste was appropriately done in paste mode
fireProgressEvent(int, String) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Fires a ProgressEvent.
fireSourcesToRemoveChanged() - Method in class gov.nih.nlm.mms.MetamorphoSys
Fires a SourcesToRemoveEvent to inform all listening filters to respond to the change in the sources to remove list.
fireSourcesToRemoveChanged() - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Fires a SourcesToRemoveEvent to inform all listening filters to respond to the change in the sources to exclude list.
fireTableSortFinished() - Method in class gov.nih.nlm.swing.SortableJTable
Informs listeners that a table sort has finished.
fireTableSortStarted() - Method in class gov.nih.nlm.swing.SortableJTable
Informs listeners that a table sort has started.
flush(String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
 
focusGained(FocusEvent) - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Provides means to keep focus on the PrecedenceFilter so as not to leave the filter when a cut has not yet been pasted.
focusLost(FocusEvent) - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Provides means to keep focus on the PrecedenceFilter so as not to leave the filter when a cut has not yet been pasted.
font_family - Variable in class gov.nih.nlm.mms.browser.AbstractConceptView
 
font_family - Variable in class gov.nih.nlm.mms.browser.AbstractFinder
 
font_point_size - Variable in class gov.nih.nlm.mms.browser.AbstractConceptView
 
font_point_size - Variable in class gov.nih.nlm.mms.browser.AbstractFinder
 
forceNewInstance(Class) - Method in class gov.nih.nlm.util.ObjectXMLSerializer
This method is responsible for finding a constructor and forcing it to create an intitial object.
forward() - Method in class gov.nih.nlm.mms.browser.ConceptListManager
Moves the concept list forwards by one.
frame - Variable in class gov.nih.nlm.util.PrintPreviewAction
 
freezePane(int) - Method in class gov.nih.nlm.swing.XTabbedPane
Indicates that the tabbed pane at the given index should be frozen and not be permitted to be dragged and dropped.
fromXML(String) - Method in class gov.nih.nlm.util.ObjectXMLSerializer
Creates an object from the XML representation indicated by the specified file name.
fromXML(String, boolean) - Method in class gov.nih.nlm.util.ObjectXMLSerializer
Creates an object from the XML representation indicated by the specified file name.
fromXML(Reader) - Method in class gov.nih.nlm.util.ObjectXMLSerializer
Creates an object from the XML representation indicated by the specified Reader.
fromXML(Reader, boolean) - Method in class gov.nih.nlm.util.ObjectXMLSerializer
Creates an object from the XML representation indicated by the specified Reader.
from_rsab - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
from_vsab - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 

G

GRID_INSETS - Static variable in interface gov.nih.nlm.swing.SwingConstants
When using GridBagLayout, this should be the default insets setting around the components in the layout.
GUIConfigurable - interface gov.nih.nlm.mms.GUIConfigurable.
Generically represents an object that can be configured by the MetamorphoSysGUI.
GUIConfigurableRedoHandler - class gov.nih.nlm.mms.GUIConfigurableRedoHandler.
Handles redoing regular actions in the GUI.
GUIConfigurableRedoHandler(GUIConfigurable, MetamorphoSysGUI) - Constructor for class gov.nih.nlm.mms.GUIConfigurableRedoHandler
Instantiates a GUIConfigurableRedoHandler.
GUIConfigurableUndoHandler - class gov.nih.nlm.mms.GUIConfigurableUndoHandler.
Handles undoing regular actions in the GUI.
GUIConfigurableUndoHandler(GUIConfigurable, MetamorphoSysGUI) - Constructor for class gov.nih.nlm.mms.GUIConfigurableUndoHandler
Instantiates a GUIConfigurableUndoHandler.
GlassComponent - class gov.nih.nlm.swing.GlassComponent.
Used to block access to a frame by placing it on the glass pane.
GlassComponent(Component) - Constructor for class gov.nih.nlm.swing.GlassComponent
Instantiates a GlassComponent with the specified root component.
GlassPaneListener - interface gov.nih.nlm.swing.GlassPaneListener.
Generically represents a listener for enabling or disabling glass pane.
get() - Method in class gov.nih.nlm.mms.ConceptQueue
Removes a Concept from the queue, blocks if the queue is empty afterwards.
get() - Method in class gov.nih.nlm.mms.IndexEntryQueue
Removes a IndexEntry from the queue, blocks if the queue is empty afterwards.
get(Object, Object) - Method in class gov.nih.nlm.util.MultiMap
Returns the value for the key, using the specified "top" key.
getAbbreviation() - Method in class gov.nih.nlm.umls.meta.AdditionalRelationshipLabel
Returns the abbreviation.
getAbbreviation() - Method in class gov.nih.nlm.umls.meta.AttributeName
Returns the abbreviation.
getAbbreviation() - Method in class gov.nih.nlm.umls.meta.CoocurrenceType
Returns the abbreviation.
getAbbreviation() - Method in interface gov.nih.nlm.umls.meta.ExpandedForm
Return the abbreviation.
getAbbreviation() - Method in class gov.nih.nlm.umls.meta.Language
Returns the abbreviation.
getAbbreviation() - Method in class gov.nih.nlm.umls.meta.RelationshipLabel
Returns the abbreviation.
getAbbreviation() - Method in class gov.nih.nlm.umls.meta.SemanticTypeGroup
Returns the abbreviation.
getAbbreviation() - Method in class gov.nih.nlm.umls.meta.SourceIdentifierType
Returns the abbreviation.
getAbbreviation() - Method in class gov.nih.nlm.umls.meta.StringType
Returns the abbreviation.
getAbbreviation() - Method in class gov.nih.nlm.umls.meta.Suppressible
Returns the abbreviation.
getAbbreviation() - Method in class gov.nih.nlm.umls.meta.TermStatus
Returns the abbreviation.
getAbbreviation() - Method in class gov.nih.nlm.umls.meta.TermType
Returns the abbreviation.
getAbbreviation() - Method in class gov.nih.nlm.umls.meta.TermTypeGroup
Returns the abbreviation.
getActiveFilters() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns the List of active Filters.
getAddUnicodeBOM() - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI
Indicates if the UTF8 Byte Order Mark (BOM) should be prepended to the output MRCXT.RRF.
getAdditionalRelationshipLabel(String) - Static method in class gov.nih.nlm.umls.meta.AdditionalRelationshipLabel
Returns the AdditionalRelationshipLabel for the specified abbreviation.
getAdditionalRelationshipLabel() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the AdditionalRelationshipLabel (RELA).
getAdditionalRelationshipLabel() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Returns the AdditionalRelationshipLabel (RELA).
getAdditionalRelationshipLabel() - Method in interface gov.nih.nlm.umls.meta.Context
Returns the AdditionalRelationshipLabel (RELA) from the context member to its parent.
getAdditionalRelationshipLabel() - Method in interface gov.nih.nlm.umls.meta.ContextMember
Returns the AdditionalRelationshipLabel (RELA) from the context member to its parent.
getAdditionalRelationshipLabel() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the AdditionalRelationshipLabel (RELA).
getAdditionalRelationshipLabel() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns the AdditionalRelationshipLabel (RELA).
getAdditionalRelationshipLabel() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns the AdditionalRelationshipLabel (RELA).
getAdditionalRelationshipLabel() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Returns the AdditionalRelationshipLabel (RELA).
getAdditionalRelationshipLabel() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns the AdditionalRelationshipLabel (RELA) from the context member to its parent.
getAdditionalRelationshipLabel() - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Returns the AdditionalRelationshipLabel (RELA) from the context member to its parent.
getAdditionalRelationshipLabel() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the AdditionalRelationshipLabel (RELA).
getAdditionalRelationshipLabel() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the AdditionalRelationshipLabel (RELA).
getAdditionalRelationshipLabels() - Static method in class gov.nih.nlm.umls.meta.AdditionalRelationshipLabel
Return all AdditionalRelationshipLabels.
getAdditionalRelationshipLabelsAsList() - Static method in class gov.nih.nlm.umls.meta.AdditionalRelationshipLabel
Return all AdditionalRelationshipLabels as a List.
getAllColumnStatistics() - Method in class gov.nih.nlm.util.FileStatistics
Returns the ColumnStatistics for the file.
getAmbiguousStringIdentifiers() - Method in interface gov.nih.nlm.umls.io.MetathesaurusInputStream
Returns the complete list of suis from the AMBIGSUI list.
getAmbiguousStringIdentifiers() - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
Returns the complete list of suis from the AMBIGSUI list.
getAmbiguousStringIdentifiers() - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
Returns the complete list of suis from the AMBIGSUI list.
getAmbiguousStringIdentifiersAsList() - Method in interface gov.nih.nlm.umls.io.MetathesaurusInputStream
Returns the complete list of suis from the AMBIGSUI list.
getAmbiguousStringIdentifiersAsList() - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
Returns the complete list of suis from the AMBIGSUI list.
getAmbiguousStringIdentifiersAsList() - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
Returns the complete list of suis from the AMBIGSUI list.
getAmbiguousTermIdentifiers() - Method in interface gov.nih.nlm.umls.io.MetathesaurusInputStream
Returns the complete list of terms from the AMBIGLUI list.
getAmbiguousTermIdentifiers() - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
Returns the complete list of terms from the AMBIGLUI list.
getAmbiguousTermIdentifiers() - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
Returns the complete list of terms from the AMBIGLUI list.
getAmbiguousTermIdentifiersAsList() - Method in interface gov.nih.nlm.umls.io.MetathesaurusInputStream
Returns the complete list of terms from the AMBIGLUI list.
getAmbiguousTermIdentifiersAsList() - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
Returns the complete list of terms from the AMBIGLUI list.
getAmbiguousTermIdentifiersAsList() - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
Returns the complete list of terms from the AMBIGLUI list.
getAncestorMembers() - Method in interface gov.nih.nlm.umls.meta.Context
Returns only the ContextMembers that have the context member label (CXL) of "ANC" or self.
getAncestorMembers() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns only the ContextMembers that have the context member label (CXL) of "ANC" or self.
getAncestorMembers() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns only the ContextMembers that have the context member label (CXL) of "ANC" or self.
getAncestorMembers() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns only the ContextMembers that have the context member label (CXL) of "ANC" or self.
getAncestorMembersAsList() - Method in interface gov.nih.nlm.umls.meta.Context
Returns only the ContextMembers that have the context member label (CXL) of "ANC" or self.
getAncestorMembersAsList() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns only the ContextMembers that have the context member label (CXL) of "ANC" or self.
getAncestorMembersAsList() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns only the ContextMembers that have the context member label (CXL) of "ANC" or self.
getAncestorMembersAsList() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns only the ContextMembers that have the context member label (CXL) of "ANC" or self.
getAncillaryFile(String) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns a Reader over the specified ancillary file.
getAncillaryFile(String) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns a Reader for the given ancillary file.
getAncillaryFileNames() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns a String[] of all the ancillary file names.
getAncillaryFileNames() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns a String[] of all the ancillary file names.
getApplicationBuildDate() - Static method in class gov.nih.nlm.mms.MMSToolkit
Returns the application timestamp from MMSYS/config/timestamp.dat.
getApplicationConfiguration() - Method in class gov.nih.nlm.mms.MetamorphoSys
Returns the ApplicationConfiguration.
getApplicationConfiguration() - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Returns the ApplicationConfiguration.
getApplicationVersion() - Static method in class gov.nih.nlm.mms.MMSToolkit
Returns the application version from MMSYS/config/version.dat.
getAtn() - Method in interface gov.nih.nlm.umls.meta.Attribute
Returns the AttributeName (ATN).
getAtn() - Method in interface gov.nih.nlm.umls.meta.AttributeValue
Returns the AttributeName (ATN).
getAtn() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Shorthand for AttributeImpl.getAttributeName().
getAtn() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Shorthand for AttributeValueImpl.getAttributeName().
getAtnl() - Method in class gov.nih.nlm.umls.meta.Source
Returns the attribute names as a comma (,) separated list of attribute name abbreviations (ATNL).
getAtnl() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the attribute names as a comma (,) separated list of attribute name abbreviations (ATNL).
getAtnl() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getAttributeNamesAsString().
getAtom() - Method in interface gov.nih.nlm.umls.meta.AtomElement
Returns the Atom to which this element is connected.
getAtom() - Method in interface gov.nih.nlm.umls.meta.AttributeContext
Returns the Atom for this AttributeContext.
getAtom() - Method in class gov.nih.nlm.umls.meta.impl.AtomAttributeImpl
Returns the Atom this AtomAttribute is connected to.
getAtom() - Method in class gov.nih.nlm.umls.meta.impl.AtomCoocurrenceImpl
Returns the Atom this AtomCoocurrence is connected to.
getAtom() - Method in class gov.nih.nlm.umls.meta.impl.AtomRelationshipImpl
Returns the Atom this Relationship is connected to.
getAtom() - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Returns the Atom for this AttributeContext.
getAtom() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns the Atom this Context is connected to.
getAtom() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Returns the Atom this CoocurrenceGroup is connected to.
getAtom() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Returns the Atom related to this Definition.
getAtom() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Returns the Atom related to this Locator.
getAtom() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the Atom this Relationship is connected to.
getAtom() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns the Atom this SourceContext is connected to.
getAtom() - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Returns the Atom for this StringContext.
getAtomIdentifier() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the atom unique identifier (AUI).
getAtomIdentifier() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the atom identifier for the first atom (AUI1).
getAtomIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns the atom identifier for the first atom (AUI1).
getAtomIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the atom unique identifier (AUI) related to this Atom.
getAtomMappings() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns all AtomMappings.
getAtomMappings() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns all AtomMappings.
getAtomMappingsAsList() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns all AtomMappings as a List.
getAtomMappingsAsList() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns all AtomMappings as a List.
getAtoms(Concept, String) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Returns Atoms from the MRCON and MRSO files with the given cui and adds them to the current Concept.
getAtoms(Concept, String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Instantiates Atoms from the MRCONSO.RRF file matching the specified CUI and adds them to the current Concept.
getAtoms() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Atoms.
getAtoms(Restrictor) - Method in interface gov.nih.nlm.umls.meta.Concept
Returns a subset of this Concept's Atoms.
getAtoms() - Method in interface gov.nih.nlm.umls.meta.StringInfo
Returns all Atoms.
getAtoms() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Atoms.
getAtoms(Restrictor) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns a subset of this Concept's Atoms.
getAtoms() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Atoms.
getAtoms(Restrictor) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns a subset of this Concept's Atoms.
getAtoms() - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Returns all Atoms.
getAtomsAsList() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Atoms as a List.
getAtomsAsList() - Method in interface gov.nih.nlm.umls.meta.StringInfo
Returns all Atoms as a List.
getAtomsAsList() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Atoms as a List.
getAtomsAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Atoms as a List.
getAtomsAsList() - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Returns all Atoms as a List.
getAttributeContexts() - Method in interface gov.nih.nlm.umls.meta.StringAttribute
Returns all AttributeContexts.
getAttributeContexts() - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Returns all AttributeContexts.
getAttributeContextsAsList() - Method in interface gov.nih.nlm.umls.meta.StringAttribute
Returns all AttributeContexts as a List.
getAttributeContextsAsList() - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Returns all AttributeContexts as a List.
getAttributeIdentifier() - Method in interface gov.nih.nlm.umls.meta.AttributeElement
Returns the unique identifier (ATUI).
getAttributeIdentifier() - Method in interface gov.nih.nlm.umls.meta.SemanticType
Returns the unique identifier (ATUI).
getAttributeIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Returns the unique identifier (ATUI).
getAttributeIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Returns the unique identifier (ATUI).
getAttributeIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Returns the unique identifier (ATUI).
getAttributeIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Returns the unique identifier (ATUI).
getAttributeIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Returns the unique identifier (ATUI).
getAttributeName() - Method in interface gov.nih.nlm.umls.meta.Attribute
Returns the AttributeName (ATN).
getAttributeName(String) - Static method in class gov.nih.nlm.umls.meta.AttributeName
Returns the AttributeName for the specified abbreviation.
getAttributeName() - Method in interface gov.nih.nlm.umls.meta.AttributeValue
Returns the AttributeName (ATN).
getAttributeName() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the AttributeName (MAPATN).
getAttributeName() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Returns the AttributeName (ATN).
getAttributeName() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Returns the AttributeName (ATN).
getAttributeName() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the AttributeName (MAPATN).
getAttributeNames() - Static method in class gov.nih.nlm.umls.meta.AttributeName
Returns all AttributeNames.
getAttributeNames() - Method in class gov.nih.nlm.umls.meta.Source
Get the AttributeNames for this Source.
getAttributeNames() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Get the AttributeNames for this Source.
getAttributeNames() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Get the AttributeNames for this SourceMetaDescription.
getAttributeNamesAsList() - Static method in class gov.nih.nlm.umls.meta.AttributeName
Returns all AttributeNames as a List.
getAttributeNamesAsList() - Method in class gov.nih.nlm.umls.meta.Source
Returns the AttributeNames as a List.
getAttributeNamesAsList() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the AttributeNames as a List.
getAttributeNamesAsList() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the AttributeNames as a List.
getAttributeNamesAsString() - Method in class gov.nih.nlm.umls.meta.Source
Returns the attribute names as a comma (,) separated list of attribute name abbreviations (ATNL).
getAttributeNamesAsString() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the attribute names as a comma (,) separated list of attribute name abbreviations (ATNL).
getAttributeNamesAsString() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the attribute names as a comma (,) separated list of attribute name abbreviations (ATNL).
getAttributeTypeAtRow(int) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method compensates for the AttTypes with sources to be excluded that are therefore not displayed in the attribute type table.
getAttributeTypes() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method returns the List containing all attribute types.
getAttributeTypes(Source) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method returns the List containing all AttTypes that share the same source.
getAttributeTypesAsSet(Source) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method returns the Set containing all AttTypes that share the same Source.
getAttributeTypesToRemove() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method returns the List containing all AttributeTypes to be excluded.
getAttributeValue() - Method in interface gov.nih.nlm.umls.meta.Attribute
Returns the attribute value.
getAttributeValue() - Method in interface gov.nih.nlm.umls.meta.AttributeValue
Returns the attribute value (ATV).
getAttributeValue() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the attribute value (MAPATV).
getAttributeValue() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Returns the attribute value (ATV).
getAttributeValue() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Returns the attribute value (ATV).
getAttributeValue() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the attribute value (MAPATV).
getAttributeValues() - Method in interface gov.nih.nlm.umls.meta.AttributeContext
Returns all AttributeValues.
getAttributeValues() - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Returns all AttributeValues.
getAttributeValuesAsList() - Method in interface gov.nih.nlm.umls.meta.AttributeContext
Returns all AttributeValues as a List.
getAttributeValuesAsList() - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Returns all AttributeValues as a List.
getAttributes(Concept, String) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Returns Attributes from the MRSAT files with the given cui and adds them to the current Concept
getAttributes(Concept, String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Gets Attributes from the MRSAT.RRF files with the given cui and adds them to the current Concept.
getAttributes() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the AtomAttributes.
getAttributes() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Attributes.
getAttributes() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns the RelationshipAttributes.
getAttributes(Restrictor) - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns a subset of this Relationship's RelationshipAttributes.
getAttributes() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Returns the AtomAttributes.
getAttributes() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Attributes.
getAttributes() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the AtomAttributes.
getAttributes() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Attributes.
getAttributes() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the RelationshipAttributes.
getAttributes(Restrictor) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns a subset of this Relationship's RelationshipAttributes.
getAttributesAsList() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the AtomAttributes as a List.
getAttributesAsList() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Attributes as a List.
getAttributesAsList() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns the RelationshipAttributes as a List.
getAttributesAsList() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Returns the AtomAttributes as a List.
getAttributesAsList() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Attributes as a List.
getAttributesAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the AtomAttributes as a List.
getAttributesAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Attributes as a List.
getAttributesAsList() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the RelationshipAttributes as a List.
getAttributesForAtom(Atom) - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the attributes with aui that matches that of the given Atom.
getAttributesForAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the attributes with aui that matches that of the given Atom.
getAttributesForAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the attributes with aui that matches that of the given Atom.
getAttributesForAtomAsList(Atom) - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the attributes with aui that matches that of the given Atom in a List.
getAttributesForAtomAsList(Atom) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the attributes with aui that matches that of the given Atom in a List.
getAttributesForAtomAsList(Atom) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the attributes with aui that matches that of the given Atom in a List.
getAttributesForRelationship(AtomRelationship) - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the attributes with aui that matches that of the given Relationship.
getAttributesForRelationship(AtomRelationship) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the attributes with aui that matches that of the given Relationship.
getAttributesForRelationship(AtomRelationship) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the attributes with aui that matches that of the given Relationship.
getAttributesForRelationshipAsList(AtomRelationship) - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the attributes with aui that matches that of the given Relationship in a List.
getAttributesForRelationshipAsList(AtomRelationship) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the attributes with aui that matches that of the given Relationship in a List.
getAttributesForRelationshipAsList(AtomRelationship) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the attributes with aui that matches that of the given Relationship in a List.
getAtui() - Method in interface gov.nih.nlm.umls.meta.AttributeElement
Returns the unique identifier (ATUI).
getAtui() - Method in interface gov.nih.nlm.umls.meta.SemanticType
Returns the unique identifier (ATUI).
getAtui() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Returns the unique identifier (ATUI).
getAtui() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Returns the unique identifier (ATUI).
getAtui() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Shorthand for DefinitionImpl.getAttributeIdentifier().
getAtui() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.getAttributeIdentifier().
getAtui() - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Shorthand for SemanticTypeImpl.getAttributeIdentifier().
getAtv() - Method in interface gov.nih.nlm.umls.meta.Attribute
Returns the attribute value (ATV).
getAtv() - Method in interface gov.nih.nlm.umls.meta.AttributeValue
Returns the attribute value (ATV).
getAtv() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Shorthand for AttributeImpl.getAttributeValue().
getAtv() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Shorthand for AttributeValueImpl.getAttributeValue().
getAui() - Method in interface gov.nih.nlm.umls.meta.Atom
Shorthand for Atom.getAtomIdentifier().
getAui() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.getAtomIdentifier().
getAui1() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the atom identifier for the first atom (AUI1).
getAui1() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Shorthand for AtomMappingImpl.getAtomIdentifier().
getAui2() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the atom identifier for the second atom (AUI2).
getAui2() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Shorthand for AtomMappingImpl.getRelatedAtomIdentifier().
getAuthority() - Static method in class gov.nih.nlm.mms.Version
Returns the package current version authority.
getAuthority() - Static method in class gov.nih.nlm.mms.browser.Version
Returns the package current version authority.
getAuthority() - Static method in class gov.nih.nlm.mms.cxt.Version
Returns the package current version authority.
getAuthority() - Static method in class gov.nih.nlm.mms.filters.Version
Returns the package current version authority.
getAuthority() - Static method in class gov.nih.nlm.swing.Version
Returns the package current version authority.
getAuthority() - Static method in class gov.nih.nlm.umls.Version
Returns the package current version authority.
getAuthority() - Static method in class gov.nih.nlm.umls.io.Version
Returns the package current version authority.
getAuthority() - Static method in class gov.nih.nlm.umls.meta.Version
Returns the package current version authority.
getAuthority() - Static method in class gov.nih.nlm.umls.meta.impl.Version
Returns the package current version authority.
getAuthority() - Static method in class gov.nih.nlm.util.Version
Returns the package current version authority.
getAutomaticSelection() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns a flag indicating whether or not "auto selection mode" is on.
getAutomaticSelection() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method is used by the AttributeTypesToRemoveListSelectionListener and indicates whether the automatic selection option on the MetamorphoSys Options dialog box has been chosen.
getAutomaticSelection() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method indicates whether the automatic_selection option has been chosen.
getAutomaticSelection() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
This method indicates whether the automatic_selection option has been chosen.
getAutomaticSelection() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Indicates whether the automatic_selection option has been chosen on the MetamorphoSys Options dialog box.
getAutomaticSelection() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method returns whether or not the automatic_selection option has been chosen on the MetamorphoSys Options dialog box.
getAutoscrollInsets() - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Provides insets that delineate the area of the table in which autoscrolling should take place.
getAverageLength() - Method in class gov.nih.nlm.util.ColumnStatistics
Returns the average length.
getBackwardStack() - Method in class gov.nih.nlm.mms.browser.ConceptList
Returns a Stack of Concepts populated only with cuis.
getBorderInsets(Component) - Method in class gov.nih.nlm.swing.CenteredBackgroundBorder
 
getBrowserState() - Static method in class gov.nih.nlm.mms.browser.BrowserState
Returns the singleton reference to the BrowserState.
getBrowserState(File) - Static method in class gov.nih.nlm.mms.browser.BrowserState
Returns the singleton reference to the BrowserState.
getBuildChildren() - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI
Indicates if context children should be written to MRCXT.RRF.
getBuildDate() - Static method in class gov.nih.nlm.mms.MMSToolkit
Returns build date of the UMLS from release.dat.
getBuildSiblings() - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI
Indicates if context siblings should be written to MRCXT.RRF.
getByteCount() - Method in class gov.nih.nlm.util.FileStatistics
Returns the byte count.
getCUIsRemovedFromSubset() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
List of SUBX cuis.
getCUIsRemovedFromSubset() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
List of SUBX cuis.
getCenc() - Method in class gov.nih.nlm.umls.meta.Source
Returns the ISO character encoding (CENC).
getCenc() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the ISO character encoding (CENC).
getCenc() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getCharacterEncoding().
getCfr() - Method in class gov.nih.nlm.umls.meta.Source
Returns the frequency of concepts (CFR).
getCfr() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the frequency of concepts (CFR).
getCfr() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getConceptFrequency()
getChangeFile(String) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns the Reader for the given CHANGE file.
getChangeFile(String) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns the Reader for the given CHANGE file.
getChangeFileNames() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns a String[] of all the file names in the CHANGE directory.
getChangeFileNames() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns a String[] of all the file names in the CHANGE directory.
getChangeKey() - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Returns the change key which identifies what changed (CHANGEKEY).
getChangeKey() - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Returns the change key which identifies what changed (CHANGEKEY).
getChangeType() - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Returns the change type which identifies what changed (CHANGETYPE).
getChangeType() - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Returns the change type which identifies what changed (CHANGETYPE).
getChangeValue() - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Returns the new value for what changed (CHANGEVALUE).
getChangeValue() - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Returns the new value for what changed (CHANGEVALUE).
getCharacterEncoding() - Method in class gov.nih.nlm.umls.meta.Source
Returns the ISO character encoding (CENC).
getCharacterEncoding() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the ISO character encoding (CENC).
getCharacterEncoding() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the ISO character encoding (CENC).
getCharsEqualsBytes() - Method in class gov.nih.nlm.util.FileStatistics
Indicates if the character encoding is one byte per character or not.
getChildMembers() - Method in interface gov.nih.nlm.umls.meta.Context
Returns only the ContextMembers that have the context member label (CXL) of "CHD" or child.
getChildMembers() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns only the ContextMembers that have the context member label (CXL) of "CHD" or child.
getChildMembers() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns only the ContextMembers that have the context member label (CXL) of "CHD" or child.
getChildMembers() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns only the ContextMembers that have the context member label (CXL) of "CHD" or child.
getChildMembersAsList() - Method in interface gov.nih.nlm.umls.meta.Context
Returns only the ContextMembers that have the context member label (CXL) of "CHD" or child.
getChildMembersAsList() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns only the ContextMembers that have the context member label (CXL) of "CHD" or child.
getChildMembersAsList() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns only the ContextMembers that have the context member label (CXL) of "CHD" or child.
getChildMembersAsList() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns only the ContextMembers that have the context member label (CXL) of "CHD" or child.
getChooserType() - Method in interface gov.nih.nlm.mms.MetamorphoSysInputStream
Indicates the type of file accepted by the file chooser.
getChooserType() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Indicates the type of file accepted by the JFileChooser.
getChooserType() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Indicates the type of file accepted by the JFileChooser.
getCitation() - Method in class gov.nih.nlm.umls.meta.Source
Returns the citation information (SCIT).
getCitation() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the source citation (SCIT).
getCitation() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the source citation (SCIT).
getCoa() - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Returns the coocurrence attribute value (COA).
getCoa() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Shorthand for CoocurrenceImpl.getCoocurrenceAttribute().
getCode() - Method in interface gov.nih.nlm.umls.meta.Atom
Return the code (CODE).
getCode() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Return the code (CODE).
getCof() - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Returns the coocurrence frequency (COF).
getCof() - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Returns the CoocurrenceContext frequency (COF).
getCof() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Shorthand for CoocurrenceContextImpl.getCoocurrenceContextFrequency().
getCof() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Shorthand for CoocurrenceImpl.getCoocurrenceFrequency().
getColor() - Method in interface gov.nih.nlm.mms.GUIConfigurable
Returns the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Returns the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Indicates the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Returns the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Indicates the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Returns the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Returns the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Returns the Color used to represent this filter.
getColor() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
Method indicates the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Method indicates the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Method indicates the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Method indicates the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
Method indicates the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Returns the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.filters.RxNormFilter
Method indicates the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Returns the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method indicates the Color that should be used to display the name.
getColor() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Returns the Color that should be used to display the name.
getColumnClass(int) - Method in class gov.nih.nlm.mms.filters.PrecedenceTableModel
Returns the Class of the Objects in column with index column_number.
getColumnClass(int) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveTableModel
Returns the Class of the Objects in column column_number.
getColumnClass(int) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveTableModel
Returns the Class of the objects in the given column.
getColumnClass(int) - Method in class gov.nih.nlm.swing.TableMap
Returns the column class from the underlying model.
getColumnCount() - Method in class gov.nih.nlm.mms.filters.PrecedenceTableModel
Returns the number of columns in the precedence table.
getColumnCount() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveTableModel
Returns the number of columns in the semantic types to exclude table.
getColumnCount() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveTableModel
Returns the number of columns in the sources to exclude table.
getColumnCount() - Method in class gov.nih.nlm.swing.TableMap
Returns the column count from the underlying model.
getColumnName(int) - Method in class gov.nih.nlm.mms.filters.PrecedenceTableModel
Returns the name of a column in the precedence table.
getColumnName(int) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveTableModel
Returns the name of a column in the semantic types to exclude table.
getColumnName(int) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveTableModel
Returns the name of a column in the sources to exclude table
getColumnName(int) - Method in class gov.nih.nlm.swing.TableMap
Returns the column name from the underlying model.
getColumnName() - Method in class gov.nih.nlm.util.ColumnStatistics
Returns the column name.
getColumnStatistics(String) - Method in class gov.nih.nlm.util.FileStatistics
Returns the statistics for a particular column of the file.
getColumnTextFromFileStatistics(FileStatistics) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Returns a MRCOLS line.
getColumnTextFromFileStatistics(FileStatistics) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Returns the MRCOLS.RRF lines for the specified FileStatistics.
getComparator() - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Returns the Comparator that will be used for sorting the word search results.
getComponentForTab(GUIConfigurable) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Returns the GUI Component for the specified Filter.
getComponentForTab(GUIConfigurable) - Method in class gov.nih.nlm.mms.browser.FinderManager
Returns the GUI Component for the specified Filter.
getComponentForTab(GUIConfigurable) - Method in class gov.nih.nlm.mms.browser.ReportsManager
Returns the GUI Component for the specified Filter.
getComponentHistories(Concept, String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Gets ComponentHistorys from the MRHIST.RRF file with the given cui and adds them to the current Concept.
getComponentHistories() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the ComponentHistorys.
getComponentHistories() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the ComponentHistorys.
getComponentHistories() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the ComponentHistorys.
getComponentHistoriesAsList() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the ComponentHistorys as a List.
getComponentHistoriesAsList() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the ComponentHistorys as a List.
getComponentHistoriesAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the ComponentHistorys as a List.
getComputeXC() - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI
Indicates if the XC flag should be computed for MRCXT.RRF.
getConcept() - Method in class gov.nih.nlm.umls.io.RichMRFilesSingleConceptInputStream
Returns a single Concept from a set of Rich Release files.
getConcept() - Method in interface gov.nih.nlm.umls.meta.ConceptElement
Returns the Concept that holds this ConceptElement.
getConcept() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Returns the Concept that holds this Attribute.
getConcept() - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Returns the Concept that holds this ComponentHistory.
getConcept() - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Returns the Concept that holds this ContextGroup.
getConcept() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns the Concept that holds this Context
getConcept() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Returns the Concept that holds this CoocurrenceGroup.
getConcept() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Returns the Concept that holds this Coocurrence.
getConcept() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Returns the Concept that holds this Definition.
getConcept() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Returns the Concept that holds this Locator.
getConcept() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the Concept that holds this Mapping (CUI).
getConcept() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the Concept that holds this Atom.
getConcept() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the Concept that holds this Relationship.
getConcept() - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Returns the Concept that holds this SemanticType.
getConcept() - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Returns the Concept that holds this TermAttribute.
getConcept() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Returns the Concept that holds this Term.
getConceptContentSelectors() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns the List of active ConceptContentSelectors.
getConceptFrequency() - Method in class gov.nih.nlm.umls.meta.Source
Returns the frequency of concepts (CFR).
getConceptFrequency() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the frequency of concepts (CFR).
getConceptFrequency() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the frequency of concepts (CFR).
getConceptIdentifier() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the concept identifier for the first atom (CUI1).
getConceptIdentifier() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the concept unique identifier (CUI) for the Concept.
getConceptIdentifier() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Returns the concept identifier for the first concept (CUI1).
getConceptIdentifier() - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Returns a String representation of the CUI.
getConceptIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns the concept identifier for the first atom (CUI1).
getConceptIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the concept unique identifier (CUI) for the Concept that holds this Concept.
getConceptIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Returns the concept identifier for the first concept (CUI1).
getConceptIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Returns a String representation of the CUI.
getConceptIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the concept unique identifier (CUI) for the Concept that holds this Concept.
getConceptList() - Method in class gov.nih.nlm.mms.browser.ConceptListManager
Returns the ConceptList.
getConceptListForDirectory(String) - Method in class gov.nih.nlm.mms.browser.BrowserState
Returns the ConceptList associated with the given directory.
getConceptListManager() - Method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
Returns a reference to the ConceptListManager.
getConceptManipulators() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns the List of active ConceptManipulators.
getConceptMappings() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns all ConceptMappings.
getConceptMappings() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns all ConceptMappings.
getConceptMappingsAsList() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns all ConceptMappings as a List.
getConceptMappingsAsList() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns all ConceptMappings as a List.
getConceptProgress() - Method in interface gov.nih.nlm.mms.ConceptInputStream
Return an int between 0 and 100 indicating how far along the input stream is in reading Concepts.
getConceptProgress() - Method in interface gov.nih.nlm.mms.MetamorphoSysInputStream
Return an int between 0 and 100 indicating how far along the input stream is in reading Concepts.
getConceptProgress() - Method in interface gov.nih.nlm.umls.io.ConceptInputStream
Returns the percentage of Concepts that have been processed so far.
getConceptProgress() - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Returns the percentage of MRCON lines that have been processed.
getConceptProgress() - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Returns the percentage of MRCONSO lines that have been processed.
getConceptSelectors() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns the List of active ConceptSelectors.
getConceptViews() - Method in class gov.nih.nlm.mms.browser.ReportsManager
Returns a Set of the ConceptViews.
getConceptWithAtomsOnly() - Method in class gov.nih.nlm.umls.io.RichMRFilesSingleConceptInputStream
Returns a single Concept from a set of Rich Release files.
getConfigDirectory() - Method in class gov.nih.nlm.mms.ApplicationConfiguration
Returns the path to the configuration directory.
getConfiguration() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method returns the default ApplicationConfiguration.
getConfigurationDetails() - Method in interface gov.nih.nlm.mms.ConceptInputStream
Returns a String describing the configuration details.
getConfigurationDetails() - Method in interface gov.nih.nlm.mms.ConceptOutputStream
Returns a String describing the configuration details.
getConfigurationDetails() - Method in interface gov.nih.nlm.mms.Configurable
Method returns a String detailing the user selections on the filter.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.NLMFileMetamorphoSysInputStream
Returns a message for the log.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Returns a message for the log.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Returns details of the configuration for use in a log.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Returns a message for the log.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Returns a message for the log.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Method returns a String detailing the user selections on the filter.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Method returns a String detailing the user selections on the filter.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
Method returns a list of the attribute types to be excluded for display in the configuration file.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Returns the statement that should appear in the subset log file regarding this Filter.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Method returns a list of the languages that were excluded for display in the configuration file.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Method returns a list of the precedence order for display in the configuration file.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
Method returns a list of the relationship types to be excluded for display in the configuration file.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Returns configuration details for use in mmsys.log.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.filters.RxNormFilter
Returns the statement that should appear in the subset log file regarding this Filter.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Returns the configuration details for mmsys.log.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method returns a list of the sources to be excluded and sources to be kept for display in the configuration file.
getConfigurationDetails() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Returns configuration details for use in mmsys.log.
getConfigurationFilename() - Method in class gov.nih.nlm.mms.DefaultSubset
Returns the name of the configuration file to use.
getConfirmDefaultRemovableTermgroups() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Returns a list of SourceTermTypes that have been confirmed by the user via a dialog box to be removable.
getConfirmDefaultSuppressibleTermgroups() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Returns a list of SourceTermTypes that have been confirmed by the user via a dialog box to be suppressible.
getContentContact() - Method in class gov.nih.nlm.umls.meta.Source
Returns the content contact information (SCC).
getContentContact() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the content contact information (SCC).
getContentContact() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the content contact information (SCC).
getContentType() - Method in interface gov.nih.nlm.mms.browser.ConceptView
Returns the content type used for the JEditorPane display.
getContentType() - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Returns the content type used for the JEditorPane display.
getContentType() - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Returns the content type used for the JEditorPane display.
getContentType() - Method in class gov.nih.nlm.mms.browser.TreeBrowserFinder
Returns the content type used for the JEditorPane display.
getContentView() - Method in interface gov.nih.nlm.umls.meta.ContentViewElement
Returns tbe ContentView definition for this ConceptElement (CVF).
getContentView() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Returns tbe ContentView definition for this Attribute (CVF).
getContentView() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Returns tbe ContentView definition for this AttributeValue (CVF).
getContentView() - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Returns tbe ContentView definition for this Locator (CVF).
getContentView() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns tbe ContentView definition for this Context (CVF).
getContentView() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Returns tbe ContentView definition for this CoocurrenceContext (CVF).
getContentView() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Returns tbe ContentView definition for this Coocurrence (CVF).
getContentView() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Returns tbe ContentView definition for this Definition (CVF).
getContentView() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Returns tbe ContentView definition for this Locator (CVF).
getContentView() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns tbe ContentView definition for this Mapping (CVF).
getContentView() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns tbe ContentView definition for this Atom (CVF).
getContentView() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns tbe ContentView definition for this Relationship (CVF).
getContentView() - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Returns tbe ContentView definition for this SemanticType (CVF).
getContentView() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns tbe ContentView definition for this SourceContext (CVF).
getContextGroup() - Method in interface gov.nih.nlm.umls.meta.StringContext
Returns the ContextGroup that holds this StringContext.
getContextGroup() - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Returns the ContextGroup that holds this StringContext.
getContextGroups() - Method in interface gov.nih.nlm.umls.meta.Concept
Return the ContextGroups.
getContextGroups() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Return the ContextGroups.
getContextGroups() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Return the ContextGroups.
getContextGroupsAsList() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the ContextGroups as a List.
getContextGroupsAsList() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the ContextGroups as a List.
getContextGroupsAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the ContextGroups as a List.
getContextMembers() - Method in interface gov.nih.nlm.umls.meta.Context
Returns all ContextMembers.
getContextMembers() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns the ContextMembers.
getContextMembers() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns all ContextMembers.
getContextMembers() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns the ContextMembers.
getContextMembersAsList() - Method in interface gov.nih.nlm.umls.meta.Context
Returns all ContextMembers as a List.
getContextMembersAsList() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns the ContextMembers.
getContextMembersAsList() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns all ContextMembers as a List.
getContextMembersAsList() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns the ContextMembers.
getContextNumber() - Method in interface gov.nih.nlm.umls.meta.Context
Returns the context number (CXN).
getContextNumber() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns the context number (CXN).
getContextNumber() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns the context number (CXN).
getContextNumber() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns the context number (CXN).
getContextType() - Method in class gov.nih.nlm.umls.meta.Source
Returns the context type (CXTY).
getContextType() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the context type (CXTY).
getContextType() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the context type (CXTY).
getContexts(Concept, String) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Returns Contexts from the MRCXT files with the given cui and adds them to the current Concept.
getContexts(Concept, String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Gets Contexts from the MRCXT.RRF and MRHIER.RRF files with the given cui and adds them to this_concept.
getContexts() - Method in interface gov.nih.nlm.umls.meta.Atom
Return the Contexts.
getContexts() - Method in interface gov.nih.nlm.umls.meta.Concept
Return the Contexts.
getContexts(Restrictor) - Method in interface gov.nih.nlm.umls.meta.Concept
Returns a subset of this Concept's Contexts.
getContexts() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Return the Contexts.
getContexts() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Return the Contexts.
getContexts(Restrictor) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns a subset of this Concept's Contexts.
getContexts() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Return the Contexts.
getContexts() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Return the Contexts.
getContexts(Restrictor) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns a subset of this Concept's Contexts.
getContextsAsList() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the Contexts as a List.
getContextsAsList() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Contexts as a List.
getContextsAsList() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Returns the Contexts as a List.
getContextsAsList() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Contexts as a List.
getContextsAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the Contexts as a List.
getContextsAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Contexts as a List.
getCoocurrenceAttribute() - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Returns the coocurrence attribute value (COA).
getCoocurrenceAttribute() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Returns the coocurrence attribute value (COA).
getCoocurrenceContextFrequency() - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Returns the CoocurrenceContext frequency (COF).
getCoocurrenceContextFrequency() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Returns the CoocurrenceContext frequency (COF).
getCoocurrenceContexts() - Method in interface gov.nih.nlm.umls.meta.CoocurrenceGroup
Returns the CoocurrenceContexts.
getCoocurrenceContexts() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Returns the CoocurrenceContexts .
getCoocurrenceContextsAsList() - Method in interface gov.nih.nlm.umls.meta.CoocurrenceGroup
Returns the CoocurrenceContexts as a List.
getCoocurrenceContextsAsList() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Returns the CoocurrenceContexts as a List.
getCoocurrenceFrequency() - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Returns the coocurrence frequency (COF).
getCoocurrenceFrequency() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Returns the coocurrence frequency (COF).
getCoocurrenceGroup() - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Returns the CoocurrenceGroup that holds this CoocurrenceContext.
getCoocurrenceGroup() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Returns the CoocurrenceGroup that holds this CoocurrenceContext.
getCoocurrenceGroups() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the CoocurrenceGroups.
getCoocurrenceGroups() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the CoocurrenceGroups.
getCoocurrenceGroups() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the CoocurrenceGroups.
getCoocurrenceGroupsAsList() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the CoocurrenceGroups as a List.
getCoocurrenceGroupsAsList() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the CoocurrenceGroups as a List.
getCoocurrenceGroupsAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the CoocurrenceGroups as a List.
getCoocurrenceType() - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Returns the CoocurrenceType (COT).
getCoocurrenceType() - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Returns the CoocurrenceType (COT).
getCoocurrenceType(String) - Static method in class gov.nih.nlm.umls.meta.CoocurrenceType
Returns the CoocurrenceType for the specified abbreviation.
getCoocurrenceType() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Returns the CoocurrenceType (COT).
getCoocurrenceType() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Returns the CoocurrenceType (COT).
getCoocurrenceTypes() - Static method in class gov.nih.nlm.umls.meta.CoocurrenceType
Return an array of all CoocurrenceTypes.
getCoocurrenceTypesAsList() - Static method in class gov.nih.nlm.umls.meta.CoocurrenceType
Return an List of all CoocurrenceTypes.
getCoocurrences(Concept, String) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Returns a Coocurrences from the MRCOC file with the given cui and adds them to the current Concept.
getCoocurrences(Concept, String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Gets Coocurrences from the MRCOC.RRF file with the given cui and adds them to the current Concept.
getCoocurrences() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the Coocurrences.
getCoocurrences() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Coocurrences.
getCoocurrences(Restrictor) - Method in interface gov.nih.nlm.umls.meta.Concept
Returns a subset of this Concept's Coocurrences.
getCoocurrences() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Returns the Coocurrences.
getCoocurrences() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Coocurrences.
getCoocurrences(Restrictor) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns a subset of this Concept's Coocurrences.
getCoocurrences() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the Coocurrences.
getCoocurrences() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Coocurrences.
getCoocurrences(Restrictor) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns a subset of this Concept's Coocurrences.
getCoocurrencesAsList() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the Coocurrences as a List.
getCoocurrencesAsList() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Coocurrences as a List.
getCoocurrencesAsList() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Returns the Coocurrences as a List.
getCoocurrencesAsList() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Coocurrences as a List.
getCoocurrencesAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the Coocurrences as a List.
getCoocurrencesAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Coocurrences as a List.
getCot() - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Returns the CoocurrenceType (COT).
getCot() - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Returns the CoocurrenceType (COT).
getCot() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Shorthand for CoocurrenceContextImpl.getCoocurrenceType().
getCot() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Shorthand for CoocurrenceImpl.getCoocurrenceType().
getCui() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the concept unique identifier (CUI) for the Concept.
getCui() - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Returns a String representation of the CUI.
getCui() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Shorthand for ConceptImpl.getConceptIdentifier().
getCui() - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Returns a String representation of the CUI.
getCui() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Shorthand for PlaceholderConcept.getConceptIdentifier().
getCui1() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the concept identifier of the first atom as it was in the specified release version (CUI1).
getCui1() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Returns the concept identifier for the first concept (CUI1).
getCui1() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns the concept identifier for the first atom (CUI1).
getCui1() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Shorthand for ConceptMappingImpl.getConceptIdentifier().
getCui2() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the concept identifier for the second concept (CUI2).
getCui2() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Returns the concept identifier for the second concept (CUI2).
getCui2() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns the concept identifier for the second atom (CUI2).
getCui2() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Shorthand for ConceptMappingImpl.getRelativeConceptIdentifier().
getCurrentConcept() - Method in class gov.nih.nlm.mms.browser.ConceptList
Returns the currently displayed Concept.
getCurrentConcept() - Method in class gov.nih.nlm.mms.browser.ConceptListManager
Returns the Concept currently being viewed.
getCurrentConceptList() - Method in class gov.nih.nlm.mms.browser.BrowserState
Returns the list of viewed concepts in the currently opened directory.
getCurrentConfigurationFilename() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns the path to the current configuration file.
getCurrentDirectory() - Method in class gov.nih.nlm.mms.browser.BrowserState
Returns the current subset directory.
getCurrentFinder() - Method in class gov.nih.nlm.mms.browser.FinderManager
Returns the Finder that is currently being displayed on the JTabbedPane.
getCurrentView() - Method in class gov.nih.nlm.mms.browser.ReportsManager
Returns the ConceptView that is currently being displayed on the JTabbedPane.
getCurver() - Method in class gov.nih.nlm.umls.meta.Source
Returns the "is current version" value (CURVER).
getCurver() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the "is current version" value (CURVER).
getCurver() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the "is current version" value (CURVER).
getCutMode() - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Returns the cut mode.
getCvf() - Method in interface gov.nih.nlm.umls.meta.ContentViewElement
Returns tbe ContentView definition for this ConceptElement (CVF).
getCvf() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Shorthand for AttributeImpl.getContentView().
getCvf() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Shorthand for AttributeValueImpl.getContentView().
getCvf() - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Shorthand for ComponentHistoryImpl.getContentView().
getCvf() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Shorthand for ContextImpl.getContentView().
getCvf() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Shorthand for CoocurrenceContextImpl.getContentView().
getCvf() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Shorthand for CoocurrenceImpl.getContentView().
getCvf() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Shorthand for DefinitionImpl.getContentView().
getCvf() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.getContentView().
getCvf() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Shorthand for MappingImpl.getContentView().
getCvf() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.getContentView().
getCvf() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Shorthand for RelationshipImpl.getContentView().
getCvf() - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Shorthand for SemanticTypeImpl.getContentView().
getCvf() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Shorthand for SourceContextImpl.getContentView().
getCxl() - Method in interface gov.nih.nlm.umls.meta.ContextMember
Returns the label for this ContextMember (CXL).
getCxl() - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Shorthand for ContextMemberImpl.getLabel().
getCxn() - Method in interface gov.nih.nlm.umls.meta.Context
Returns the context number (CXN).
getCxn() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns the context number (CXN).
getCxn() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
This is a Shorthand for ContextImpl.getContextNumber()
getCxn() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
This is a shorthand for SourceContextImpl.getContextNumber()
getCxty() - Method in class gov.nih.nlm.umls.meta.Source
Returns the context type (CXTY).
getCxty() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the context type (CXTY).
getCxty() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getContextType().
getDataType() - Method in class gov.nih.nlm.util.ColumnStatistics
Returns the data type of the column.
getDataTypeLength() - Method in class gov.nih.nlm.util.ColumnStatistics
Returns the data type length of the column.
getDate() - Static method in class gov.nih.nlm.mms.Version
Returns the package current version date.
getDate() - Static method in class gov.nih.nlm.mms.browser.Version
Returns the package current version date.
getDate() - Static method in class gov.nih.nlm.mms.cxt.Version
Returns the package current version date.
getDate() - Static method in class gov.nih.nlm.mms.filters.Version
Returns the package current version date.
getDate() - Static method in class gov.nih.nlm.swing.Version
Returns the package current version date.
getDate() - Static method in class gov.nih.nlm.umls.Version
Returns the package current version date.
getDate() - Static method in class gov.nih.nlm.umls.io.Version
Returns the package current version date.
getDate() - Static method in class gov.nih.nlm.umls.meta.Version
Returns the package current version date.
getDate() - Static method in class gov.nih.nlm.umls.meta.impl.Version
Returns the package current version date.
getDate() - Static method in class gov.nih.nlm.util.Version
Returns the package current version date.
getDef() - Method in interface gov.nih.nlm.umls.meta.Definition
Returns the definition value (DEF).
getDef() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns the definition (DEF).
getDef() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns the definition (DEF).
getDef() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Shorthand for DefinitionImpl.getDefinition().
getDef() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Shorthand for STYMetaDescriptionImpl.getDefinition().
getDefaultRemovableTermgroups() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Returns an List containing all SourceTermTypes to be removed from the default termgroup list.
getDefaultSourcesToRemove() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method returns a List of all Sources to be excluded.
getDefaultSourcesToRemoveAsSet() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method returns a Set containing the default list of all Sources to be excluded.
getDefaultSubsets() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns all available DefaultSubsets.
getDefaultSubsetsAsList() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns all available DefaultSubsets as a List.
getDefaultSuppressibleTermgroups() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Returns an List containing all SourceTermTypes to be suppressed from the default termgroup list.
getDefinition() - Method in interface gov.nih.nlm.umls.meta.Definition
Returns the definition value (DEF).
getDefinition() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns the definition (DEF).
getDefinition() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns the definition (DEF).
getDefinition() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Returns the definition value (DEF).
getDefinition() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Returns the definition (DEF).
getDefinitions(Concept, String) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Returns Definitions from the MRDEF file with the given cui and adds them to the current Concept.
getDefinitions(Concept, String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Gets Definitions from the MRDEF.RRF file with the given cui and adds them to the current Concept.
getDefinitions() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the Definitions.
getDefinitions() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Definitions.
getDefinitions(Restrictor) - Method in interface gov.nih.nlm.umls.meta.Concept
Returns a subset of this Concept's Definitions.
getDefinitions() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Returns the Definitions.
getDefinitions() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Definitions.
getDefinitions(Restrictor) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns a subset of this Concept's Definitions.
getDefinitions() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the Definitions.
getDefinitions() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Definitions.
getDefinitions(Restrictor) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns a subset of this Concept's Definitions.
getDefinitionsAsList() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the Definitions as a List.
getDefinitionsAsList() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Definitions as a List.
getDefinitionsAsList() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Returns the Definitions as a List.
getDefinitionsAsList() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Definitions as a List.
getDefinitionsAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the Definitions as a List.
getDefinitionsAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Definitions as a List.
getDependentSource() - Method in class gov.nih.nlm.mms.Dependency
Returns the dependent Source.
getDependentSources(Source) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method gets all dependent sources for a given Source.
getDependentSourcesAsSet(Source) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method gets all dependent sources for a given Source.
getDescription() - Method in class gov.nih.nlm.mms.DefaultSubset
Returns the description of the DefaultSubset.
getDescription() - Method in class gov.nih.nlm.mms.SaveConfigAction.PropertiesFileFilter
Returns the .properties file filter description.
getDescription() - Method in class gov.nih.nlm.umls.meta.AdditionalRelationshipLabel
Returns the description
getDescription() - Method in class gov.nih.nlm.umls.meta.AttributeName
Returns the description
getDescription() - Method in class gov.nih.nlm.umls.meta.CoocurrenceType
Returns the description
getDescription() - Method in interface gov.nih.nlm.umls.meta.ExpandedForm
Return the description.
getDescription() - Method in class gov.nih.nlm.umls.meta.Language
Returns the description
getDescription() - Method in class gov.nih.nlm.umls.meta.RelationshipLabel
Returns the description
getDescription() - Method in class gov.nih.nlm.umls.meta.SemanticTypeGroup
Returns the description
getDescription() - Method in class gov.nih.nlm.umls.meta.SourceIdentifierType
Returns the description
getDescription() - Method in class gov.nih.nlm.umls.meta.StringType
Returns the description
getDescription() - Method in class gov.nih.nlm.umls.meta.Suppressible
Returns the description
getDescription() - Method in class gov.nih.nlm.umls.meta.TermStatus
Returns the description
getDescription() - Method in class gov.nih.nlm.umls.meta.TermType
Returns the description
getDescription() - Method in class gov.nih.nlm.umls.meta.TermTypeGroup
Returns the description
getDescription() - Method in class gov.nih.nlm.util.ColumnStatistics
Returns the column description.
getDescription() - Method in class gov.nih.nlm.util.FileStatistics
Returns a description of the file.
getDir() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns the directionality value (DIR).
getDir() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the directionality value (DIR).
getDirectoryHistory() - Method in class gov.nih.nlm.mms.browser.BrowserState
Returns the last five opened directories.
getDirectoryToConceptListMap() - Method in class gov.nih.nlm.mms.browser.BrowserState
Returns the map of directories to their ConceptLists.
getDocument() - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Returns the current Document.
getEditorPane() - Method in class gov.nih.nlm.swing.HtmlViewer
Returns the JEditorPane which holds HTML.
getEx() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns a semi-colon (;) separated list of Metathesaurus strings (EX) which are examples of this semantic type.
getEx() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns a semi-colon (;) separated list of Metathesaurus strings (EX) which are examples of this semantic type.
getEx() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Shorthand for STYMetaDescriptionImpl.getExamplesAsString().
getExamples() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns a String array of of Metathesaurus strings (EX) which are examples of this semantic type.
getExamples() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns a String array of of Metathesaurus strings (EX) which are examples of this semantic type.
getExamples() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Returns a String array of of Metathesaurus strings (EX) which are examples of this semantic type.
getExamplesAsList() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns a List array of of Metathesaurus strings (EX) which are examples of this semantic type.
getExamplesAsList() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns a List array of of Metathesaurus strings (EX) which are examples of this semantic type.
getExamplesAsList() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Returns a List array of of Metathesaurus strings (EX) which are examples of this semantic type.
getExamplesAsString() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns a semi-colon (;) separated list of Metathesaurus strings (EX) which are examples of this semantic type.
getExamplesAsString() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns a semi-colon (;) separated list of Metathesaurus strings (EX) which are examples of this semantic type.
getExamplesAsString() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Returns a semi-colon (;) separated list of Metathesaurus strings (EX) which are examples of this semantic type.
getExplain() - Method in interface gov.nih.nlm.umls.meta.MetaDescription
Returns the explain field.
getExplain() - Method in class gov.nih.nlm.umls.meta.impl.MetaDescriptionImpl
Returns the explain field.
getExpr() - Method in interface gov.nih.nlm.umls.meta.MapObject
Returns the expression (FROMEXPR or TOEXPR).
getExpr() - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Returns the expression (FROMEXPR or TOEXPR).
getExpression() - Method in interface gov.nih.nlm.umls.meta.MapObject
Returns the expression (FROMEXPR or TOEXPR).
getExpression() - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Returns the expression (FROMEXPR or TOEXPR).
getExtension(File) - Static method in class gov.nih.nlm.mms.MMSToolkit
Returns the extension portion of the file's name.
getExternalName() - Method in interface gov.nih.nlm.umls.meta.Locator
Returns the actual name that occurs in the information source (SNA) if not otherwise present in the Metathesaurus.
getExternalName() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Returns the actual name that occurs in the information source (SNA) if not otherwise present in the Metathesaurus.
getFileName() - Method in class gov.nih.nlm.util.ColumnStatistics
Returns the file name.
getFileName() - Method in class gov.nih.nlm.util.FileStatistics
Returns the file name.
getFilePosition(String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
DO NOT USE.
getFileStatistics(String) - Method in interface gov.nih.nlm.umls.io.FileStatisticsConfiguration
Returns the FileStatistics object for the specified file name.
getFileStatistics(String) - Method in class gov.nih.nlm.umls.io.InputStreamFileStatisticsConfiguration
Returns a FileStatistics object containing ColumnStatistics objects describing the specified file.
getFileStatisticsConfiguration() - Method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
 
getFileTextFromFileStatistics(FileStatistics) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Returns a MRFILES line.
getFileTextFromFileStatistics(FileStatistics) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Returns the MRFILES.RRF line for the specified FileStatistics.
getFindDialog() - Static method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
 
getFinderHandler() - Method in interface gov.nih.nlm.mms.browser.ConceptView
Indicates the FinderHandler that will execute the find operation for this ConceptView
getFinderHandler() - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Indicates the FinderHandler that will execute the find operation for this ConceptView
getFinderHandler() - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Indicates the FinderHandler that will execute the find operation for this ConceptView
getFinderManager() - Method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
Returns a reference to the FinderManager.
getFinders() - Method in class gov.nih.nlm.mms.browser.FinderManager
Returns the Set of Finders.
getFontFamily() - Method in class gov.nih.nlm.mms.browser.BrowserState
Returns the current font family.
getFontPointSize() - Method in class gov.nih.nlm.mms.browser.BrowserState
Returns the current font point size.
getForwardStack() - Method in class gov.nih.nlm.mms.browser.ConceptList
Returns a Stack of Concepts populated only with cuis.
getFr() - Method in interface gov.nih.nlm.umls.meta.Locator
Returns the frequency (FR).
getFr() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.getFrequency().
getFrequency() - Method in interface gov.nih.nlm.umls.meta.Locator
Returns the frequency (FR).
getFrequency() - Method in interface gov.nih.nlm.umls.meta.QualifierFrequency
Returns the frequency.
getFrequency() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Returns the frequency (FR).
getFrequency() - Method in class gov.nih.nlm.umls.meta.impl.QualifierFrequencyImpl
Returns the frequency.
getFrequencyMeaning() - Method in interface gov.nih.nlm.umls.meta.Locator
Returns the meaning of the frequency (UN), if the frequency is set.
getFrequencyMeaning() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Returns the meaning of the frequency (UN), if the frequency is set.
getFrom() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the mapped from MapObject.
getFrom() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the mapped from MapObject.
getGUIConfigurableForValidationFailure() - Method in interface gov.nih.nlm.mms.GUIConfigurable
Returns the GUIConfigurable whose tab should next be displayed to allow the user to correct an error or warning.
getGUIConfigurableForValidationFailure() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Returns the GUIConfigurable whose tab should next be displayed to allow the user to correct an error or warning.
getGUIConfigurableForValidationFailure() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Returns the GUIConfigurable whose tab should next be displayed to allow the user to correct an error or warning.
getGUIConfigurableForValidationFailure() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Returns the GUIConfigurable whose tab should next be displayed to allow the user to correct an error or warning.
getGUIConfigurableForValidationFailure() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Returns the GUIConfigurable whose tab should next be displayed to allow the user to correct an error or warning.
getGUIConfigurableForValidationFailure() - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Returns the GUIConfigurable whose tab should next be displayed to allow the user to correct an error or warning.
getGUIConfigurableForValidationFailure() - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Returns the GUIConfigurable whose tab should next be displayed to allow the user to correct an error or warning.
getGUIConfigurableForValidationFailure() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Returns the GUIConfigurable whose tab should next be displayed to allow the user to correct an error or warning.
getGUIConfigurableForValidationFailure() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Returns the GUIConfigurable whose tab should next be displayed to allow the user to correct an error or warning.
getGui() - Static method in class gov.nih.nlm.mms.MMSToolkit
Returns the MetamorphoSysGUI.
getHcd() - Method in interface gov.nih.nlm.umls.meta.Context
Returns the hierarchical code (HCD).
getHcd() - Method in interface gov.nih.nlm.umls.meta.ContextMember
Returns the hierarchical code (HCD).
getHcd() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Shorthand for ContextImpl.getHierarchicalCode().
getHcd() - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Shorthand for ContextMemberImpl.getHierarchicalCode().
getHelpPanel() - Method in interface gov.nih.nlm.mms.GUIConfigurable
Returns a JPanel that will be displayed when the user selects the corresponding menu item from the Help menu and will provide the user with detailed instructions on the tab's use.
getHelpPanel() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Returns a JPanel that will be displayed when the user selects the corresponding menu item from the Help menu and will provide the user with detailed instructions on the tab's use.
getHelpPanel() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Returns a JPanel that will be displayed when the user selects the corresponding menu item from the Help menu and will provide the user with detailed instructions on the tab's use.
getHelpPanel() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Provides a JPanel that will be displayed when the user selects the corresponding menu item from the Help menu and will provide the user with detailed instructions on the tab's use.
getHelpPanel() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Returns a JPanel that will be displayed when the user selects the corresponding menu item from the Help menu and will provide the user with detailed instructions on the tab's use.
getHelpPanel() - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Returns a JPanel that will be displayed when the user selects the corresponding menu item from the Help menu and will provide the user with detailed instructions on the tab's use.
getHelpPanel() - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Returns a JPanel that will be displayed when the user selects the corresponding menu item from the Help menu and will provide the user with detailed instructions on the tab's use.
getHelpPanel() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Method provides a JPanel that will be added to the main GUI help menu to allow the user to consult a help window that is particular to this filter.
getHelpPanel() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
Method provides a JPanel that will be added to the main GUI help menu to allow the user to consult a help window that is particular to this filter.
getHelpPanel() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Method provides a JPanel that will be called from the help menu to allow the user to reference a help window that is particular to this filter.
getHelpPanel() - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Method provides a JPanel that will be added to the main GUI help menu to allow the user to consult a help window that is particular to this filter.
getHelpPanel() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Returns a JPanel that will be added to the main GUI help menu to allow the user to consult a help window that is particular to this filter.
getHelpPanel() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
Method provides a JPanel that will be added to the main GUI help menu to allow the user to consult a help window that is particular to this filter.
getHelpPanel() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Returns a help JPanel.
getHelpPanel() - Method in class gov.nih.nlm.mms.filters.RxNormFilter
Method provides a JPanel that will be called from the help menu to allow the user to reference a help window that is particular to this filter.
getHelpPanel() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Returns the help JPanel.
getHelpPanel() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method provides a JPanel that will be added to the main GUI help menu to allow the user to consult a help window that is particular to this filter.
getHelpPanel() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Returns a help JPanel.
getHierarchicalCode() - Method in interface gov.nih.nlm.umls.meta.Context
Returns the hierarchical code (HCD).
getHierarchicalCode() - Method in interface gov.nih.nlm.umls.meta.ContextMember
Returns the hierarchical code (HCD).
getHierarchicalCode() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns the hierarchical code (HCD).
getHierarchicalCode() - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Returns the hierarchical code (HCD).
getHierarchicalSemanticType(String) - Static method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns the HierarchicalSemanticType for the specified semantic type name.
getHierarchicalSemanticTypes() - Static method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Return all HierarchicalSemanticTypes.
getHierarchicalSemanticTypesAsList() - Static method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Return all HierarchicalSemanticTypes.
getHomeDirectory() - Method in class gov.nih.nlm.mms.ApplicationConfiguration
Returns the path to the home directory.
getIconHeight() - Method in class gov.nih.nlm.swing.BevelArrowIcon
Returns the height of the icon.
getIconHeight() - Method in class gov.nih.nlm.swing.BlankIcon
Returns the icon height.
getIconWidth() - Method in class gov.nih.nlm.swing.BevelArrowIcon
Returns the width of the icon.
getIconWidth() - Method in class gov.nih.nlm.swing.BlankIcon
Returns the icon width.
getId() - Method in class gov.nih.nlm.mms.DefaultSubset
Returns the identifier of the DefaultSubset.
getId() - Method in interface gov.nih.nlm.umls.meta.MapObject
Returns the unique identifier (FROMID or TOID).
getId() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the unique identifier (MAPID).
getId() - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Returns the unique identifier (FROMID or TOID).
getId() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the unique identifier (MAPID).
getIdentifier() - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Returns the unique identifier (UI).
getIdentifier() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns the unique identifier (UI).
getIdentifier() - Method in interface gov.nih.nlm.umls.meta.MapObject
Returns the unique identifier (FROMID or TOID).
getIdentifier() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the unique identifier (MAPID).
getIdentifier() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns the unique identifier (UI).
getIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Returns the unique identifier (UI).
getIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Returns the unique identifier (FROMID or TOID).
getIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the unique identifier (MAPID).
getIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Returns the unique identifier (UI).
getImeta() - Method in class gov.nih.nlm.umls.meta.Source
Returns the version of the Metathesaurus in which this source first appeared (IMETA).
getImeta() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the version of the Metathesaurus in which this source first appeared (IMETA).
getImeta() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getInsertMetaVersion()
getIncludedSources() - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI
Returns List of Sources that have been selected to be included in MRCXT.RRF.
getIndexProgress() - Method in interface gov.nih.nlm.mms.ConceptInputStream
Return an int between 0 and 100 indicating how far along the input stream is in reading IndexEntry elements.
getIndexProgress() - Method in interface gov.nih.nlm.mms.MetamorphoSysInputStream
Return an int between 0 and 100 indicating how far along the input stream is in reading IndexEntry elements.
getIndexProgress() - Method in interface gov.nih.nlm.umls.io.MetathesaurusInputStream
Returns the percentage of the IndexEntry objects that have been processed.
getIndexProgress() - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
Returns the percentage of the index file lines that have been processed.
getIndexProgress() - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
Returns the percentage of the index file lines that have been processed.
getIndexWords(String[]) - Static method in class gov.nih.nlm.util.SystemToolkit
Lowercases words and returns the list sorted and uniqed.
getInputStream() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns the ConceptInputStream selected by the user.
getInsertMetaVersion() - Method in class gov.nih.nlm.umls.meta.Source
Returns the version of the Metathesaurus in which this source first appeared (IMETA).
getInsertMetaVersion() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the version of the Metathesaurus in which this source first appeared (IMETA).
getInsertMetaVersion() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the version of the Metathesaurus in which this source first appeared (IMETA).
getInstallConfiguration() - Static method in class gov.nih.nlm.mms.InstallConfiguration
Returns the singleton reference to the InstallConfiguration.
getInterfaceImplementations(String) - Static method in class gov.nih.nlm.mms.MMSToolkit
Scans all .jar files in the CLASSPATH and returns all fully qualified class names that implement the specified interface.
getIspref() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the flag indicating whether or not this Atom is preferred (ISPREF).
getIspref() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the flag indicating whether or not this Atom is preferred (ISPREF).
getKey() - Method in interface gov.nih.nlm.umls.meta.MetaDescription
Returns the key.
getKey() - Method in class gov.nih.nlm.umls.meta.impl.MetaDescriptionImpl
Returns the key.
getKey(int) - Method in class gov.nih.nlm.util.OrderedHashMap
Returns the Object key for a specified index.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.Attribute
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.AttributeContext
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.AttributeValue
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.Context
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.ContextGroup
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.ContextMember
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.CoocurrenceGroup
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.Definition
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.Locator
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.MapObject
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.MetaDescription
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.QualifierFrequency
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.SemanticType
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.StringAttribute
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.StringContext
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.StringInfo
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.Term
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in interface gov.nih.nlm.umls.meta.TermAttribute
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.AtomAttributeImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.AtomCoocurrenceImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.AtomRelationshipImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.MetaDescriptionImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.QualifierFrequencyImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipAttributeImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getKeyFields() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Returns a String key which can be used by equals, compareTo, and hashCode methods.
getLabel() - Method in interface gov.nih.nlm.umls.meta.ContextMember
Returns the label for this ContextMember (CXL).
getLabel() - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Returns the label for this ContextMember (CXL).
getLanguage() - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Returns the Language of the index that will be searched.
getLanguage() - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Returns the language of the index file that should be searched.
getLanguage() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the Language (LAT).
getLanguage() - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Returns a String representation of the language.
getLanguage(String) - Static method in class gov.nih.nlm.umls.meta.Language
Returns the Language for the specified abbreviation.
getLanguage() - Method in class gov.nih.nlm.umls.meta.Source
Returns the Language (LAT).
getLanguage() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the Language (LAT).
getLanguage() - Method in interface gov.nih.nlm.umls.meta.Term
Returns the Language (LAT).
getLanguage() - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Returns a String representation of the language.
getLanguage() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the Language (LAT).
getLanguage() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the Language (LAT).
getLanguage() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Returns the Language (LAT).
getLanguages() - Static method in class gov.nih.nlm.umls.meta.Language
Return all Languages.
getLanguagesAsList() - Static method in class gov.nih.nlm.umls.meta.Language
Returns all Languages as a List.
getLanguagesToRemove() - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
This method returns the List containing all languages to be excluded.
getLastDragIndex() - Method in class gov.nih.nlm.swing.XTabbedPane
Get XTabbedPane index of pane dragged.
getLastReleaseVersion() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Returns the last release version in which the CUI1 was valid (VER).
getLastReleaseVersion() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Returns the last release version in which the CUI1 was valid (VER).
getLastTabIndex() - Method in class gov.nih.nlm.swing.XTabbedPane
Get XTabbedPane index of where pane was dropped.
getLat() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the Language (LAT).
getLat() - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Returns a String representation of the language.
getLat() - Method in class gov.nih.nlm.umls.meta.Source
Returns the Language (LAT).
getLat() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the Language (LAT).
getLat() - Method in interface gov.nih.nlm.umls.meta.Term
Returns the Language (LAT).
getLat() - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Returns a String representation of the language.
getLat() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.getLanguage().
getLat() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getLanguage().
getLat() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Shorthand for TermImpl.getLanguage().
getLexiconFile() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns the File that contains the lexicon data.
getLicenseContact() - Method in class gov.nih.nlm.umls.meta.Source
Returns the license contact information (SLC).
getLicenseContact() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the license contact information (SLC).
getLicenseContact() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the license contact information (SLC).
getLineCount() - Method in class gov.nih.nlm.util.FileStatistics
Returns the line count.
getLineCounts() - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Reads through MRFILES to determine the size of MRCON.
getLineCounts() - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
Reads through MRFILES to determine the size of the index files.
getLineCounts() - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Reads through MRFILES.RRF to determine the size of MRCONSO.RRF.
getLineCounts() - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
Reads through MRFILES.RRF to determine the size of the index files.
getLoadWarningsReport() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns a report indicating all warnings that occurred while loading the user configuration file.
getLocators(Concept, String) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Returns Locators from the MRLO file with the given cui and adds them to the current Concept.
getLocators() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the Locators.
getLocators() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Locators.
getLocators() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Returns the Locators.
getLocators() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Locators.
getLocators() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the Locators.
getLocators() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Locators.
getLocatorsAsList() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the Locators as a List.
getLocatorsAsList() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Locators as a List.
getLocatorsAsList() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Returns the Locators as a List.
getLocatorsAsList() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Locators as a List.
getLocatorsAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the Locators as a List.
getLocatorsAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Locators as a List.
getLog() - Method in class gov.nih.nlm.mms.MetamorphoSys
Returns the BufferedWriter log.
getLowercaseWord() - Method in class gov.nih.nlm.umls.meta.impl.LowercaseWordIndexEntryImpl
Returns the String that is being indexed.
getLui() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the term identifier (LUI).
getLui() - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Returns a String representation of the LUI.
getLui() - Method in interface gov.nih.nlm.umls.meta.Term
Returns the term identifier (LUI).
getLui() - Method in interface gov.nih.nlm.umls.meta.TermAttribute
Returns the term identifier (LUI).
getLui() - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Returns a String representation of the LUI.
getLui() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.getTermIdentifier().
getLui() - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Shorthand for TermAttributeImpl.getTermIdentifier().
getLui() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Shorthand for TermImpl.getTermIdentifier().
getLvgConfigFile() - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
 
getLvgVersion() - Static method in class gov.nih.nlm.mms.MMSToolkit
Returns the lvg version from release.dat.
getMap(Object) - Method in class gov.nih.nlm.util.MultiMap
Returns the Map for the key.
getMapReason() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the reason for this AtomMapping (MAPREASON).
getMapReason() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Returns the reason for this ConceptMapping (MAPREASON).
getMapReason() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns the reason for this AtomMapping (MAPREASON).
getMapReason() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Returns the reason for this ConceptMapping (MAPREASON).
getMapin() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the "in current subset" value (MAPIN).
getMapin() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Returns the "in current subset" value (MAPIN).
getMapin() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns the "in current subset" value (MAPIN).
getMapin() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Returns the "in current subset" value (MAPIN).
getMappings(Concept, String) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Returns Mappings from the MRATX file with the given cui and adds them to the current Concept.
getMappings(Concept, String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Gets Mappings from the MRMAP.RRF file with the given cui and adds them to the current Concept.
getMappings() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Mappings.
getMappings() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Mappings.
getMappings() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Mappings.
getMappingsAsList() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Mappings as a List.
getMappingsAsList() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Mappings as a List.
getMappingsAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Mappings as a List.
getMaxContexts() - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI
Indicates the maximum number of contexts that will be written to MRCXT.RRF for any given atom/sab.
getMaxLength() - Method in class gov.nih.nlm.util.ColumnStatistics
Returns the maximum length of the column.
getMend() - Method in class gov.nih.nlm.umls.meta.Source
Returns the date when this source is no longer valid in the Metathesaurus (MEND).
getMend() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the date when this source is no longer valid in the Metathesaurus (MEND).
getMend() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getValidEndDate().
getMetaDestinationDirectory() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns the directory into which the Metathesaurus subset will be made.
getMetadata() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns MetaDescriptions in the current subset.
getMetadata() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns MetaDescriptions in the current subset.
getMetadataAsList() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns MetaDescription in the current subset as a List.
getMetadataAsList() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns MetaDescription in the current subset as a List.
getMetamorphoSysConfigurationDirectory() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns the File for the MetamorphoSys "config" directory to use.
getMetamorphoSysFile() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns the File that contains the MetamorphoSys application.
getMetamorphoSysInputStream() - Method in class gov.nih.nlm.mms.InstallConfiguration
Gets the MetamorphoSysInputStream.
getMetathesaurusFiles() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns the File that contains the Metathesaurus data.
getMinLength() - Method in class gov.nih.nlm.util.ColumnStatistics
Returns the minimum length of the column.
getModel() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
 
getModel() - Method in class gov.nih.nlm.swing.TableMap
Returns the model underlying the map.
getMstart() - Method in class gov.nih.nlm.umls.meta.Source
Returns the date when this source becomes valid in the Metathesaurus (MSTART).
getMstart() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the date when this source becomes valid in the Metathesaurus (MSTART).
getMstart() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getValidStartDate().
getMultiLineUserInput(String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Asks the user a question that involves a potentially multi-line answer.
getMultiLineUserInput(Component, String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Asks the user a question that involves a potentially multi-line answer.
getNH() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns the non human flag value (NH).
getNH() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns the non human flag value (NH).
getNH() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Returns the non human flag value (NH).
getName() - Method in interface gov.nih.nlm.mms.ConceptInputStream
Returns a descriptive, yet short, name of the input stream for display purposes.
getName() - Method in interface gov.nih.nlm.mms.ConceptOutputStream
Returns a descriptive, yet short, name of the output stream for display purposes.
getName() - Method in class gov.nih.nlm.mms.DefaultSubset
Returns the name of the DefaultSubset.
getName() - Method in interface gov.nih.nlm.mms.GUIConfigurable
Returns the name.
getName() - Method in class gov.nih.nlm.mms.NLMFileMetamorphoSysInputStream
Returns the short name for display purposes.
getName() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Returns the short name for display purposes.
getName() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Returns the short name for display purposes.
getName() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Returns the short name for display purposes.
getName() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Returns the short name for display purposes.
getName() - Method in class gov.nih.nlm.mms.browser.CuiSearchFinder
Returns the name.
getName() - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Returns the name.
getName() - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Returns the name.
getName() - Method in class gov.nih.nlm.mms.browser.TreeBrowserFinder
Returns the name.
getName() - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Returns the name.
getName() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
Returns the name.
getName() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Returns the name of the Filter.
getName() - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Returns the name.
getName() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Returns the name.
getName() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
Returns the name.
getName() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Returns the filter name.
getName() - Method in class gov.nih.nlm.mms.filters.RxNormFilter
Returns the name of the Filter.
getName() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Returns the name.
getName() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Returns the name.
getName() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Returns the filter name.
getName() - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the name (STR).
getName() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns the name (STY).
getName() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns the name (STY).
getName() - Method in interface gov.nih.nlm.umls.meta.StringInfo
Sets the name (STR).
getName() - Method in interface gov.nih.nlm.umls.meta.Term
Sets the name (STR).
getName() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the name (STR).
getName() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Returns the name (STY).
getName() - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Sets the name (STR).
getName() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Sets the name (STR).
getNormalizedString() - Method in class gov.nih.nlm.umls.meta.impl.NormalizedStringIndexEntryImpl
Returns the String that is being indexed.
getNormalizedWord() - Method in class gov.nih.nlm.umls.meta.impl.NormalizedWordIndexEntryImpl
Returns the String that is being indexed.
getNote() - Method in class gov.nih.nlm.util.ProgressEvent
Returns the note.
getObject() - Method in class gov.nih.nlm.util.ObjectXMLSerializer
Returns the top object on the object Stack.
getOfficialName() - Method in class gov.nih.nlm.umls.meta.Source
Returns the source official name (SON).
getOfficialName() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the source official name (SON).
getOfficialName() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the source official name (SON).
getOldStyleFilters() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns the List of old style filters.
getOutputStream() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns the ConceptOutputStream selected by the user.
getOverrideConfigurationFiles() - Method in class gov.nih.nlm.mms.InstallConfiguration
Indicates whether or not settings from this object should override the configuration files
getPackage() - Static method in class gov.nih.nlm.mms.Version
Returns the package current package name.
getPackage() - Static method in class gov.nih.nlm.mms.browser.Version
Returns the package current package name.
getPackage() - Static method in class gov.nih.nlm.mms.cxt.Version
Returns the package current package name.
getPackage() - Static method in class gov.nih.nlm.mms.filters.Version
Returns the package current package name.
getPackage() - Static method in class gov.nih.nlm.swing.Version
Returns the package current package name.
getPackage() - Static method in class gov.nih.nlm.umls.Version
Returns the package current package name.
getPackage() - Static method in class gov.nih.nlm.umls.io.Version
Returns the package current package name.
getPackage() - Static method in class gov.nih.nlm.umls.meta.Version
Returns the package current package name.
getPackage() - Static method in class gov.nih.nlm.umls.meta.impl.Version
Returns the package current package name.
getPackage() - Static method in class gov.nih.nlm.util.Version
Returns the package current package name.
getPagesPerSheet() - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Returns the number of pages per sheet.
getPagesPerSheet() - Method in class gov.nih.nlm.util.JComponentPrintHandler
Returns the number of pages per sheet.
getPagesPrinted() - Method in class gov.nih.nlm.util.OnePagePrintable
Returns the number of pages printed.
getPagesPrinted() - Method in class gov.nih.nlm.util.TwoPagePrintable
Returns the number of pages printed.
getPanel() - Method in interface gov.nih.nlm.mms.GUIConfigurable
Returns a JPanel containing configuration options.
getPanel() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Returns GUI panel that will be displayed on one of the tabs on the main GUI window.
getPanel() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Returns the GUI panel that will be displayed on one of the tabs on the main GUI window.
getPanel() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Returns GUI panel that will be displayed on one of the tabs on the main GUI window.
getPanel() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Returns the GUI panel that will be displayed on one of the tabs on the main GUI window.
getPanel() - Method in class gov.nih.nlm.mms.browser.CuiSearchFinder
Returns a JPanel containing configuration options.
getPanel() - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Returns a JPanel containing the concept report.
getPanel() - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Returns a JPanel containing the concept report.
getPanel() - Method in class gov.nih.nlm.mms.browser.FinderManager
Returns a JPanel with a JTabbedPane displaying all of the FinderManager's Finders.
getPanel() - Method in class gov.nih.nlm.mms.browser.ReportsManager
Returns a JPanel with a JTabbedPane displaying all of the ReportsManager's ConceptViews.
getPanel() - Method in class gov.nih.nlm.mms.browser.TreeBrowserFinder
Returns a JPanel containing a JTree that enables navigation through the context hierarchy.
getPanel() - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Returns a JPanel containing configuration options.
getPanel() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
Method provides the GUI panel that will display the filter's screen as one of the tabs on the main GUI window.
getPanel() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Returns a configuration panel.
getPanel() - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Method provides the GUI panel that will display the filter's screen as one of the tabs on the main GUI window.
getPanel() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Provides the GUI panel that will display the filter's screen as one of the tabs on the main GUI window.
getPanel() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
Method provides the GUI panel that will display the filter's screen as one of the tabs on the main GUI window.
getPanel() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Returns the GUI panel that will display the filter's screen as one of the tabs on the main GUI window.
getPanel() - Method in class gov.nih.nlm.mms.filters.RxNormFilter
Returns an empty configuration panel.
getPanel() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Returns the GUI panel that will display the filter's screen as one of the tabs on the main GUI window.
getPanel() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method provides the GUI panel that will display the filter's screen as one of the tabs on the main GUI window.
getPanel() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Returns the GUI panel that will display the filter's screen as one of the tabs on the main GUI window.
getPanelForHTML(URL) - Static method in class gov.nih.nlm.swing.SwingToolkit
Returns a JPanel displaying the contents of the specified url URL.
getParentAtomIdentifier() - Method in interface gov.nih.nlm.umls.meta.Context
Returns the parent atom identifier (PAUI).
getParentAtomIdentifier() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns the parent atom identifier (PAUI).
getParentAtomIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns the parent atom identifier (PAUI).
getParentAtomIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns the parent atom identifier (PAUI).
getPassword() - Method in class gov.nih.nlm.swing.PasswordDialog
Returns the password.
getPathToRoot() - Method in interface gov.nih.nlm.umls.meta.Context
Returns the path to the root (PTR) as a String[] of AUI values.
getPathToRoot() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns the path to the root (PTR) as a String[] of AUI values.
getPathToRoot() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns the path to the root (PTR) as a String[] of AUI values.
getPathToRoot() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns the path to the root (PTR) as a String[] of AUI values.
getPathToRootAsList() - Method in interface gov.nih.nlm.umls.meta.Context
Returns the path to the root (PTR) as a List of AUI values.
getPathToRootAsList() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns the path to the root (PTR) as a List of AUI values.
getPathToRootAsList() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns the path to the root (PTR) as a List of AUI values.
getPathToRootAsList() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns the path to the root (PTR) as a List of AUI values.
getPathToRootAsString() - Method in interface gov.nih.nlm.umls.meta.Context
Returns the path to the root (PTR) as a "." separated list of AUI values.
getPathToRootAsString() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns the path to the root (PTR) as a "." separated list of AUI values.
getPathToRootAsString() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns the path to the root (PTR) as a "." separated list of AUI values.
getPathToRootAsString() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns the path to the root (PTR) as a "." separated list of AUI values.
getPaui() - Method in interface gov.nih.nlm.umls.meta.Context
Returns the parent atom identifier (PAUI).
getPaui() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns the parent atom identifier (PAUI).
getPaui() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Shorthand for ContextImpl.getParentAtomIdentifier().
getPaui() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Shorthand for SourceContextImpl.getParentAtomIdentifier().
getPercent() - Method in class gov.nih.nlm.util.ProgressEvent
Returns the percentage completed.
getPrecedence() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
This method returns the ArrayList ranking the SourceTermTypes according to precedence.
getPrecedenceSubset() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Gets the subset of rows from the precedence data that will not be excluded based on the exclusions chosen on the Sources to Exclude tab.
getPreferredAtom(Atom[], List) - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Returns the preferred atom's string from amongst the given Atom[].
getPreferredAtom(Atom[], List) - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Returns the preferred atom's string from amongst the given Atom[].
getPreferredAtom() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the preferred atom of the concept.
getPreferredAtom(Comparator) - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the preferred atom of the concept.
getPreferredAtom() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the preferred atom of the concept.
getPreferredAtom(Comparator) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the preferred atom of the concept.
getPreferredAtom() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the preferred atom of the concept.
getPreferredAtom(Comparator) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the preferred atom of the concept.
getPreferredName(Concept) - Method in class gov.nih.nlm.mms.browser.WordSearchFinderOptionsGUI.StringSortOrderComparator
Looks up concept preferred name.
getPreferredName(Concept) - Method in class gov.nih.nlm.umls.meta.Concept.ByPreferredNameComparator
Looks up concept preferred name.
getPreviousTotalResultCount() - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Returns the total number of concept matches found on the previous search.
getPrimitiveValue() - Method in interface gov.nih.nlm.util.ObjectXMLSerializer.Primitive
Returns the value as a String.
getPrintable() - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Returns the Printable that handles printing.
getPrintable() - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Returns the Printable that handles printing.
getPrintable() - Method in interface gov.nih.nlm.mms.browser.FullyPrintable
Returns the Printable that handles printing.
getPrinterName() - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Returns the printer name.
getPrinterName() - Method in class gov.nih.nlm.util.JComponentPrintHandler
Returns the printer name.
getPrinterNames() - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Returns the list of available printer names.
getPrinterNames() - Method in class gov.nih.nlm.util.JComponentPrintHandler
Returns the list of available printer names.
getProgress() - Method in class gov.nih.nlm.mms.MMSProgressMonitor
Update the progress monitor with new value and repack.
getProgress() - Method in class gov.nih.nlm.util.ProgressEvent
Returns the progress.
getProgressMonitor() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns a MMSProgressMonitor.
getProperties() - Method in interface gov.nih.nlm.mms.Configurable
Returns the Properties representing the configuration choices.
getProperties() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Returns the current state of the input stream as a Properties object.
getProperties() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Returns the current state of the output stream as a Properties object.
getProperties() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Returns the current state of the input stream as a Properties object.
getProperties() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Returns the current state of the output stream as a Properties object.
getProperties(Configurable) - Method in class gov.nih.nlm.mms.UserConfiguration
Return the Properties corresponding to the specified Configurable.
getProperties() - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Returns the Properties representing the configuration choices.
getProperties() - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Returns the Properties representing the configuration choices.
getProperties(Configurable) - Method in class gov.nih.nlm.mms.browser.BrowserState
 
getProperties() - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Method returns all properties specific to the ConceptView.
getProperties() - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Method returns all properties specific to the ConceptView.
getProperties() - Method in class gov.nih.nlm.mms.browser.TreeBrowserFinder
Method returns all properties specific to the Finder.
getProperties() - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Method returns all properties specific to the Finder.
getProperties() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
Method returns all properties specific to the filter.
getProperties() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Returns a Properties object with the configuration.
getProperties() - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Method returns all properties specific to the filter.
getProperties() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Returns all Properties specific to the filter.
getProperties() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
Method returns all properties specific to the filter.
getProperties() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Returns filter state.
getProperties() - Method in class gov.nih.nlm.mms.filters.RxNormFilter
Returns a Properties object with the configuration.
getProperties() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Returns the filter state as a Properties object.
getProperties() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method returns all properties specific to the filter.
getProperties() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Returns filter state.
getProperties() - Static method in class gov.nih.nlm.swing.SwingToolkit
Returns the toolkit Properties.
getProperty(GUIConfigurable, String) - Method in class gov.nih.nlm.mms.UserConfiguration
Returns the GUIConfigurable-specific property value.
getProperty(String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Returns the property value for the specified name.
getProperty(String, String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Returns the property value for the specified name.
getPtr() - Method in interface gov.nih.nlm.umls.meta.Context
Returns the path to the root (PTR) as a "." separated list of AUI values.
getPtr() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns the path to the root (PTR) as a "." separated list of AUI values.
getPtr() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Shorthand for ContextImpl.getPathToRootAsString().
getPtr() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Shorthand for SourceContextImpl.getPathToRootAsString().
getQualifier() - Method in interface gov.nih.nlm.umls.meta.QualifierFrequency
Returns the qualifier value.
getQualifier() - Method in class gov.nih.nlm.umls.meta.impl.QualifierFrequencyImpl
Returns the qualifier value.
getQualifierAsList() - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Returns the QualifierFrequency values as a List.
getQualifierAsList() - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Returns the QualifierFrequency values as a List.
getQualifierAsList() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Returns the QualifierFrequency values as a List.
getQualifierAsList() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Returns the QualifierFrequency values as a List.
getQualifiers() - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Returns the QualifierFrequency list.
getQualifiers() - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Returns the QualifierFrequency list.
getQualifiers() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Returns the QualifierFrequency list.
getQualifiers() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Returns the QualifierFrequency list.
getRRFBrowserGUI() - Static method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
Returns the singleton reference to the RRFBrowserGUI.
getRRFBrowserGUI(Component) - Static method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
Returns the singleton reference to the RRFBrowserGUI.
getRank() - Method in interface gov.nih.nlm.umls.meta.ContextMember
Returns the rank (RNK) if the member is an ancestor.
getRank() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the rank (MAPRANK).
getRank() - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Returns the rank (RNK) if the member is an ancestor.
getRank() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the rank (RANK).
getRcui() - Method in class gov.nih.nlm.umls.meta.Source
Returns the concept identifier for the root SRC concept (VCUI).
getRcui() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the concept identifier for the root SRC concept (VCUI).
getRcui() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getRootConceptIdentifier().
getReason() - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Returns the reason for the change (REASON).
getReason() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Return the reason for this ConceptMapping.
getReason() - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Returns the reason for the change (REASON).
getReason() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Return the reason for this ConceptMapping.
getRecordIdentifier() - Method in interface gov.nih.nlm.umls.meta.Locator
Returns the record identifier (SOUI) corresponding to this Locator in the actual information source.
getRecordIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Returns the record identifier (SOUI) corresponding to this Locator in the actual information source.
getRel() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the relationship between the two AUIs (REL).
getRel() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Returns the relationship between the two CUIs (REL).
getRel() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the RelationshipLabel (REL).
getRel() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns the RelationshipLabel (REL).
getRel() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Shorthand for AtomMappingImpl.getRelationshipLabel().
getRel() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Shorthand for ConceptMappingImpl.getRelationship().
getRel() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Shorthand for MappingImpl.getRelationshipName().
getRel() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Shorthand for RelationshipImpl.getRelationshipLabel().
getRelTypesAsSet(Source) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method returns the Set containing all RelTypes that share the same Source.
getRela() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the AdditionalRelationshipLabel (RELA).
getRela() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Returns the AdditionalRelationshipLabel (RELA).
getRela() - Method in interface gov.nih.nlm.umls.meta.Context
Returns the AdditionalRelationshipLabel (RELA) from the context member to its parent.
getRela() - Method in interface gov.nih.nlm.umls.meta.ContextMember
Returns the AdditionalRelationshipLabel (RELA) from the context member to its parent.
getRela() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the AdditionalRelationshipLabel (RELA).
getRela() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns the AdditionalRelationshipLabel (RELA).
getRela() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Shorthand for AtomMappingImpl.getAdditionalRelationshipLabel()).
getRela() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Shorthand for ConceptMappingImpl.getAdditionalRelationshipLabel()).
getRela() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Shorthand for ContextImpl.getAdditionalRelationshipLabel().
getRela() - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Shorthand for ContextMemberImpl.getAdditionalRelationshipLabel().
getRela() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Shorthand for MappingImpl.getAdditionalRelationshipLabel().
getRela() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Shorthand for RelationshipImpl.getAdditionalRelationshipLabel().
getRelatedAtom() - Method in interface gov.nih.nlm.umls.meta.RelatedAtomElement
Returns the Atom to which this element is related.
getRelatedAtom() - Method in class gov.nih.nlm.umls.meta.impl.AtomCoocurrenceImpl
Returns the related atom involved.
getRelatedAtom() - Method in class gov.nih.nlm.umls.meta.impl.AtomRelationshipImpl
Returns the related atom involved.
getRelatedAtom() - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Returns the related Atom of the ancestor, sibling, or child.
getRelatedAtom() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Returns the related Atom involved.
getRelatedAtom() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the related atom involved.
getRelatedAtomIdentifier() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the atom identifier for the second atom (AUI2).
getRelatedAtomIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns the atom identifier for the second atom (AUI2).
getRelatedConcept() - Method in interface gov.nih.nlm.umls.meta.RelatedConceptElement
Returns the Concept to which this element is related.
getRelatedConcept() - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Returns the related concept of the ancestor, sibling, or child.
getRelatedConcept() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Returns the related concept involved.
getRelatedConcept() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Returns the related concept involved.
getRelatedConcept() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the related concept involved.
getRelatedConceptIdentifier() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the concept identifier for the second concept (CUI2).
getRelatedConceptIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns the concept identifier for the second atom (CUI2).
getRelatedSourceIdentifierType() - Method in interface gov.nih.nlm.umls.meta.RelatedSourceIdentifierElement
Returns the SourceIdentifierType to which this element is connected.
getRelatedSourceIdentifierType() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the SourceIdentifierType to which this element is connected.
getRelationship() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Returns the relationship between the two CUIs (REL).
getRelationship() - Method in interface gov.nih.nlm.umls.meta.RelationshipElement
Returns the Relationship to which this element is connected.
getRelationship() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Returns the relationship between the two concepts (REL).
getRelationship() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipAttributeImpl
Returns the Relationship this RelationshipAttribute is connected to.
getRelationshipGroup() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns the relationship group (RG).
getRelationshipGroup() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the relationship group (RG).
getRelationshipIdentifier() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns the Relationship unique identifier (RUI) related to this Relationship.
getRelationshipIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the Relationship unique identifier (RUI) related to this Relationship.
getRelationshipLabel() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the relationship between the two AUIs (REL).
getRelationshipLabel() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns the RelationshipLabel (REL).
getRelationshipLabel(String) - Static method in class gov.nih.nlm.umls.meta.RelationshipLabel
Returns the RelationshipLabel for the specified abbreviation.
getRelationshipLabel() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns the relationship between the two concepts (REL).
getRelationshipLabel() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the RelationshipLabel (REL).
getRelationshipLabels() - Static method in class gov.nih.nlm.umls.meta.RelationshipLabel
Return all RelationshipLabels.
getRelationshipLabelsAsList() - Static method in class gov.nih.nlm.umls.meta.RelationshipLabel
Return all RelationshipLabels as a List.
getRelationshipName() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the RelationshipLabel (REL).
getRelationshipName() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the RelationshipLabel (REL).
getRelationshipTypeAtRow(int) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method compensates for the RelTypes with sources to be excluded that are therefore not displayed in the attribute type table.
getRelationshipTypes() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method returns the List containing all RelTypes.
getRelationshipTypes(Source) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method returns the List containing all RelTypes that share the same Source.
getRelationshipTypesToRemove() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method returns the List containing all RelTypes to be excluded.
getRelationships(Concept, String) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Returns Relationships from the MRREL file with the given cui and adds them to the current Concept
getRelationships(Concept, String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Gets Relationships from the MRREL.RRF file with the given cui and adds them to the current Concept.
getRelationships() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the Relationships.
getRelationships(Restrictor) - Method in interface gov.nih.nlm.umls.meta.Atom
Returns a subset of this Atom's Relationships.
getRelationships() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Relationships.
getRelationships(Restrictor) - Method in interface gov.nih.nlm.umls.meta.Concept
Returns a subset of this Concept's Relationships.
getRelationships() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Returns the Relationships.
getRelationships(Restrictor) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Returns a subset of this Atom's Relationships.
getRelationships() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Relationships.
getRelationships(Restrictor) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns a subset of this Concept's Relationships.
getRelationships() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the Relationships.
getRelationships(Restrictor) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns a subset of this Atom's Relationships.
getRelationships() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Relationships.
getRelationships(Restrictor) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns a subset of this Concept's Relationships.
getRelationshipsAsList() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the Relationships as a List.
getRelationshipsAsList() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Relationships as a List.
getRelationshipsAsList() - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Returns the Relationships as a List.
getRelationshipsAsList() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Relationships as a List.
getRelationshipsAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the Relationships as a List.
getRelationshipsAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Relationships as a List.
getRelativeConceptIdentifier() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Returns the concept identifier for the second concept (CUI2).
getRelativeConceptIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Returns the concept identifier for the second concept (CUI2).
getRelease() - Static method in class gov.nih.nlm.mms.Version
Returns the package current release.
getRelease() - Static method in class gov.nih.nlm.mms.browser.Version
Returns the package current release.
getRelease() - Static method in class gov.nih.nlm.mms.cxt.Version
Returns the package current release.
getRelease() - Static method in class gov.nih.nlm.mms.filters.Version
Returns the package current release.
getRelease() - Static method in class gov.nih.nlm.swing.Version
Returns the package current release.
getRelease() - Static method in class gov.nih.nlm.umls.Version
Returns the package current release.
getRelease() - Static method in class gov.nih.nlm.umls.io.Version
Returns the package current release.
getRelease() - Static method in class gov.nih.nlm.umls.meta.Version
Returns the package current release.
getRelease() - Static method in class gov.nih.nlm.umls.meta.impl.Version
Returns the package current release.
getRelease() - Static method in class gov.nih.nlm.util.Version
Returns the package current release.
getReleaseDatProperties() - Static method in class gov.nih.nlm.mms.MMSToolkit
Get a copy of the release.dat Properties with the property list filled in.
getReleaseDate() - Static method in class gov.nih.nlm.mms.MMSToolkit
Returns release date of the UMLS from release.dat.
getReleaseDate() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns a String indicating the release date corresponding to the configuration file being used.
getReleaseDate() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns the release Date.
getReleaseDate() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns the release Date.
getReleaseDescription() - Static method in class gov.nih.nlm.mms.MMSToolkit
Returns release description of the UMLS from release.dat.
getReleaseDescription() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns a String indicating the release description corresponding to the configuration file being used.
getReleaseDescription() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns the release description.
getReleaseDescription() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns the release description.
getReleaseVersion() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns the release version.
getReleaseVersion() - Static method in class gov.nih.nlm.mms.MMSToolkit
Returns release version of the UMLS from release.dat.
getReleaseVersion() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns a String indicating the release version corresponding to the configuration file being used.
getReleaseVersion() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the release version in which the indicated change took place (VER).
getReleaseVersion() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns the release version.
getReleaseVersion() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns the release version in which the indicated change took place (VER).
getReleaseVersion() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns the release version.
getRemovableTermgroups() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Returns the List containing all removable SourceTermTypes.
getRemovableTermgroupsTable() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Returns the table that includes SourceTermTypes with the removable termgroups highlighted.
getRemoveMetaVersion() - Method in class gov.nih.nlm.umls.meta.Source
Returns the first version of the Metathesaurus in which this source no longer (RMETA).
getRemoveMetaVersion() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the first version of the Metathesaurus in which this source no longer (RMETA).
getRemoveMetaVersion() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the first version of the Metathesaurus in which this source no longer (RMETA).
getReportsManager() - Method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
Returns a reference to the ReportsManager.
getRes() - Method in interface gov.nih.nlm.umls.meta.MapObject
Returns the restriction (FROMRES or TORES).
getRes() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the human readable rule for use of mapping (MAPRES).
getRes() - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Returns the restriction (FROMRES or TORES).
getRes() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the human readable rule for use of mapping (MAPRES).
getResourceHelpMenu(String, String, Frame) - Static method in class gov.nih.nlm.mms.MMSToolkit
Returns a JMenuItem for a "Help" menu that opens a browser with the specified URL.
getRestriction() - Method in interface gov.nih.nlm.umls.meta.MapObject
Returns the restriction (FROMRES or TORES).
getRestriction() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the human readable rule for use of mapping (MAPRES).
getRestriction() - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Returns the restriction (FROMRES or TORES).
getRestriction() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the human readable rule for use of mapping (MAPRES).
getRestrictionLevel() - Method in class gov.nih.nlm.umls.meta.Source
Returns the restriction level (SRL).
getRestrictionLevel() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the restriction level (SRL).
getRestrictionLevel() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the restriction level (SRL).
getRg() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns the relationship group (RG).
getRg() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Shorthand for RelationshipImpl.getRelationshipGroup().
getRmeta() - Method in class gov.nih.nlm.umls.meta.Source
Returns the first version of the Metathesaurus in which this source no longer (RMETA).
getRmeta() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the first version of the Metathesaurus in which this source no longer (RMETA).
getRmeta() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getRemoveMetaVersion()
getRootConceptIdentifier() - Method in class gov.nih.nlm.umls.meta.Source
Returns the concept identifier for the root SRC concept (VCUI).
getRootConceptIdentifier() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the concept identifier for the root SRC concept (VCUI).
getRootConceptIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the concept identifier for the root SRC concept (VCUI).
getRootSourceAbbreviation() - Method in class gov.nih.nlm.umls.meta.Source
Returns the root source abbreviation (RSAB).
getRootSourceAbbreviation() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the root source abbreviation (RSAB).
getRootSourceAbbreviation() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the root source abbreviation (RSAB).
getRowCount() - Method in class gov.nih.nlm.mms.filters.PrecedenceTableModel
Returns the number of rows in the precedence table.
getRowCount() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveTableModel
Returns the number of rows in the semantic types to exclude table.
getRowCount() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveTableModel
Returns the number of rows in the sources to exclude table.
getRowCount() - Method in class gov.nih.nlm.swing.TableMap
Returns the row count from the underlying model.
getRowForAttributeType(AttType) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method compensates for the AttTypes with sources to be excluded that are therefore not displayed in the attribute type table.
getRowForRelationshipType(RelType) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method compensates for the RelTypes with sources to be excluded that are therefore not displayed in the relationship type table.
getRowForSemanticType(HierarchicalSemanticType) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveJTable
Returns the row number in the Semantic Types To Exclude table where a given HierarchicalSemanticType is located.
getRowForSemanticType(HierarchicalSemanticType) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveTableModel
Returns the row number for a given HierarchicalSemanticType in the Semantic Types To Exclude Table.
getRowForSource(Source) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveJTable
This method returns the row number in the Sources To Exclude table where a given Source is located.
getRowForSource(Source) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveTableModel
Returns the row number for a given Source in the Sources To Remove Table.
getRowForSourceTermType(SourceTermType) - Method in class gov.nih.nlm.mms.filters.PrecedenceTableModel
Gets row from the PrecedenceFilter's precedence array for the given SourceTermType.
getRowForTermgroup(SourceTermType) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Maps a SourceTermType to a row number in the table.
getRowForTermgroup(SourceTermType) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Maps a SourceTermType to a row number in the table.
getRsab() - Method in class gov.nih.nlm.umls.meta.Source
Returns the root source abbreviation (RSAB).
getRsab() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the root source abbreviation (RSAB).
getRsab() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getRootSourceAbbreviation().
getRui() - Method in interface gov.nih.nlm.umls.meta.Relationship
Shorthand for Relationship.getRelationshipIdentifier().
getRui() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Shorthand for RelationshipImpl.getRelationshipIdentifier().
getRule() - Method in interface gov.nih.nlm.umls.meta.MapObject
Returns the machine processable rule for when mapping is valid (FROMRULE or TORULE).
getRule() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the machine processable rule for when to apply mapping (MAPRULE).
getRule() - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Returns the machine processable rule for when mapping is valid (FROMRULE or TORULE).
getRule() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the machine processable rule for when to apply mapping (MAPRULE).
getSTYForString(String) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Returns the HierarchicalSemanticType with the given String representation.
getSabin() - Method in class gov.nih.nlm.umls.meta.Source
Returns the "in current subset" value (SABIN).
getSabin() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the "in current subset" value (SABIN).
getSabin() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the "in current subset" value (SABIN).
getSatui() - Method in interface gov.nih.nlm.umls.meta.AttributeElement
Returns the source asserted attribute identifier (SATUI).
getSatui() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Shorthand for AttributeImpl.getSourceAttributeIdentifier().
getSatui() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Shorthand for AttributeValueImpl.getSourceAttributeIdentifier().
getSatui() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Shorthand for DefinitionImpl.getSourceAttributeIdentifier().
getSatui() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.getSourceAttributeIdentifier().
getSaui() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the source asserted identifier (SAUI) for this Atom.
getSaui() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.getSourceAtomIdentifier().
getScaleWidthToFit() - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Indicates whether or not the document should be scaled to fit the width of the page.
getScaleWidthToFit() - Method in class gov.nih.nlm.util.JComponentPrintHandler
Indicates whether or not the document should be scaled to fit the width of the page.
getScaleWidthToFit() - Method in class gov.nih.nlm.util.OnePagePrintable
Indicates whether or not the content should be scaled to fit the width of the page.
getScaleWidthToFit() - Method in class gov.nih.nlm.util.TwoPagePrintable
Indicates whether or not to scale content to fit width of the page.
getScaledPercent(int, int) - Method in class gov.nih.nlm.util.ProgressEvent
Returns the scaled percentage.
getScalingFactor() - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Returns the scaling factor.
getScalingFactor() - Method in class gov.nih.nlm.util.JComponentPrintHandler
Returns the scaling factor.
getScalingFactor() - Method in class gov.nih.nlm.util.OnePagePrintable
Returns the scaling factor.
getScalingFactor() - Method in class gov.nih.nlm.util.TwoPagePrintable
Returns the scaling factor.
getScc() - Method in class gov.nih.nlm.umls.meta.Source
Returns the content contact information (SCC).
getScc() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the content contact information (SCC).
getScc() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getContentContact().
getScit() - Method in class gov.nih.nlm.umls.meta.Source
Returns the citation information (SCIT).
getScit() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the source citation (SCIT).
getScit() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getCitation().
getScui() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the source attributed concept identifier (SCUI).
getScui() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.getSourceConceptIdentifier().
getSdui() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the source asserted descriptor (SDUI).
getSdui() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.getSourceDescriptor().
getSearchField() - Method in class gov.nih.nlm.swing.FindDialog
 
getSearchMode() - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
 
getSelectedDefaultSubset() - Method in class gov.nih.nlm.mms.DefaultSubsetSelectionGUI
Returns the DefaultSubset selected by the user.
getSelectedDefaultSubset() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns the selected DefaultSubset.
getSelectedSources() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method returns the List containing all Sources selected.
getSelectedSourcesAsSet() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method returns the Set containing all Sources selected.
getSelectedSourcesInverse() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method returns the List of Sources that are not selected.
getSelectedSourcesInverseAsSet() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method returns the Set of Sources that are not selected.
getSelectedStringValues() - Method in class gov.nih.nlm.swing.SuperJList
Returns all selected values as Strings.
getSelfMember() - Method in interface gov.nih.nlm.umls.meta.Context
Returns the ContextMember that has the context member label (CXL) of "CCP" or self.
getSelfMember() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns the ContextMember that has the context member label (CXL) of "CCP" or self.
getSelfMembers() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns only the ContextMembers that have the context member label (CXL) of "CCP" or self.
getSelfMembers() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns only the ContextMembers that have the context member label (CXL) of "CCP" or self.
getSelfMembersAsList() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns only the ContextMembers that have the context member label (CXL) of "CCP" or self.
getSelfMembersAsList() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns only the ContextMembers that have the context member label (CXL) of "CCP" or self.
getSemanticNetworkFile() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns the File that contains the semantic network data.
getSemanticType() - Method in interface gov.nih.nlm.umls.meta.SemanticType
Returns the HierarchicalSemanticType (STY).
getSemanticType() - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Returns the HierarchicalSemanticType (STY).
getSemanticTypeAtRow(int) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveJTable
Returns the HierarchicalSemanticType object at the given row number.
getSemanticTypeAtRow(int) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveTableModel
Returns the HierarchicalSemanticType at a given row in the Semantic Types To Exclude Table.
getSemanticTypeChildren(String) - Method in class gov.nih.nlm.mms.ApplicationConfiguration
Returns the list of HierarchicalSemanticTypes that are children of a specified tree number.
getSemanticTypeChildrenAsSet(String) - Method in class gov.nih.nlm.mms.ApplicationConfiguration
Returns the set of HierarchicalSemanticTypes that are children of a specified tree number.
getSemanticTypeGroup(String) - Static method in class gov.nih.nlm.umls.meta.SemanticTypeGroup
Returns the SemanticTypeGroup for the specified abbreviation.
getSemanticTypeGroups(SemanticType) - Static method in class gov.nih.nlm.umls.meta.SemanticTypeGroup
Return all SemanticTypeGroups for which the given SemanticType is a member.
getSemanticTypeGroups() - Static method in class gov.nih.nlm.umls.meta.SemanticTypeGroup
Return all SemanticTypeGroups.
getSemanticTypeGroupsAsList(SemanticType) - Static method in class gov.nih.nlm.umls.meta.SemanticTypeGroup
Return all SemanticTypeGroups for which the given SemanticType is a member as a List.
getSemanticTypeGroupsAsList() - Static method in class gov.nih.nlm.umls.meta.SemanticTypeGroup
Return all SemanticTypeGroups as a List.
getSemanticTypes(Concept, String) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Returns SemanticTypes from the MRSTY file with the given cui and adds them to the current Concept.
getSemanticTypes(Concept, String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Gets SemanticTypes from the MRSTY.RRF file with the given cui and adds them to the current Concept.
getSemanticTypes() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the SemanticTypes.
getSemanticTypes() - Method in class gov.nih.nlm.umls.meta.SemanticTypeGroup
Return all SemanticTypes in this SemanticTypeGroup.
getSemanticTypes() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the SemanticTypes.
getSemanticTypes() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the SemanticTypes.
getSemanticTypesAsList() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the SemanticTypes as a List.
getSemanticTypesAsList() - Method in class gov.nih.nlm.umls.meta.SemanticTypeGroup
Return all SemanticTypes in this SemanticTypeGroup as a List.
getSemanticTypesAsList() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the SemanticTypes as a List.
getSemanticTypesAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the SemanticTypes as a List.
getSemanticTypesToRemove() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Returns eturns the List containing all HierarchicalSemanticTypes to be excluded.
getSf() - Method in class gov.nih.nlm.umls.meta.Source
Returns the source family (SF).
getSf() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the source family (SF).
getSf() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getSourceFamily().
getShortName() - Method in class gov.nih.nlm.umls.meta.Source
Returns the source short name (SSN).
getShortName() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the source short name (SSN).
getShortName() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the source short name (SSN).
getSiblingMembers() - Method in interface gov.nih.nlm.umls.meta.Context
Returns only the ContextMembers that have the context member label (CXL) of "SIB" or self.
getSiblingMembers() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns only the ContextMembers that have the context member label (CXL) of "SIB" or self.
getSiblingMembers() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns only the ContextMembers that have the context member label (CXL) of "SIB" or self.
getSiblingMembers() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns only the ContextMembers that have the context member label (CXL) of "SIB" or self.
getSiblingMembersAsList() - Method in interface gov.nih.nlm.umls.meta.Context
Returns only the ContextMembers that have the context member label (CXL) of "SIB" or self.
getSiblingMembersAsList() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns only the ContextMembers that have the context member label (CXL) of "SIB" or self.
getSiblingMembersAsList() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns only the ContextMembers that have the context member label (CXL) of "SIB" or self.
getSiblingMembersAsList() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns only the ContextMembers that have the context member label (CXL) of "SIB" or self.
getSid() - Method in interface gov.nih.nlm.umls.meta.MapObject
Returns the source asserted unique identifier (FROMSID or TOSID).
getSid() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the source asserted unique identifier (MAPSID).
getSid() - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Returns the source asserted unique identifier (FROMSID or TOSID).
getSid() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the source asserted unique identifier (MAPSID).
getSl() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns the source of the relationship label (SL).
getSl() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Shorthand for RelationshipImpl.getSourceOfLabel().
getSlc() - Method in class gov.nih.nlm.umls.meta.Source
Returns the license contact information (SLC).
getSlc() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the license contact information (SLC).
getSlc() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getLicenseContact().
getSna() - Method in interface gov.nih.nlm.umls.meta.Locator
Returns the actual name that occurs in the information source (SNA) if not otherwise present in the Metathesaurus.
getSna() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.getExternalName().
getSon() - Method in class gov.nih.nlm.umls.meta.Source
Returns the source official name (SON).
getSon() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the source official name (SON).
getSon() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getOfficialName().
getSoui() - Method in interface gov.nih.nlm.umls.meta.Locator
Returns the record identifier (SOUI) corresponding to this Locator in the actual information source.
getSoui() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.getRecordIdentifier().
getSource() - Method in class gov.nih.nlm.mms.Dependency
Returns the Source object being depended upon.
getSource() - Method in class gov.nih.nlm.mms.filters.AttType
This method returns the name of the source.
getSource() - Method in class gov.nih.nlm.mms.filters.RelType
This method returns the name of the Source in this RelType.
getSource(String) - Static method in class gov.nih.nlm.umls.meta.Source
Returns the Source for the specified versioned source abbreviation.
getSource() - Method in interface gov.nih.nlm.umls.meta.SourceElement
Returns the source for this SourceElement.
getSource() - Method in class gov.nih.nlm.umls.meta.SourceTermType
Returns the Source.
getSource() - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Returns the source for this AttributeContext.
getSource() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Returns the source for this Attribute.
getSource() - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Returns the source for this ComponentHistory.
getSource() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Returns the source for this Context.
getSource() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Returns the source for this CoocurrenceContext.
getSource() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Returns the source for this Coocurrence.
getSource() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Returns the source for this Definition.
getSource() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Returns the source for this Locator.
getSource() - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Returns the source for this MapObject.
getSource() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the Source.
getSource() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the source for this Atom.
getSource() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the source for this Relationship.
getSource() - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Returns the source for this StringContext.
getSource() - Method in class gov.nih.nlm.util.ProgressEvent
Returns the source.
getSourceAtRow(int) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveJTable
This method returns the Source at the given row number.
getSourceAtRow(int) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveTableModel
Returns the Source at a given row in the Sources To Remove Table.
getSourceAtomIdentifier() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the source asserted identifier (SAUI) for this Atom.
getSourceAtomIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the source asserted identifier (SAUI) for this Atom.
getSourceAttributeIdentifier() - Method in interface gov.nih.nlm.umls.meta.AttributeElement
Returns the source asserted attribute identifier (SATUI).
getSourceAttributeIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Returns the source asserted attribute identifier (SATUI).
getSourceAttributeIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Returns the source asserted attribute identifier (SATUI).
getSourceAttributeIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Returns the source asserted attribute identifier (SATUI).
getSourceAttributeIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Returns the source asserted attribute identifier (SATUI).
getSourceConceptIdentifier() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the source attributed concept identifier (SCUI).
getSourceConceptIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the source attributed concept identifier (SCUI).
getSourceContexts() - Method in interface gov.nih.nlm.umls.meta.StringContext
Returns all SourceContexts.
getSourceContexts() - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Returns all SourceContexts.
getSourceContextsAsList() - Method in interface gov.nih.nlm.umls.meta.StringContext
Returns all SourceContexts as a List.
getSourceContextsAsList() - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Returns all SourceContexts as a List.
getSourceDependencies() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method returns a List of Dependency(s).
getSourceDependenciesAsSet() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method returns a Set of Dependency(s).
getSourceDescriptor() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the source asserted descriptor (SDUI).
getSourceDescriptor() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the source asserted descriptor (SDUI).
getSourceDir() - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI
Returns the File where the MRHIER.RRF will be found and the MRCXT.RRF should be written.
getSourceFamily() - Method in class gov.nih.nlm.umls.meta.Source
Returns the source family (SF).
getSourceFamily() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the source family (SF).
getSourceFamily() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the source family (SF).
getSourceIdentifier() - Method in interface gov.nih.nlm.umls.meta.MapObject
Returns the source asserted unique identifier (FROMSID or TOSID).
getSourceIdentifier() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the source asserted unique identifier (MAPSID).
getSourceIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Returns the source asserted unique identifier (FROMSID or TOSID).
getSourceIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the source asserted unique identifier (MAPSID).
getSourceIdentifierType() - Method in interface gov.nih.nlm.umls.meta.AttributeContext
Returns the SourceIdentifierType for this AttributeContext.
getSourceIdentifierType() - Method in interface gov.nih.nlm.umls.meta.SourceIdentifierElement
Returns the SourceIdentifierType to which this element is connected.
getSourceIdentifierType(String) - Static method in class gov.nih.nlm.umls.meta.SourceIdentifierType
Returns the SourceIdentifierType for the specified abbreviation.
getSourceIdentifierType() - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Returns the SourceIdentifierType for this AttributeContext.
getSourceIdentifierType() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Returns the SourceIdentifierType to which this element is connected.
getSourceIdentifierType() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the SourceIdentifierType to which this element is connected.
getSourceIdentifierTypes() - Static method in class gov.nih.nlm.umls.meta.SourceIdentifierType
Return all SourceIdentifierTypes.
getSourceIdentifierTypesAsList() - Static method in class gov.nih.nlm.umls.meta.SourceIdentifierType
Return all SourceIdentifierTypes as a List.
getSourceMetadata() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns SourceMetaDescriptions in the current subset.
getSourceMetadata() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns SourceMetaDescriptions in the current subset.
getSourceMetadataAsList() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns SourceMetaDescription in the current subset as a List.
getSourceMetadataAsList() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns SourceMetaDescription in the current subset as a List.
getSourceOfLabel() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns the source of the relationship label (SL).
getSourceOfLabel() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the source of the relationship label (SL).
getSourcePaths() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns paths to the the installation sources.
getSourceRelationshipIdentifier() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns the source asserted relationship identifier (SRUI).
getSourceRelationshipIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the source asserted relationship identifier (SRUI).
getSourceTermType(String, String) - Method in class gov.nih.nlm.mms.ApplicationConfiguration
Returns the SourceTermType for the specified source abbreviation and term type.
getSourceTermTypePrecedence() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns all SourceTermTypes in rank order.
getSourceTermTypePrecedence() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns all SourceTermTypes in rank order.
getSourceTermTypePrecedenceAsList() - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Returns all SourceTermTypes in rank order as a List.
getSourceTermTypePrecedenceAsList() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns all SourceTermTypes in rank order as a List.
getSourceTermTypes() - Method in class gov.nih.nlm.mms.ApplicationConfiguration
Returns a List of all SourceTermType objects.
getSourceTermTypes() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
This method returns the List containing all SourceTermTypes.
getSourceTermTypes(Source) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
This method returns the List containing all SourceTermTypes that share the same Source.
getSources() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Returns the list of Sources from the default configuration.
getSources() - Static method in class gov.nih.nlm.umls.meta.Source
Returns all Sources.
getSourcesAsList() - Static method in class gov.nih.nlm.umls.meta.Source
Returns all Sources as a List.
getSourcesForFamily(String) - Static method in class gov.nih.nlm.umls.meta.Source
Returns the list of Sources for a specified source family.
getSourcesForFamilyAsSet(String) - Static method in class gov.nih.nlm.umls.meta.Source
Returns the set of Sources for a specified source family.
getSourcesToRemove() - Method in class gov.nih.nlm.mms.SourcesToRemoveEvent
Returns the List of sources to remove.
getSourcesToRemove() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method is used by the SourcesToRemoveListener to determine which sources should be removed from the other Filter's displays.
getSrl() - Method in class gov.nih.nlm.umls.meta.Source
Returns the restriction level (SRL).
getSrl() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the restriction level (SRL).
getSrl() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getRestrictionLevel().
getSrui() - Method in interface gov.nih.nlm.umls.meta.Relationship
Returns the source asserted relationship identifier (SRUI).
getSrui() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Shorthand for RelationshipImpl.getSourceRelationshipIdentifier().
getSsn() - Method in class gov.nih.nlm.umls.meta.Source
Returns the source short name (SSN).
getSsn() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the source short name (SSN).
getSsn() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getShortName().
getStn() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns the tree number (STN).
getStn() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns the tree number (STN).
getStn() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Shorthand for STYMetaDescriptionImpl.getTreeNumber().
getStr() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the name (STR).
getStr() - Method in interface gov.nih.nlm.umls.meta.StringInfo
Returns the name (STR).
getStr() - Method in interface gov.nih.nlm.umls.meta.Term
Returns the name (STR).
getStr() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.getName().
getStr() - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Shorthand for StringInfoImpl.getName().
getStr() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Shorthand for TermImpl.getName().
getStringAttribute() - Method in interface gov.nih.nlm.umls.meta.AttributeContext
Returns the StringAttribute that holds this AttributeContext.
getStringAttribute() - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Returns the StringAttribute that holds this AttributeContext.
getStringAttributes() - Method in interface gov.nih.nlm.umls.meta.TermAttribute
Returns all StringAttributes.
getStringAttributes() - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Returns all StringAttributes.
getStringAttributesAsList() - Method in interface gov.nih.nlm.umls.meta.TermAttribute
Returns all StringAttributes as a List.
getStringAttributesAsList() - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Returns all StringAttributes as a List.
getStringContext() - Method in interface gov.nih.nlm.umls.meta.SourceContext
Returns the StringContext that holds this SourceContext.
getStringContext() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Returns the StringContext that holds this SourceContext.
getStringContexts() - Method in interface gov.nih.nlm.umls.meta.ContextGroup
Returns all StringContexts.
getStringContexts() - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Returns all StringContexts.
getStringContextsAsList() - Method in interface gov.nih.nlm.umls.meta.ContextGroup
Returns all StringContexts as a List
getStringContextsAsList() - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Returns all StringContexts as a List
getStringIdentifier() - Method in interface gov.nih.nlm.umls.meta.Atom
Return the string identifier (SUI).
getStringIdentifier() - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Return the string identifier (SUI).
getStringIdentifier() - Method in interface gov.nih.nlm.umls.meta.Locator
Return the string identifier (SUI).
getStringIdentifier() - Method in interface gov.nih.nlm.umls.meta.StringInfo
Return the string identifier (SUI).
getStringIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Return the string identifier (SUI).
getStringIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Return the string identifier (SUI).
getStringIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Return the string identifier (SUI).
getStringIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Return the string identifier (SUI).
getStringInfo() - Method in interface gov.nih.nlm.umls.meta.ContextGroup
Return the StringInfo.
getStringInfo() - Method in interface gov.nih.nlm.umls.meta.StringAttribute
Returns the StringInfo.
getStringInfo() - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Return the StringInfo.
getStringInfo() - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Returns the StringInfo.
getStringType() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the StringType (STT).
getStringType() - Method in interface gov.nih.nlm.umls.meta.StringInfo
Returns the StringType (STT).
getStringType(String) - Static method in class gov.nih.nlm.umls.meta.StringType
Returns the StringType for the specified abbreviation.
getStringType() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the StringType (STT).
getStringType() - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Returns the StringType (STT).
getStringTypes() - Static method in class gov.nih.nlm.umls.meta.StringType
Returns all StringTypes.
getStringTypesAsList() - Static method in class gov.nih.nlm.umls.meta.StringType
Returns all StringTypes as a List.
getStt() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the StringType (STT).
getStt() - Method in interface gov.nih.nlm.umls.meta.StringInfo
Returns the StringType (STT).
getStt() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.getStringType().
getStt() - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Shorthand for StringInfoImpl.getStringType().
getSty() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns the name (STY).
getSty() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns the name (STY).
getSty() - Method in interface gov.nih.nlm.umls.meta.SemanticType
Returns the HierarchicalSemanticType (STY).
getSty() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Shorthand for STYMetaDescriptionImpl.getName().
getSty() - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Shorthand for SemanticTypeImpl.getSemanticType()
getSubsetDirectory() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns path to the the subset folder.
getSubsetDirectory() - Method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
Returns the currently selected subset directory.
getSubsetId() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the subset identifier (SUBSETUI).
getSubsetId() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Shorthand for MappingImpl.getSubsetIdentifier().
getSubsetIdentifier() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the subset identifier (SUBSETUI).
getSubsetIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the subset identifier (MAPSUBSETID).
getSui() - Method in interface gov.nih.nlm.umls.meta.Atom
Return the string identifier (SUI).
getSui() - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Returns a String representation of the SUI.
getSui() - Method in interface gov.nih.nlm.umls.meta.Locator
Return the string identifier (SUI).
getSui() - Method in interface gov.nih.nlm.umls.meta.StringInfo
Return the string identifier (SUI).
getSui() - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Returns a String representation of the SUI.
getSui() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.getStringIdentifier().
getSui() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.getStringIdentifier().
getSui() - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Shorthand for StringInfoImpl.getStringIdentifier().
getSuppress() - Method in class gov.nih.nlm.umls.meta.SourceTermType
Returns the suppressibility value (SUPPRESS).
getSuppress() - Method in interface gov.nih.nlm.umls.meta.SuppressibleElement
Returns the suppressibility value (SUPPRESS).
getSuppress() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Returns the suppressibility value (SUPPRESS).
getSuppress() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Returns the suppressibility value (SUPPRESS).
getSuppress() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Returns the suppressibility value (SUPPRESS).
getSuppress() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the suppressibility value (SUPPRESS).
getSuppress() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Returns the suppressibility value (SUPPRESS).
getSuppressible(String) - Static method in class gov.nih.nlm.umls.meta.Suppressible
Returns the Suppressible for the specified abbreviation.
getSuppressibleTermgroupSet() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Returns the Set containing all suppressible SourceTermTypes.
getSuppressibleTermgroups() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Returns the List containing all suppressible SourceTermTypes.
getSuppressibleTermgroupsTable() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Returns the table that includes SourceTermTypes with the suppressible termgroups highlighted.
getSuppressibles() - Static method in class gov.nih.nlm.umls.meta.Suppressible
Return all Suppressibles.
getSuppressiblesAsList() - Static method in class gov.nih.nlm.umls.meta.Suppressible
Return all Suppressibles as a List.
getSver() - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Returns the release date or version number of a source (SVER).
getSver() - Method in class gov.nih.nlm.umls.meta.Source
Returns source version (SVER).
getSver() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns source version (SVER).
getSver() - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Shorthand for ComponentHistoryImpl.getVersion().
getSver() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getVersion().
getTabDescription() - Method in interface gov.nih.nlm.mms.GUIConfigurable
Returns the description to be used in conjunction with the panel when presented to the user.
getTabDescription() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Returns the description of the screen and includes instructions on use.
getTabDescription() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Returns the description of the screen and includes instructions on use.
getTabDescription() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Returns a basic description of how to configure the input stream.
getTabDescription() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Returns a description of the screen and includes instructions on use.
getTabDescription() - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Returns the description to be used in conjunction with the panel when presented to the user.
getTabDescription() - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Returns the description to be used in conjunction with the panel when presented to the user.
getTabDescription() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
Method provides the description of the filter's screen and includes instructions on use.
getTabDescription() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Return the description to appear above the main configuration panel in the {#link MetamorphoSysGUI}.
getTabDescription() - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Method provides the description of the filter's screen and includes instructions on use.
getTabDescription() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Returns the description.
getTabDescription() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
Method provides the description of the filter's screen and includes instructions on use.
getTabDescription() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Returns the description.
getTabDescription() - Method in class gov.nih.nlm.mms.filters.RxNormFilter
Return the description to appear above the main configuration panel in the {#link MetamorphoSysGUI}.
getTabDescription() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Returns the description.
getTabDescription() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method provides the description of the filter's screen and includes instructions on use.
getTabDescription() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Returns the description.
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class gov.nih.nlm.swing.SortButtonRenderer
Returns a JButton that holds the text and BevelArrowIcon.
getTerm() - Method in interface gov.nih.nlm.umls.meta.TermElement
Returns the Term to which this element is connected.
getTerm() - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Returns the parent Term.
getTerm() - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Returns the Term.
getTermAttribute() - Method in interface gov.nih.nlm.umls.meta.StringAttribute
Returns the TermAttribute that holds this StringAttribute.
getTermAttribute() - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Returns the TermAttribute that holds this StringAttribute.
getTermAttributes() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the TermAttributes.
getTermAttributes() - Method in interface gov.nih.nlm.umls.meta.Term
Returns all TermAttributes.
getTermAttributes() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the TermAttributes.
getTermAttributes() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the TermAttributes.
getTermAttributes() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Returns all TermAttributes.
getTermAttributesAsList() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the TermAttributes as a List.
getTermAttributesAsList() - Method in interface gov.nih.nlm.umls.meta.Term
Returns all TermAttributes as a List.
getTermAttributesAsList() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the TermAttributes as a List.
getTermAttributesAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the TermAttributes as a List.
getTermAttributesAsList() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Returns all TermAttributes as a List.
getTermFrequency() - Method in class gov.nih.nlm.umls.meta.Source
Returns the frequency of terms (TFR).
getTermFrequency() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the frequency of terms (TFR).
getTermFrequency() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the frequency of terms (TFR).
getTermIdentifier() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the term identifier (LUI).
getTermIdentifier() - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Returns the term identifier (LUI).
getTermIdentifier() - Method in interface gov.nih.nlm.umls.meta.Term
Returns the term identifier (LUI).
getTermIdentifier() - Method in interface gov.nih.nlm.umls.meta.TermAttribute
Returns the term identifier (LUI).
getTermIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Returns the term identifier (LUI).
getTermIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the term identifier (LUI).
getTermIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Returns the term identifier (LUI).
getTermIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Returns the term identifier (LUI).
getTermStatus() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the TermStatus (TS).
getTermStatus() - Method in interface gov.nih.nlm.umls.meta.Term
Returns the TermStatus (TS).
getTermStatus(String) - Static method in class gov.nih.nlm.umls.meta.TermStatus
Returns the TermStatus for the specified abbreviation.
getTermStatus() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the TermStatus (TS).
getTermStatus() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Returns the TermStatus (TS).
getTermStatusAsList() - Static method in class gov.nih.nlm.umls.meta.TermStatus
Return all TermStatus values.
getTermStatuses() - Static method in class gov.nih.nlm.umls.meta.TermStatus
Return all TermStatus values.
getTermType() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the TermType (TTY).
getTermType() - Method in class gov.nih.nlm.umls.meta.SourceTermType
Returns tbe TermType.
getTermType(String) - Static method in class gov.nih.nlm.umls.meta.TermType
Returns the TermType for the specified abbreviation.
getTermType() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Returns the TermType (TTY).
getTermTypeGroup(String) - Static method in class gov.nih.nlm.umls.meta.TermTypeGroup
Returns the TermTypeGroup for the specified abbreviation.
getTermTypeGroups(TermType) - Static method in class gov.nih.nlm.umls.meta.TermTypeGroup
Return all TermTypeGroups for which the given TermType is a member.
getTermTypeGroups() - Static method in class gov.nih.nlm.umls.meta.TermTypeGroup
Return all TermTypeGroups.
getTermTypeGroupsAsList(TermType) - Static method in class gov.nih.nlm.umls.meta.TermTypeGroup
Return all TermTypeGroups for which the given TermType is a member as a List.
getTermTypeGroupsAsList() - Static method in class gov.nih.nlm.umls.meta.TermTypeGroup
Return all TermTypeGroups as a List.
getTermTypes() - Method in class gov.nih.nlm.umls.meta.Source
Returns the TermTypes.
getTermTypes() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the TermTypes.
getTermTypes() - Static method in class gov.nih.nlm.umls.meta.TermType
Return all TermTypes.
getTermTypes() - Method in class gov.nih.nlm.umls.meta.TermTypeGroup
Return all TermTypes in this TermTypeGroup.
getTermTypes() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the TermTypes.
getTermTypesAsList() - Method in class gov.nih.nlm.umls.meta.Source
Returns the TermTypes as a List.
getTermTypesAsList() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the TermTypes as a List.
getTermTypesAsList() - Static method in class gov.nih.nlm.umls.meta.TermType
Return all TermTypes as a List.
getTermTypesAsList() - Method in class gov.nih.nlm.umls.meta.TermTypeGroup
Return all TermTypes in this TermTypeGroup as a List.
getTermTypesAsList() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the TermTypes as a List.
getTermTypesAsString() - Method in class gov.nih.nlm.umls.meta.Source
Returns the term types as a comma (,) separated list of term type abbreviations (TTYL).
getTermTypesAsString() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the term types as a comma (,) separated list of term type abbreviations (TTYL).
getTermTypesAsString() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the term types as a comma (,) separated list of term type abbreviations (TTYL).
getTermVariants() - Method in interface gov.nih.nlm.umls.meta.Term
Returns all StringInfo term variants.
getTermVariants() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Returns all StringInfo term variants.
getTermVariantsAsList() - Method in interface gov.nih.nlm.umls.meta.Term
Returns all StringInfo term variants as a List.
getTermVariantsAsList() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Returns all StringInfo term variants as a List.
getTermgroupAtRow(int) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Maps a row number to the SourceTermType.
getTermgroupAtRow(int) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Maps a row number to the SourceTermType.
getTerms() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Terms.
getTerms() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Terms.
getTerms() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Terms.
getTermsAsList() - Method in interface gov.nih.nlm.umls.meta.Concept
Returns the Terms as a List.
getTermsAsList() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Returns the Terms as a List.
getTermsAsList() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Returns the Terms as a List.
getTfr() - Method in class gov.nih.nlm.umls.meta.Source
Returns the frequency of terms (TFR).
getTfr() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the frequency of terms (TFR).
getTfr() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getTermFrequency()
getThreshold() - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Returns the rank threshold.
getThreshold() - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Returns the rank threshold value for searching.
getTitle() - Method in class gov.nih.nlm.mms.EnableFilterRedoHandler
Returns the title for the redo menu item.
getTitle() - Method in class gov.nih.nlm.mms.EnableFilterUndoHandler
Returns the title for the undo menu item.
getTitle() - Method in class gov.nih.nlm.mms.GUIConfigurableRedoHandler
Returns the title for the redo menu.
getTitle() - Method in class gov.nih.nlm.mms.GUIConfigurableUndoHandler
Returns the title for the undo menu.
getTitle() - Method in class gov.nih.nlm.mms.InputStreamRedoHandler
Returns the title for the redo menu.
getTitle() - Method in class gov.nih.nlm.mms.InputStreamUndoHandler
Returns the title for the undo menu.
getTitle() - Method in class gov.nih.nlm.mms.OutputStreamRedoHandler
Returns the title for the redo menu.
getTitle() - Method in class gov.nih.nlm.mms.OutputStreamUndoHandler
Returns the title for the undo menu.
getTitle() - Method in interface gov.nih.nlm.mms.RedoHandler
Returns the title to appear on a menu item.
getTitle() - Method in interface gov.nih.nlm.mms.UndoHandler
Returns the title to appear on a menu item.
getTitle() - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Returns the title.
getTitle() - Method in class gov.nih.nlm.util.JComponentPrintHandler
Returns the title.
getTo() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the mapped to MapObject.
getTo() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the mapped to MapObject.
getToolTipText(MouseEvent) - Method in class gov.nih.nlm.swing.SuperJList
Returns the tool tip text.
getTreeNumber() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns the tree number (STN).
getTreeNumber() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns the tree number (STN).
getTreeNumber() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Returns the tree number (STN).
getTs() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the TermStatus (TS).
getTs() - Method in interface gov.nih.nlm.umls.meta.Term
Returns the TermStatus (TS).
getTs() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.getTermStatus().
getTs() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Shorthand for TermImpl.getTermStatus().
getTty() - Method in interface gov.nih.nlm.umls.meta.Atom
Returns the TermType (TTY).
getTty() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.getTermType().
getTtyl() - Method in class gov.nih.nlm.umls.meta.Source
Returns the term types as a comma (,) separated list of term type abbreviations (TTYL).
getTtyl() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the term types as a comma (,) separated list of term type abbreviations (TTYL).
getTtyl() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getTermTypesAsString().
getType() - Method in class gov.nih.nlm.mms.filters.AttType
This method returns the attribute type.
getType() - Method in class gov.nih.nlm.mms.filters.RelType
This method returns the type of the RelType.
getType() - Method in interface gov.nih.nlm.umls.meta.MapObject
Returns the type SourceIdentifierType (FROMTYPE or TOTYPE).
getType() - Method in interface gov.nih.nlm.umls.meta.Mapping
Returns the type of mapping (MAPTYPE).
getType() - Method in interface gov.nih.nlm.umls.meta.MetaDescription
Returns the type.
getType() - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Returns the type SourceIdentifierType (FROMTYPE or TOTYPE).
getType() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Returns the type of mapping (MAPTYPE).
getType() - Method in class gov.nih.nlm.umls.meta.impl.MetaDescriptionImpl
Returns the type.
getURLHelpMenu(String, String, GlassPaneListener) - Static method in class gov.nih.nlm.mms.MMSToolkit
Returns a JMenuItem for a "Help" menu that opens a browser with the specified URL.
getUi() - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Returns the unique identifier (UI).
getUi() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns the unique identifier (UI).
getUi() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns the unique identifier (UI).
getUi() - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Shorthand for ComponentHistoryImpl.getIdentifier().
getUi() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Shorthand for STYMetaDescriptionImpl.getIdentifier().
getUmlsDestinationDirectory() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns the directory into which the UMLS will be installed.
getUmlsDirectory() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns the File directory that contains the Metathesaurus data.
getUn() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns the usage note (UN).
getUn() - Method in interface gov.nih.nlm.umls.meta.Locator
Returns the meaning of the frequency (UN), if the frequency is set.
getUn() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns the usage note (UN).
getUn() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.getFrequencyMeaning().
getUn() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Shorthand for STYMetaDescriptionImpl.getUsageNote().
getUsageNote() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Returns the usage note (UN).
getUsageNote() - Method in interface gov.nih.nlm.umls.meta.STYMetaDescription
Returns the usage note (UN).
getUsageNote() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Returns the usage note (UN).
getUserConfiguration() - Method in class gov.nih.nlm.mms.MetamorphoSys
Returns the UserConfiguration.
getUserConfiguration() - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Returns the UserConfiguration.
getUserInput(String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Asks the user a question.
getUserInput(Component, String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Asks the user a question.
getUserName() - Method in class gov.nih.nlm.swing.PasswordDialog
Returns the user name.
getValidEndDate() - Method in class gov.nih.nlm.umls.meta.Source
Returns the date when this source is no longer valid in the Metathesaurus (MEND).
getValidEndDate() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the date when this source is no longer valid in the Metathesaurus (MEND).
getValidEndDate() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the date when this source is no longer valid in the Metathesaurus (MEND).
getValidFilters() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns the List of valid Filters.
getValidStartDate() - Method in class gov.nih.nlm.umls.meta.Source
Returns the date when this source becomes valid in the Metathesaurus (MSTART).
getValidStartDate() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the date when this source becomes valid in the Metathesaurus (MSTART).
getValidStartDate() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the date when this source becomes valid in the Metathesaurus (MSTART).
getValidateMessage() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Returns the message that the user will see if this GUIConfigurable is invalid.
getValidateMessage() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Returns the message that the user will see if this GUIConfigurable is invalid.
getValidateMessage() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Returns the message that the user will see if this GUIConfigurable is invalid.
getValidateMessage() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Returns the message that the user will see if this GUIConfigurable is invalid.
getValidateMessage() - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Returns a message indicating why validation failed.
getValidateMessage() - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Returns a message indicating why validation failed.
getValidateMessage() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
This method is the default message for filters that don't check for validity.
getValidateMessage() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Returns the validation message (if validation falied).
getValidateMessage() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
This method returns the message that the user will see if this filter is invalid.
getValidationErrors() - Method in interface gov.nih.nlm.mms.GUIConfigurable
Returns the messages indicating why validation failed.
getValidationErrors() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Returns the messages indicating why validation failed.
getValidationErrors() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Returns the messages indicating why validation failed.
getValidationErrors() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Returns the messages indicating why validation failed.
getValidationErrors() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Returns the messages indicating why validation failed.
getValidationErrors() - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Returns the messages indicating why validation failed.
getValidationErrors() - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Returns the messages indicating why validation failed.
getValidationErrors() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Returns the messages indicating why validation failed.
getValidationErrors() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Returns the messages indicating why validation failed.
getValidationWarnings() - Method in interface gov.nih.nlm.mms.GUIConfigurable
Returns warnings that were indicated during validation.
getValidationWarnings() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Returns warnings that were indicated during validation.
getValidationWarnings() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Returns warnings that were indicated during validation.
getValidationWarnings() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Returns warnings that were indicated during validation.
getValidationWarnings() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Returns warnings that were indicated during validation.
getValidationWarnings() - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Returns warnings that were indicated during validation.
getValidationWarnings() - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Returns warnings that were indicated during validation.
getValidationWarnings() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Returns warnings that were indicated during validation.
getValidationWarnings() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Returns warnings that were indicated during validation.
getValue() - Method in class gov.nih.nlm.swing.ListDialog
This method returns the user selection.
getValue() - Method in class gov.nih.nlm.swing.MultiLineInputDialog
Returns the value entered by the user.
getValue() - Method in class gov.nih.nlm.umls.meta.ContentView
Returns the value of the content view flag.
getValue() - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Returns the String that is being indexed.
getValue() - Method in interface gov.nih.nlm.umls.meta.MetaDescription
Returns the value.
getValue() - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Returns the String that is being indexed.
getValue() - Method in class gov.nih.nlm.umls.meta.impl.MetaDescriptionImpl
Returns the more detailed description.
getValue(int) - Method in class gov.nih.nlm.util.OrderedHashMap
Returns the Object value for a specified index.
getValueAt(int, int) - Method in class gov.nih.nlm.mms.filters.PrecedenceTableModel
Returns the value at the cell of the precedence table.
getValueAt(int, int) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveTableModel
Returns the value at the cell of the Semantic Types To Exclude table.
getValueAt(int, int) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveTableModel
Returns the value at the cell of the sources to exclude table.
getValueAt(int, int) - Method in class gov.nih.nlm.swing.TableMap
Returns the value for the specified cell from the underlying model.
getValueAt(int, int) - Method in class gov.nih.nlm.swing.TableSorter
Returns the value at the specified row and column from the underlying model.
getValues() - Method in class gov.nih.nlm.swing.ListDialog
This method returns the user selections.
getVcui() - Method in class gov.nih.nlm.umls.meta.Source
Returns the concept identifier for the versioned SRC concept (VCUI).
getVcui() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the concept identifier for the versioned SRC concept (VCUI).
getVcui() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for SourceMetaDescriptionImpl.getVersionedConceptIdentifier().
getVer() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Returns the release version in which the indicated change took place (VER).
getVer() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Returns the last release version in which the CUI1 was valid (VER).
getVer() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns the release version in which the indicated change took place (VER).
getVer() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Shorthand for ConceptMappingImpl.getLastReleaseVersion().
getVersion() - Static method in class gov.nih.nlm.mms.Version
Returns the package current version.
getVersion() - Static method in class gov.nih.nlm.mms.browser.Version
Returns the package current version.
getVersion() - Static method in class gov.nih.nlm.mms.cxt.Version
Returns the package current version.
getVersion() - Static method in class gov.nih.nlm.mms.filters.Version
Returns the package current version.
getVersion() - Static method in class gov.nih.nlm.swing.Version
Returns the package current version.
getVersion() - Static method in class gov.nih.nlm.umls.Version
Returns the package current version.
getVersion() - Static method in class gov.nih.nlm.umls.io.Version
Returns the package current version.
getVersion() - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Returns the release date or version number of a source (SVER).
getVersion() - Method in class gov.nih.nlm.umls.meta.Source
Returns source version (SVER).
getVersion() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns source version (SVER).
getVersion() - Static method in class gov.nih.nlm.umls.meta.Version
Returns the package current version.
getVersion() - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Returns the release date or version number of a source (SVER).
getVersion() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns source version (SVER).
getVersion() - Static method in class gov.nih.nlm.umls.meta.impl.Version
Returns the package current version.
getVersion() - Static method in class gov.nih.nlm.util.Version
Returns the package current version.
getVersionInformation() - Static method in class gov.nih.nlm.mms.Version
Returns the package current version information.
getVersionInformation() - Static method in class gov.nih.nlm.mms.browser.Version
Returns the package current version information.
getVersionInformation() - Static method in class gov.nih.nlm.mms.cxt.Version
Returns the package current version information.
getVersionInformation() - Static method in class gov.nih.nlm.mms.filters.Version
Returns the package current version information.
getVersionInformation() - Static method in class gov.nih.nlm.swing.Version
Returns the package current version information.
getVersionInformation() - Static method in class gov.nih.nlm.umls.Version
Returns the package current version information.
getVersionInformation() - Static method in class gov.nih.nlm.umls.io.Version
Returns the package current version information.
getVersionInformation() - Static method in class gov.nih.nlm.umls.meta.Version
Returns the package current version information.
getVersionInformation() - Static method in class gov.nih.nlm.umls.meta.impl.Version
Returns the package current version information.
getVersionInformation() - Static method in class gov.nih.nlm.util.Version
Returns the package current version information.
getVersionedConceptIdentifier() - Method in class gov.nih.nlm.umls.meta.Source
Returns the concept identifier for the versioned SRC concept (VCUI).
getVersionedConceptIdentifier() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the concept identifier for the versioned SRC concept (VCUI).
getVersionedConceptIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the concept identifier for the versioned SRC concept (VCUI).
getVersionedSabs() - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI
Indicates if MRCXT.RRF should be written with versioned or versionless source abbreviations.
getVersionedSourceAbbreviation() - Method in class gov.nih.nlm.umls.meta.Source
Returns the versioned source abbreviation (VSAB).
getVersionedSourceAbbreviation() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the versioned source abbreviation (VSAB).
getVersionedSourceAbbreviation() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Returns the versioned source abbreviation (VSAB).
getVsab() - Method in class gov.nih.nlm.umls.meta.Source
Returns the versioned source abbreviation (VSAB).
getVsab() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Returns the versioned source abbreviation (VSAB).
getVsab() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Shorthand for (@ link #getVersionedSourceAbbreviation()}.
getWelcomeGUI() - Static method in class gov.nih.nlm.mms.WelcomeGUI
Returns the singleton reference to the WelcomeGUI.
getWordCountThreshold() - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Returns the rank threshold value for searching.
getXc() - Method in interface gov.nih.nlm.umls.meta.ContextMember
Returns the "has child flag" value (XC).
getXc() - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Returns the "has child flag" value (XC).
getZipEntries(String) - Static method in class gov.nih.nlm.util.SystemToolkit
Returns a list of zip entry file names.
getZipInputStream(String, String) - Static method in class gov.nih.nlm.util.SystemToolkit
Returns an InputStream for the ZipEntry in the specified ZipFile.
gov.nih.nlm.mms - package gov.nih.nlm.mms
Core MetamorphoSys classes.
gov.nih.nlm.mms.browser - package gov.nih.nlm.mms.browser
UMLS Browser classes.
gov.nih.nlm.mms.cxt - package gov.nih.nlm.mms.cxt
MRCXT builder classes.
gov.nih.nlm.mms.filters - package gov.nih.nlm.mms.filters
MetamorphoSys filtering classes.
gov.nih.nlm.swing - package gov.nih.nlm.swing
Common graphical components and utilities.
gov.nih.nlm.umls - package gov.nih.nlm.umls
 
gov.nih.nlm.umls.io - package gov.nih.nlm.umls.io
Classes for building objects from the standard Metathesaurus release files.
gov.nih.nlm.umls.meta - package gov.nih.nlm.umls.meta
UMLS Objects API.
gov.nih.nlm.umls.meta.impl - package gov.nih.nlm.umls.meta.impl
UMLS Objects API Implementation.
gov.nih.nlm.util - package gov.nih.nlm.util
Common utilities.
gpl - Variable in class gov.nih.nlm.mms.ChecksumValidator
 
gui - Variable in class gov.nih.nlm.mms.ConceptInputStreamAction
 
gui - Variable in class gov.nih.nlm.mms.ConceptOutputStreamAction
 

H

HAS_POPUP_BORDER - Static variable in interface gov.nih.nlm.swing.SwingConstants
Fields in GUI applications which have popup menus should use this border.
HTMLDocumentRenderer - class gov.nih.nlm.util.HTMLDocumentRenderer.
Handles printing of HTML documents.
HTMLDocumentRenderer() - Constructor for class gov.nih.nlm.util.HTMLDocumentRenderer
Instantiates an HTMLDocumentRenderer.
HierarchicalSemanticType - class gov.nih.nlm.umls.meta.HierarchicalSemanticType.
Represents information about a semantic type in the semantic network.
HierarchicalSemanticType() - Constructor for class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Instantiates an empty HierarchicalSemanticType.
HtmlViewer - class gov.nih.nlm.swing.HtmlViewer.
Used to display an HTML documents.
HtmlViewer() - Constructor for class gov.nih.nlm.swing.HtmlViewer
Instantiates an HtmlViewer.
hasAdvancedOptions() - Method in interface gov.nih.nlm.mms.GUIConfigurable
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasAdvancedOptions() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasAdvancedOptions() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasAdvancedOptions() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasAdvancedOptions() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasAdvancedOptions() - Method in class gov.nih.nlm.mms.browser.CuiSearchFinder
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasAdvancedOptions() - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasAdvancedOptions() - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasAdvancedOptions() - Method in class gov.nih.nlm.mms.browser.TreeBrowserFinder
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasAdvancedOptions() - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasAdvancedOptions() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasAdvancedOptions() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasAdvancedOptions() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasAdvancedOptions() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasAdvancedOptions() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Indicates whether or not an options menu item should be supplied for advanced configuration options.
hasByteOrderMark() - Method in class gov.nih.nlm.util.UTF8InputStreamReader
 
hasChild() - Method in interface gov.nih.nlm.umls.meta.ContextMember
Indicates whether or not this context member has children.
hasChild() - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Indicates whether or not this context member has children.
hasDataChanged() - Method in interface gov.nih.nlm.mms.GUIConfigurable
Indicates whether or not the configuration information has changed.
hasDataChanged() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Returns a boolean indicating whether or not the values on this gui have changed.
hasDataChanged() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Indicates whether or not the values on this gui have changed.
hasDataChanged() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Returns a boolean indicating whether or not the values on this gui have changed.
hasDataChanged() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Returns a boolean indicating whether or not the values on this gui have changed.
hasDataChanged() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns a flag indicating whether or not the user has changed the underlying configuration since it was last loaded or saved.
hasDataChanged() - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Indicates whether or not the configuration information has changed.
hasDataChanged() - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Indicates whether or not the configuration information has changed.
hasDataChanged() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Method returns a boolean indicating whether or not the values in this filter have changed.
hasDependentSource(Source) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Returns if given Source has a dependent source.
hasFullContextData() - Method in interface gov.nih.nlm.mms.MetamorphoSysInputStream
Indicates whether this input source has full context data, such as that included in a MRCXT file.
hasFullContextData() - Method in class gov.nih.nlm.mms.NLMFileMetamorphoSysInputStream
Indicates whether this input source has full context data, such as that included in a MRCXT file.
hasFullContextData() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Indicates whether this input source has full context data, such as that included in a MRCXT file.
hasFullContextData() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Indicates whether this input source has full context data, such as that included in a MRCXT file.
hasMoreElements() - Method in class gov.nih.nlm.util.FieldedStringTokenizer
Returns the same value as the FieldedStringTokenizer.hasMoreTokens() method.
hasMoreTokens() - Method in class gov.nih.nlm.util.FieldedStringTokenizer
Tests if there are more tokens available from this tokenizer's string.
hasPreferredAtomIdentifier() - Method in interface gov.nih.nlm.umls.meta.Atom
Indicates whether or not this Atom is the preferred atom identifier for its Concept and string identifier.
hasPreferredAtomIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Indicates whether or not this Atom is the preferred atom identifier for its Concept and string identifier.
hasPreferredAui() - Method in interface gov.nih.nlm.umls.meta.Atom
Indicates whether or not this Atom is the preferred atom identifier for its Concept and string identifier.
hasPreferredAui() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.hasPreferredAtomIdentifier().
hasPreferredLui() - Method in interface gov.nih.nlm.umls.meta.Atom
Indicates whether or not this atom is part of the preferred Term of the Concept.
hasPreferredLui() - Method in interface gov.nih.nlm.umls.meta.Term
Indicates whether or not this Term is the preferred Term of the Concept.
hasPreferredLui() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.hasPreferredTermIdentifier()
hasPreferredLui() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Shorthand for TermImpl.hasPreferredTermIdentifier()
hasPreferredStringIdentifier() - Method in interface gov.nih.nlm.umls.meta.Atom
Indicates whether or not this atom has the preferred string identifier of the Term it is part of.
hasPreferredStringIdentifier() - Method in interface gov.nih.nlm.umls.meta.StringInfo
Indicates whether or not this atom has the preferred string identifier of the Term it is part of.
hasPreferredStringIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Indicates whether or not this atom has the preferred string identifier of the lexical class it is part of.
hasPreferredStringIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Indicates whether or not this has the preferred string identifier of the Term it is part of.
hasPreferredSui() - Method in interface gov.nih.nlm.umls.meta.Atom
Indicates whether or not this atom has the preferred string identifier of the Term it is part of.
hasPreferredSui() - Method in interface gov.nih.nlm.umls.meta.StringInfo
Indicates whether or not this atom has the preferred string identifier of the Term it is part of.
hasPreferredSui() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.hasPreferredStringIdentifier().
hasPreferredSui() - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Shorthand for StringInfoImpl.hasPreferredStringIdentifier().
hasPreferredTermIdentifier() - Method in interface gov.nih.nlm.umls.meta.Atom
Indicates whether or not this atom is part of the preferred Term of the Concept.
hasPreferredTermIdentifier() - Method in interface gov.nih.nlm.umls.meta.Term
Indicates whether or not this Term is the preferred Term of the Concept.
hasPreferredTermIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Indicates whether or not this atom is part of the preferred lexical class of the Concept.
hasPreferredTermIdentifier() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Indicates whether or not this Term is the preferred Term of the Concept.
has_data_changed - Variable in class gov.nih.nlm.mms.browser.AbstractConceptView
Indicates whether or not filter data has changed (and therefore needs to be saved).
has_data_changed - Variable in class gov.nih.nlm.mms.browser.AbstractFinder
Indicates whether or not filter data has changed (and therefore needs to be saved).
hashCode() - Method in class gov.nih.nlm.mms.Dependency
Return a hash code based on the source abbreviations.
hashCode() - Method in class gov.nih.nlm.mms.filters.AttType
Get hashcode based on source abbreviation and attribute type.
hashCode() - Method in class gov.nih.nlm.mms.filters.RelType
Get hashcode based on source abbreviation and relationship type
hashCode() - Method in class gov.nih.nlm.umls.meta.AbstractExpandedForm
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.Source
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.SourceTermType
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.AtomAttributeImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.AtomCoocurrenceImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Returns a hash code based on all fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.AtomRelationshipImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Returns a hash code based on all fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Return a hash code based on all fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Returns a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.MetaDescriptionImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.QualifierFrequencyImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipAttributeImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Returns a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Return a hash code based on key fields.
hashCode() - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Return a hash code based on key fields.
highlightText() - Method in class gov.nih.nlm.mms.browser.CuiSearchFinder
Highlights the text displayed in the cui text field.
highlightText() - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Highlights the text displayed in the word text field.

I

INIT_CUIS - Static variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
INSTALL_LEXICON - Static variable in class gov.nih.nlm.mms.InstallationProgressMonitor
 
INSTALL_LVG - Static variable in class gov.nih.nlm.mms.InstallationProgressMonitor
 
INSTALL_META - Static variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
INSTALL_NETWORK - Static variable in class gov.nih.nlm.mms.InstallationProgressMonitor
 
IS_REQUIRED_BORDER - Static variable in interface gov.nih.nlm.swing.SwingConstants
Fields in GUI applications which are required should use this border.
IdealWhitespaceDocument - class gov.nih.nlm.swing.IdealWhitespaceDocument.
PlainDocument implementation that prevents leading, training, duplicate, and redundant whitespace.
IdealWhitespaceDocument() - Constructor for class gov.nih.nlm.swing.IdealWhitespaceDocument
Instantiates an empty IdealWhitespaceDocument.
IgnorableListener - interface gov.nih.nlm.swing.IgnorableListener.
Generically represents a mechanism for disabling listener functionality while certain kinds of processing are taking place.
ImportFilterAction - class gov.nih.nlm.mms.ImportFilterAction.
Imports filters from the paths in the /ext directory Used for the File->Import Filter menu of MetamorphoSysGUI.
ImportFilterAction(MetamorphoSysGUI, MetamorphoSys) - Constructor for class gov.nih.nlm.mms.ImportFilterAction
Instantiates an ImportFilterAction.
IncreaseFontAction - class gov.nih.nlm.swing.IncreaseFontAction.
GUI Action used to decrease the font in a window.
IncreaseFontAction() - Constructor for class gov.nih.nlm.swing.IncreaseFontAction
Instantiates an IncreaseFontAction.
IndexBuilder - class gov.nih.nlm.umls.io.IndexBuilder.
Used for building an indexes for Metathesaurus files
IndexBuilder(String) - Constructor for class gov.nih.nlm.umls.io.IndexBuilder
Instantiates an IndexBuilder.
IndexEntry - interface gov.nih.nlm.umls.meta.IndexEntry.
Represents an entry from an cui index.
IndexEntryImpl - class gov.nih.nlm.umls.meta.impl.IndexEntryImpl.
Default implementation of the IndexEntry interface.
IndexEntryImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Instantiates an empty IndexEntry.
IndexEntryImpl(IndexEntry) - Constructor for class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Instantiates an IndexEntry from the specified IndexEntry.
IndexEntryQueue - class gov.nih.nlm.mms.IndexEntryQueue.
First In First Out queue for IndexEntry objects.
IndexEntryQueue(int) - Constructor for class gov.nih.nlm.mms.IndexEntryQueue
Instantiates a IndexEntryQueue with the specified size.
InputStreamFileStatisticsConfiguration - class gov.nih.nlm.umls.io.InputStreamFileStatisticsConfiguration.
Used to generate FileStatistics from an InputStream having structured lines like a config/mrpluscolsfiles.dat file.
InputStreamFileStatisticsConfiguration(InputStream) - Constructor for class gov.nih.nlm.umls.io.InputStreamFileStatisticsConfiguration
Instantiates a InputStreamFileStatisticsConfiguration from the specified InputStream.
InputStreamRedoHandler - class gov.nih.nlm.mms.InputStreamRedoHandler.
Handles redo operation for a change in input handler.
InputStreamRedoHandler(MetamorphoSysGUI, JTextField, JPanel) - Constructor for class gov.nih.nlm.mms.InputStreamRedoHandler
Instantiates an InputStreamRedoHandler.
InputStreamUndoHandler - class gov.nih.nlm.mms.InputStreamUndoHandler.
Handles undo operation for a change in input handler.
InputStreamUndoHandler(MetamorphoSysGUI, JTextField, JPanel) - Constructor for class gov.nih.nlm.mms.InputStreamUndoHandler
Instantiates an InputStreamUndoHandler.
InstallConfiguration - class gov.nih.nlm.mms.InstallConfiguration.
Represents the user's configuration choices up to the point where a configuration file is loaded and MetamorphoSysGUI is instantiated.
InstallationGUI - class gov.nih.nlm.mms.InstallationGUI.
Used to choose the basic installation options.
InstallationGUI() - Constructor for class gov.nih.nlm.mms.InstallationGUI
Instantiates the InstallationGUI.
InstallationProgressMonitor - class gov.nih.nlm.mms.InstallationProgressMonitor.
GUI for displaying subsetting progress.
InstallationProgressMonitor() - Constructor for class gov.nih.nlm.mms.InstallationProgressMonitor
Instantiates an InstallationProgressMonitor and initializes it.
IntegerDocument - class gov.nih.nlm.swing.IntegerDocument.
PlainDocument implementation that only accepts integer values.
IntegerDocument() - Constructor for class gov.nih.nlm.swing.IntegerDocument
Instantiates an empty IntegerDocument.
ignoreEvents() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveListSelectionListener
Method returns boolean to indicate whether or not ListSelectionEvents are to be ignored.
ignoreEvents() - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Method returns boolean to indicate whether or not ListSelectionEvents are to be ignored.
ignoreEvents() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveListSelectionListener
Method returns boolean to indicate whether or not ListSelectionEvents are to be ignored.
ignoreEvents() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupListSelectionListener
Returns boolean to indicate whether or not ListSelectionEvents are to be ignored.
ignoreEvents() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveListSelectionListener
Indicates whether or not events are being ignored.
ignoreEvents() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveListSelectionListener
Method returns boolean to indicate whether or not ListSelectionEvents are to be ignored.
ignoreEvents() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsListSelectionListener
Returns boolean to indicate whether or not ListSelectionEvents are to be ignored.
ignoreEvents() - Method in interface gov.nih.nlm.swing.IgnorableListener
Indicates whether or not events are to be ignored.
ignore_events - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
 
importFilter(Filter) - Method in class gov.nih.nlm.mms.UserConfiguration
Imports and enables the specified filter.
inCurrentSubset() - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Indicates whether or not this AtomMapping is in the current subset (MAPIN).
inCurrentSubset() - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Indicates whether or not this ConceptMapping is in the current subset (MAPIN).
inCurrentSubset() - Method in class gov.nih.nlm.umls.meta.Source
Indicates whether or not this source is represented in the current subset.
inCurrentSubset() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Indicates whether or not this source is represented in the current subset.
inCurrentSubset() - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Indicates whether or not this AtomMapping is in the current subset (MAPIN).
inCurrentSubset() - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Indicates whether or not this ConceptMapping is in the current subset (MAPIN).
inCurrentSubset() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Indicates whether or not this source is represented in the current subset.
inList(String) - Method in interface gov.nih.nlm.mms.CuiList
Returns true if any part of the Concept being kept.
inList(String) - Method in class gov.nih.nlm.mms.CuiSuiAuiList
Returns true if any part of the Concept is being kept.
inList(String, String, String) - Method in class gov.nih.nlm.mms.CuiSuiAuiList
Returns true if the cui,sui,aui combination is being kept.
increaseFontSize() - Static method in class gov.nih.nlm.swing.FontSizeManager
Increases font size of all managed containers.
incrementByteCount(int) - Method in class gov.nih.nlm.util.FileStatistics
Increments the byte count by a certain amount.
incrementLineCount() - Method in class gov.nih.nlm.util.FileStatistics
Increments the line count by 1.
index_counter - Variable in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
 
index_counter - Variable in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
 
index_lines - Variable in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
 
index_lines - Variable in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
 
init() - Method in class gov.nih.nlm.mms.browser.JEditorPaneFinderHandler
Initialize a find operation by reading all relevant settings and locking the dialog window.
init() - Method in interface gov.nih.nlm.util.FinderHandler
Initializes the find operation.
init_cui - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
 
init_cui - Variable in class gov.nih.nlm.mms.filters.AbstractFilter
 
initialize() - Method in class gov.nih.nlm.mms.ConfigureSubsetProgressMonitor
Configure the GUI.
initialize() - Method in class gov.nih.nlm.mms.InstallConfiguration
Reset the values.
initialize() - Method in class gov.nih.nlm.mms.InstallationProgressMonitor
Configure the GUI.
initialize() - Method in class gov.nih.nlm.mms.MMSProgressMonitor
Configure the GUI.
initialize() - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Initializes the GUI.
initialize() - Method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
Initializes the GUI.
initialize() - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI
Initializes the GUI.
initialize() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Set initial values for filter specific variables from user config file.
initialize(MetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.AdditionalRelationshipLabel
Initializes the Map used to track all of the AdditionalRelationshipLabels that exist at one time.
initialize(List) - Static method in class gov.nih.nlm.umls.meta.AdditionalRelationshipLabel
Initializes the Map used to track all of the AdditionalRelationshipLabels that exist at one time.
initialize(MetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.AttributeName
Initializes the Map used to track all of the AttributeNames that exist at one time.
initialize(List) - Static method in class gov.nih.nlm.umls.meta.AttributeName
Initializes the Map used to track all of the AttributeNames that exist at one time.
initialize(MetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.CoocurrenceType
Initializes the Map used to track all of the CoocurrenceTypes that exist at one time.
initialize(List) - Static method in class gov.nih.nlm.umls.meta.CoocurrenceType
Initializes the Map used to track all of the CoocurrenceTypes that exist at one time.
initialize(STYMetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Initializes the Map used to track all of the HierarchicalSemanticTypes that exist at one time.
initialize(List) - Static method in class gov.nih.nlm.umls.meta.HierarchicalSemanticType
Initializes the Map used to track all of the HierarchicalSemanticTypes that exist at one time.
initialize(MetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.Language
Initializes the Map used to track all of the Languages that exist at one time.
initialize(List) - Static method in class gov.nih.nlm.umls.meta.Language
Initializes the Map used to track all of the Languages that exist at one time.
initialize(MetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.MetaDescriptionInitializer
Initializes all of the MetaDescriptions at one time.
initialize(STYMetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.MetaDescriptionInitializer
Initializes all of the STYMetaDescriptions at one time.
initialize(SourceMetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.MetaDescriptionInitializer
Initializes all of the SourceMetaDescriptions at one time.
initialize(File, File, File) - Static method in class gov.nih.nlm.umls.meta.MetaDescriptionInitializer
Initializes any or all of the following files: MRDOC, MRSAB, SRDEF.
initialize(File, File, File, File) - Static method in class gov.nih.nlm.umls.meta.MetaDescriptionInitializer
Initializes any or all of the following files: MRDOC, MRSAB, SRDEF.
initialize(MetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.RelationshipLabel
Initializes the Map used to track all of the RelationshipLabels that exist at one time.
initialize(List) - Static method in class gov.nih.nlm.umls.meta.RelationshipLabel
Initializes the Map used to track all of the RelationshipLabels that exist at one time.
initialize(MetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.SemanticTypeGroup
Initializes the Map used to track all of the SemanticTypeGroups that exist at one time.
initialize(List) - Static method in class gov.nih.nlm.umls.meta.SemanticTypeGroup
Initializes the Map used to track all of the SemanticTypeGroups that exist at one time.
initialize(SourceMetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.Source
Initializes the Map used to track all of the Sources that exist at one time.
initialize(List) - Static method in class gov.nih.nlm.umls.meta.Source
Initializes the Map used to track all of the Sources that exist at one time.
initialize(MetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.SourceIdentifierType
Initializes the Map used to track all of the SourceIdentifierTypes that exist at one time.
initialize(List) - Static method in class gov.nih.nlm.umls.meta.SourceIdentifierType
Initializes the Map used to track all of the SourceIdentifierTypes that exist at one time.
initialize(MetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.StringType
Initializes the Map used to track all of the StringTypes that exist at one time.
initialize(List) - Static method in class gov.nih.nlm.umls.meta.StringType
Initializes the Map used to track all of the StringTypes that exist at one time.
initialize(MetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.Suppressible
Initializes the Map used to track all of the Suppressibles that exist at one time.
initialize(List) - Static method in class gov.nih.nlm.umls.meta.Suppressible
Initializes the Map used to track all of the Suppressibles that exist at one time.
initialize(MetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.TermStatus
Initializes the Map used to track all of the TermStatuses that exist at one time.
initialize(List) - Static method in class gov.nih.nlm.umls.meta.TermStatus
Initializes the Map used to track all of the TermStatuses that exist at one time.
initialize(MetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.TermType
Initializes the Map used to track all of the TermTypes that exist at one time.
initialize(List) - Static method in class gov.nih.nlm.umls.meta.TermType
Initializes the Map used to track all of the TermTypes that exist at one time.
initialize(MetaDescription[]) - Static method in class gov.nih.nlm.umls.meta.TermTypeGroup
Initializes the Map used to track all of the TermTypeGroups that exist at one time.
initialize(List) - Static method in class gov.nih.nlm.umls.meta.TermTypeGroup
Initializes the Map used to track all of the TermTypeGroups that exist at one time.
initializeConfigurable(Configurable) - Method in class gov.nih.nlm.mms.MetamorphoSys
Configures a filter or input/output stream.
initializeConfigurables() - Method in class gov.nih.nlm.mms.MetamorphoSys
Loads and configures the filters and input/output streams.
initializeGUIConfigurable(GUIConfigurable) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Configure the gui aspects of a GUIConfigurable.
initializeMaps(InputStream) - Method in class gov.nih.nlm.umls.io.InputStreamFileStatisticsConfiguration
Helper method for initializing MRFILES/MRCOLS configuration info.
insertString(int, String, AttributeSet) - Method in class gov.nih.nlm.swing.DoubleDocument
Overrides PlainDocument.insertString(int,String,AttributeSet) to allow only double precision floating point values.
insertString(int, String, AttributeSet) - Method in class gov.nih.nlm.swing.IdealWhitespaceDocument
Overrides PlainDocument.insertString(int,String,AttributeSet) to disallow: leading whitespace trailing whitespace any non-space character whitespace duplicate spaces
insertString(int, String, AttributeSet) - Method in class gov.nih.nlm.swing.IntegerDocument
Overrides PlainDocument.insertString(int,String,AttributeSet) to allow only int values.
install(Frame) - Static method in class gov.nih.nlm.mms.InstallConfiguration
Installs the Semantic Network and the Specialist Lexicon and Lexical Tools if they are selected on the InstallationGUI.
install_paths - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
instantiateObject(String) - Static method in class gov.nih.nlm.mms.MMSToolkit
Instantiates an object of the specified fully qualified type.
isAssertedDirection() - Method in interface gov.nih.nlm.umls.meta.Relationship
Indicates the directionality of this Relationship.
isAssertedDirection() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Indicates the directionality of this Relationship.
isBackHistoryEmpty() - Method in class gov.nih.nlm.mms.browser.ConceptListManager
Indicates if the backwards stack is empty.
isBorderOpaque() - Method in class gov.nih.nlm.swing.CenteredBackgroundBorder
 
isCancelled() - Method in class gov.nih.nlm.mms.DefaultSubsetSelectionGUI
Indicates whether or not the user clicked the "Cancel" button.
isCancelled() - Method in class gov.nih.nlm.mms.InstallationGUI
Indicates whether or not the installation was cancelled.
isCancelled() - Method in class gov.nih.nlm.mms.LicenseAgreementGUI
Indicates whether or not the license agreement was cancelled or not accepted.
isCancelled() - Method in class gov.nih.nlm.mms.MMSProgressMonitor
Indicates whether or not MetamorphoSys has been cancelled.
isCancelled() - Method in class gov.nih.nlm.mms.OpenConfigAction
Indicates whether or not the file chooser was cancelled.
isCancelled() - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderOutputStream
Indicates whether or not the license agreement was cancelled or not accepted.
isCellEditable(int, int) - Method in class gov.nih.nlm.swing.NoEditTableModel
Indicates that cells are NOT editable.
isCellEditable(int, int) - Method in class gov.nih.nlm.swing.TableMap
Returns a flag from the underlying model indicating whether or not the cell is editable.
isCopyToHardDriveChecked() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns whether or not the metamorphosys file and nlm files have been chosen for installation.
isCurrentVersion() - Method in class gov.nih.nlm.umls.meta.Source
Indicates whether or not this represents the current version of the source.
isCurrentVersion() - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Indicates whether or not this represents the current version of the source.
isCurrentVersion() - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Indicates whether or not this represents the current version of the source.
isCutDone() - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Returns true if a cut has been completed, false otherwise
isDragCompleted() - Method in class gov.nih.nlm.swing.XTabbedPane
Indicates if drag and drop of pane has been completed.
isEfficientEnabled() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
Indicates if Filter can use the efficient mode during the "Initialize Cuis" phase of the subsetting process.
isEfficientEnabled() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Indicates if Filter can use the efficient mode during the "Initialize Cuis" phase of the subsetting process.
isEfficientEnabled() - Method in interface gov.nih.nlm.mms.filters.Filter
Indicates if Filter can use the efficient mode during the "Initialize Cuis" phase of the subsetting process.
isEfficientEnabled() - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Indicates if Filter can use the efficient mode during the "Initialize Cuis" phase of the subsetting process.
isEfficientEnabled() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Indicates if Filter can use the efficient mode during the "Initialize Cuis" phase of the subsetting process.
isEfficientEnabled() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
Indicates if Filter can use the efficient mode during the "Initialize Cuis" phase of the subsetting process.
isEfficientEnabled() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Indicates if Filter can use the efficient mode during the "Initialize Cuis" phase of the subsetting process.
isEfficientEnabled() - Method in class gov.nih.nlm.mms.filters.RxNormFilter
Indicates if Filter can use the efficient mode during the "Initialize Cuis" phase of the subsetting process.
isEfficientEnabled() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Indicates whether or not this filter can use the efficient mode during the "Initialize Cuis" phase of the subsetting process.
isEfficientEnabled() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Indicates if Filter can use the efficient mode during the "Initialize Cuis" phase of the subsetting process.
isEfficientEnabled() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Indicates if Filter can use the efficient mode during the "Initialize Cuis" phase of the subsetting process.
isEfficientMode() - Method in interface gov.nih.nlm.mms.MetamorphoSysInputStream
Returns the mode in which subsetting will be run.
isEfficientMode() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Returns the mode in which subsetting will be run.
isEfficientMode() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Returns the mode in which subsetting will be run.
isEmpty() - Method in class gov.nih.nlm.mms.ConceptQueue
Indicates whether or not the queue is empty.
isEmpty() - Method in class gov.nih.nlm.mms.IndexEntryQueue
Indicates whether or not the queue is empty.
isEmpty() - Method in interface gov.nih.nlm.umls.meta.Concept
This indicates if the Concept is empty, meaning that either the SemanticType was removed or all of the Atoms were removed.
isEmpty() - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
This indicates if the Concept is empty, meaning that either the SemanticType was removed or all of the Atoms were removed.
isEmpty() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
 
isForwardHistoryEmpty() - Method in class gov.nih.nlm.mms.browser.ConceptListManager
Indicates if the forwards stack is empty.
isFull() - Method in class gov.nih.nlm.mms.ConceptQueue
Indicates whether or not the queue is full.
isFull() - Method in class gov.nih.nlm.mms.IndexEntryQueue
Indicates whether or not the queue is full.
isInstallUMLS() - Method in class gov.nih.nlm.mms.InstallConfiguration
Indicates whether the user chose the Install UMLS button on the WelcomeGUI.
isLanguageToRemove(String) - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
This method returns true if terms with the specified language should be excluded.
isLexiconChecked() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns whether or not the lexicon has been chosen for installation.
isLvgChecked() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns whether or not LVG has been chosen for installation.
isMatchCase() - Method in class gov.nih.nlm.swing.FindDialog
 
isMetathesaurusChecked() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns whether or not a directory should be created for the Metathesaurus.
isNewConfiguration() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns whether or not the user is running with a new configuration file.
isObsolete() - Method in class gov.nih.nlm.umls.meta.SourceTermType
Indicates whether or not this SourceTermType is obsolete.
isObsolete() - Method in interface gov.nih.nlm.umls.meta.SuppressibleElement
Indicates whether or not this element is obsolete.
isObsolete() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Indicates whether or not this AttributeImpl is obsolete.
isObsolete() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Indicates whether or not this AttributeValueImpl is obsolete.
isObsolete() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Indicates whether or not this DefinitionImpl is obsolete.
isObsolete() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Indicates whether or not this AtomImpl is obsolete.
isObsolete() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Indicates whether or not this RelationshipImpl is obsolete.
isOutputVersioned() - Method in class gov.nih.nlm.mms.UserConfiguration
Returns true if output stream should write versioned format.
isPasteDone() - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Returns true if a cut has been completed, false otherwise
isProducerFinished() - Method in class gov.nih.nlm.mms.ConceptQueue
Indicates whether or not the producer is finished adding Concepts.
isProducerFinished() - Method in class gov.nih.nlm.mms.IndexEntryQueue
Indicates whether or not the producer is finished adding IndexEntrys.
isQueryUserToOpenSavedConfig() - Method in class gov.nih.nlm.mms.InstallConfiguration
Indicates whether the user should be queried to open last saved configuration when initializing RRF Browser.
isRelationshipTypeToRemove(RelType) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method returns true if the given RelType is on the list of those to be exluded from the subset.
isSearchDown() - Method in class gov.nih.nlm.swing.FindDialog
 
isSearchUp() - Method in class gov.nih.nlm.swing.FindDialog
 
isSemanticNetworkChecked() - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns whether or not the semantic network has been chosen for installation.
isSemanticTypeToRemove(HierarchicalSemanticType) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Indicates whether or not the specified HierarchicalSemanticType is of the type to be removed.
isSourceToRemove(Source) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method returns a boolean depending on whether or not the Source is excluded from the subset.
isStartOnTop() - Method in class gov.nih.nlm.swing.FindDialog
 
isStopWord(String) - Static method in class gov.nih.nlm.util.SystemToolkit
Checks whether the word is one of the stop words.
isSuppressedTerm(Atom) - Method in class gov.nih.nlm.mms.ApplicationConfiguration
Returns a List of suppressible cui,sui values.
isSuppressible() - Method in class gov.nih.nlm.umls.meta.SourceTermType
Indicates whether or not this SourceTermType is suppressible.
isSuppressible() - Method in interface gov.nih.nlm.umls.meta.SuppressibleElement
Indicates whether or not this element is suppressible.
isSuppressible() - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Indicates whether or not this Attribute is suppressible.
isSuppressible() - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Indicates whether or not this AttributeValue is suppressible.
isSuppressible() - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Indicates whether or not this Atom is suppressible.
isSuppressible() - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Indicates whether or not this Atom is suppressible.
isSuppressible() - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Indicates whether or not this Atom is suppressible.
isTopLevel() - Method in interface gov.nih.nlm.umls.meta.Context
Indicates if context is of the top level.
isTopLevel() - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Indicates if context is of the top level.
ispref - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 

J

JComponentPrintHandler - class gov.nih.nlm.util.JComponentPrintHandler.
Handles printing of HTML documents.
JComponentPrintHandler() - Constructor for class gov.nih.nlm.util.JComponentPrintHandler
Instantiates an JComponentPrintHandler.
JEditorPaneFinderHandler - class gov.nih.nlm.mms.browser.JEditorPaneFinderHandler.
Handles a find operation on a JEditorPane.
JEditorPaneFinderHandler(JEditorPane) - Constructor for class gov.nih.nlm.mms.browser.JEditorPaneFinderHandler
Constructor.
jcancel - Variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
jconfig_subset - Variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
jdone - Variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
jeditor_pane - Variable in class gov.nih.nlm.util.HTMLDocumentRenderer
 
jeditor_pane - Variable in class gov.nih.nlm.util.JComponentPrintHandler
 
jeditor_pane - Variable in class gov.nih.nlm.util.OnePagePrintable
 
jeditor_pane - Variable in class gov.nih.nlm.util.TwoPagePrintable
 
jfinal_process - Variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
jinit_cui - Variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
jinstall_lexicon - Variable in class gov.nih.nlm.mms.InstallationProgressMonitor
 
jinstall_lvg - Variable in class gov.nih.nlm.mms.InstallationProgressMonitor
 
jinstall_meta - Variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
jinstall_network - Variable in class gov.nih.nlm.mms.InstallationProgressMonitor
 
jprogress_bar - Variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
jsubset_index - Variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
jsubset_mr - Variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
jtable - Variable in class gov.nih.nlm.util.JComponentPrintHandler
 
jtable - Variable in class gov.nih.nlm.util.OnePagePrintable
 
jtree - Variable in class gov.nih.nlm.util.JComponentPrintHandler
 
jtree - Variable in class gov.nih.nlm.util.OnePagePrintable
 

K

keep(Concept) - Method in interface gov.nih.nlm.mms.filters.ConceptSelector
Indicates if Concept should be selected to be kept for the subset.
keep(Concept) - Method in class gov.nih.nlm.mms.filters.RxNormFilter
Indicates if Concept should be selected to be kept for the subset.
keep(Concept) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Indicates if Concept should be selected to be kept for the subset.
keep(Object) - Method in class gov.nih.nlm.umls.meta.Atom.ByLanguageRestrictor
Returns whether or not the given Atom should be kept or not
keep(Object) - Method in class gov.nih.nlm.umls.meta.AtomElement.ByLanguageRestrictor
Returns whether or not the given AtomElement should be kept or not
keep(Object) - Method in class gov.nih.nlm.umls.meta.AtomElement.BySourceRestrictor
Returns whether or not the given AtomElement should be kept or not
keep(Object) - Method in class gov.nih.nlm.umls.meta.ChainRestrictor
Indicates if the given Object should be kept based on the Restrictors in the chain.
keep(ContentView) - Method in class gov.nih.nlm.umls.meta.ContentView
Indicates whether or not to keep the parent element by determining if this ContentView matches the one passed in.
keep(Object) - Method in interface gov.nih.nlm.umls.meta.Restrictor
 
keep(Object) - Method in class gov.nih.nlm.umls.meta.SourceElement.BySourceRestrictor
Returns whether or not the given SourceElement should be kept or not
keySet(Object) - Method in class gov.nih.nlm.util.MultiMap
Returns the key set for the specified "top" key.
key_fields - Variable in class gov.nih.nlm.umls.meta.impl.AttributeImpl
 
key_fields - Variable in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
 
key_fields - Variable in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
 
key_fields - Variable in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
 
key_fields - Variable in class gov.nih.nlm.umls.meta.impl.MappingImpl
 
key_fields - Variable in class gov.nih.nlm.umls.meta.impl.MetaDescriptionImpl
 
key_fields - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
key_fields - Variable in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
 
key_fields - Variable in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
 
key_fields_flag - Variable in class gov.nih.nlm.umls.meta.impl.AttributeImpl
 
key_fields_flag - Variable in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
 
key_fields_flag - Variable in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
 
key_fields_flag - Variable in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
 
key_fields_flag - Variable in class gov.nih.nlm.umls.meta.impl.MappingImpl
 
key_fields_flag - Variable in class gov.nih.nlm.umls.meta.impl.MetaDescriptionImpl
 
key_fields_flag - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
key_fields_flag - Variable in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
 
key_fields_flag - Variable in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
 
key_map - Static variable in class gov.nih.nlm.swing.SwingToolkit
 

L

Language - class gov.nih.nlm.umls.meta.Language.
Represents information about a language.
Language() - Constructor for class gov.nih.nlm.umls.meta.Language
Instantiates an empty Language.
LanguagesToRemoveFilter - class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter.
This Filter removes all CUI components with a given language
LanguagesToRemoveFilter() - Constructor for class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Every filter is required to have a no-arg constructor.
LicenseAgreementGUI - class gov.nih.nlm.mms.LicenseAgreementGUI.
Used to present the license agreement (or equivalent URL) to the user and have the user "accept" it before going on.
LicenseAgreementGUI(MetamorphoSys, Frame) - Constructor for class gov.nih.nlm.mms.LicenseAgreementGUI
Instantiates a LicenseAgreementGUI.
ListDialog - class gov.nih.nlm.swing.ListDialog.
JDialog used to present a user with a list of choices.
ListDialog(Component, Object, String, Object[], Object[], boolean) - Constructor for class gov.nih.nlm.swing.ListDialog
Instantiates a ListDialog from the specified parameters.
LocalException - exception gov.nih.nlm.mms.LocalException.
Represents an exception thrown by a "known" problem.
LocalException() - Constructor for class gov.nih.nlm.mms.LocalException
Instantiates an empty LocalException.
LocalException(String) - Constructor for class gov.nih.nlm.mms.LocalException
Instantiates a LocalException with the specified error message.
Locator - interface gov.nih.nlm.umls.meta.Locator.
Represents information about a locator, which provides linkings between Metathesaurus concepts and external databases.
LocatorImpl - class gov.nih.nlm.umls.meta.impl.LocatorImpl.
Default implementation of the Locator interface.
LocatorImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.LocatorImpl
Instantiates an empty Locator.
LocatorImpl(Locator) - Constructor for class gov.nih.nlm.umls.meta.impl.LocatorImpl
Instantiates a Locator from the specified Locator.
LowercaseWordIndexEntryImpl - class gov.nih.nlm.umls.meta.impl.LowercaseWordIndexEntryImpl.
Default implementation of the LowercaseWordIndexEntryImpl interface.
LowercaseWordIndexEntryImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.LowercaseWordIndexEntryImpl
Instantiates an empty LowercaseWordIndexEntryImpl.
LowercaseWordIndexEntryImpl(LowercaseWordIndexEntryImpl) - Constructor for class gov.nih.nlm.umls.meta.impl.LowercaseWordIndexEntryImpl
Instantiates a LowercaseWordIndexEntryImpl from the specified LowercaseWordIndexEntryImpl.
lastConfigFile - Static variable in class gov.nih.nlm.mms.SaveConfigAction
 
lat - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
line - Variable in class gov.nih.nlm.umls.io.PushBackReader
 
listener - Variable in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
 
listeners - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
 
listeners - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
 
listeners - Variable in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
 
load(String) - Method in class gov.nih.nlm.mms.UserConfiguration
Loads Properties from the specified file.
loadProperties(Properties) - Method in class gov.nih.nlm.mms.ApplicationConfiguration
Configures the class by reading in Properties.
loadProperties(Properties) - Method in class gov.nih.nlm.mms.UserConfiguration
Configures the class based on the Properties.
locators - Variable in class gov.nih.nlm.umls.meta.impl.ConceptImpl
 
lui - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
lui_to_cui_set - Variable in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
 
lui_to_cui_set - Variable in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
 

M

MMSProgressMonitor - class gov.nih.nlm.mms.MMSProgressMonitor.
Progress monitor for installation and subsetting.
MMSProgressMonitor() - Constructor for class gov.nih.nlm.mms.MMSProgressMonitor
 
MMSToolkit - class gov.nih.nlm.mms.MMSToolkit.
Utility class containing methods for MetamorphoSys applications.
MMSToolkit() - Constructor for class gov.nih.nlm.mms.MMSToolkit
 
MRCXTBuilderGUI - class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI.
GUI application for building MRCXT.RRF from MRCONSO.RRF and MRHIER.RRF
MRCXTBuilderGUI() - Constructor for class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI
Instantiates a MetamorphoSysGUI and builds the frame.
MRCXTBuilderOutputStream - class gov.nih.nlm.mms.cxt.MRCXTBuilderOutputStream.
Builds MRCXT.RRF from MRHIER.RRF and MRCONSO.RRF with the help of a few indexes.
MRCXTBuilderOutputStream() - Constructor for class gov.nih.nlm.mms.cxt.MRCXTBuilderOutputStream
Instantiates an empty MRCXTBuilderOutputStream.
MapObject - interface gov.nih.nlm.umls.meta.MapObject.
Represents information about the "to" or "from" end of a mapping.
MapObjectImpl - class gov.nih.nlm.umls.meta.impl.MapObjectImpl.
Default implementation of Mapping.
MapObjectImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Instantiates an empty MappingImpl.
MapObjectImpl(MapObject) - Constructor for class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Instantiates a MapObject from the specified MapObject.
Mapping - interface gov.nih.nlm.umls.meta.Mapping.
Represents information about a mapping from one kind of UMLS data to another.
MappingImpl - class gov.nih.nlm.umls.meta.impl.MappingImpl.
Default implementation of Mapping.
MappingImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.MappingImpl
Instantiates an empty MappingImpl.
MappingImpl(Mapping) - Constructor for class gov.nih.nlm.umls.meta.impl.MappingImpl
Instantiates a Mapping from the specified Mapping.
MetaDescription - interface gov.nih.nlm.umls.meta.MetaDescription.
Generically represents metadata having a key, a subkey, a type, and a more detailed description or value.
MetaDescriptionImpl - class gov.nih.nlm.umls.meta.impl.MetaDescriptionImpl.
Default implementation of the MetaDescription interface.
MetaDescriptionImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.MetaDescriptionImpl
Instantiates an empty MetaDescriptionImpl.
MetaDescriptionImpl(String) - Constructor for class gov.nih.nlm.umls.meta.impl.MetaDescriptionImpl
Constructor that takes a row from the MRDOC file.
MetaDescriptionImpl(MetaDescription) - Constructor for class gov.nih.nlm.umls.meta.impl.MetaDescriptionImpl
This is a copy constructor for MetaDescription.
MetaDescriptionInitializer - class gov.nih.nlm.umls.meta.MetaDescriptionInitializer.
Provides an easy mechanism for initializing the system from MRDOC, MRSAB, and SRDEF.
MetaDescriptionInitializer() - Constructor for class gov.nih.nlm.umls.meta.MetaDescriptionInitializer
Instantiates an empty MetaDescriptionInitializer.
MetamorphoSys - class gov.nih.nlm.mms.MetamorphoSys.
This class represents the MetamorphoSys application itself.
MetamorphoSys() - Constructor for class gov.nih.nlm.mms.MetamorphoSys
Instantiates a MetamorphoSys object, initializes the ApplicationConfiguration and UserConfigurations from the config/mmsys.a.prop and config/mmsys.prop.sav files.
MetamorphoSys(File, File) - Constructor for class gov.nih.nlm.mms.MetamorphoSys
Instantiates a MetamorphoSys object, initializes the ApplicationConfiguration and UserConfigurations.
MetamorphoSys(ApplicationConfiguration, UserConfiguration) - Constructor for class gov.nih.nlm.mms.MetamorphoSys
Instantiates a MetamorphoSys object.
MetamorphoSys(Properties, Properties) - Constructor for class gov.nih.nlm.mms.MetamorphoSys
Instantiates a MetamorphoSys object, initializes the ApplicationConfiguration and UserConfigurations.
MetamorphoSysGUI - class gov.nih.nlm.mms.MetamorphoSysGUI.
GUI application for configuring the MetamorphoSys subsetting operation.
MetamorphoSysGUI(MetamorphoSys) - Constructor for class gov.nih.nlm.mms.MetamorphoSysGUI
Instantiates a MetamorphoSysGUI and builds the frame.
MetamorphoSysInputStream - interface gov.nih.nlm.mms.MetamorphoSysInputStream.
Generically represents an input source for Metathesaurus data.
MetamorphoSysOutputStream - interface gov.nih.nlm.mms.MetamorphoSysOutputStream.
Generically represents an output source for Metathesaurus data.
MetamorphoSysWebStart - class gov.nih.nlm.mms.MetamorphoSysWebStart.
Java Web Start Launcher.
MetamorphoSysWebStart() - Constructor for class gov.nih.nlm.mms.MetamorphoSysWebStart
 
MetathesaurusInputStream - interface gov.nih.nlm.umls.io.MetathesaurusInputStream.
Generically represents a way of reading the entire Metathesaurus from some input source.
MetathesaurusOutputStream - interface gov.nih.nlm.umls.io.MetathesaurusOutputStream.
Generically represents a way for writing the Metathesaurus to some output source.
MultiLineInputDialog - class gov.nih.nlm.swing.MultiLineInputDialog.
JDialog used to request multi-line input from the user.
MultiLineInputDialog(Component, String, String, String) - Constructor for class gov.nih.nlm.swing.MultiLineInputDialog
Instantiates a MultiLineInputDialog from the specified parameters.
MultiMap - class gov.nih.nlm.util.MultiMap.
Represents a Map that uses two keys.
MultiMap() - Constructor for class gov.nih.nlm.util.MultiMap
Instantiates a MultiMap.
MultiplePathReader - class gov.nih.nlm.util.MultiplePathReader.
 
MultiplePathReader(BufferedReader[]) - Constructor for class gov.nih.nlm.util.MultiplePathReader
Instantiates a MultiplePathReader from the component BufferedReaders.
main(String[]) - Static method in class gov.nih.nlm.mms.BatchMetamorphoSys
 
main(String[]) - Static method in class gov.nih.nlm.mms.ConceptQueue
Self-qa test.
main(String[]) - Static method in class gov.nih.nlm.mms.IndexEntryQueue
Self-qa test.
main(String[]) - Static method in class gov.nih.nlm.mms.MetamorphoSys
Application entry point if no GUI is desired.
main(String[]) - Static method in class gov.nih.nlm.mms.MetamorphoSysWebStart
Standard Application entry point.
main(String[]) - Static method in class gov.nih.nlm.mms.Version
This can be used to print package version information on the command line.
main(String[]) - Static method in class gov.nih.nlm.mms.WelcomeGUI
Standard Application entry point.
main(String[]) - Static method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
Application entry point.
main(String[]) - Static method in class gov.nih.nlm.mms.browser.Version
This can be used to print package version information on the command line.
main(String[]) - Static method in class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI
Application entry point.
main(String[]) - Static method in class gov.nih.nlm.mms.cxt.Version
This can be used to print package version information on the command line.
main(String[]) - Static method in class gov.nih.nlm.mms.filters.Version
This can be used to print package version information on the command line.
main(String[]) - Static method in class gov.nih.nlm.swing.Version
This can be used to print package version information on the command line.
main(String[]) - Static method in class gov.nih.nlm.umls.Version
This can be used to print package version information on the command line.
main(String[]) - Static method in class gov.nih.nlm.umls.io.Version
This can be used to print package version information on the command line.
main(String[]) - Static method in class gov.nih.nlm.umls.meta.Version
This can be used to print package version information on the command line.
main(String[]) - Static method in class gov.nih.nlm.umls.meta.impl.Version
This can be used to print package version information on the command line.
main(String[]) - Static method in class gov.nih.nlm.util.BrowserLauncher
Self-qa test.
main(String[]) - Static method in class gov.nih.nlm.util.Enscript
Print a file based on the parameters
main(String[]) - Static method in class gov.nih.nlm.util.FieldedStringTokenizer
Self-qa test.
main(String[]) - Static method in class gov.nih.nlm.util.ObjectXMLSerializer
The main method performs a self-QA test
main(String[]) - Static method in class gov.nih.nlm.util.SystemToolkit
 
main(String[]) - Static method in class gov.nih.nlm.util.Version
This can be used to print package version information on the command line.
main_files - Variable in class gov.nih.nlm.mms.ChecksumValidator
 
makeCard(JTable, String) - Static method in class gov.nih.nlm.mms.MMSToolkit
Helper function to make panels for the MetamorphoSysGUI tabbed pane.
makeColorTransparent(Image, Color, Color) - Static method in class gov.nih.nlm.swing.SwingToolkit
Make a certain color transparent and return a new image.
mapIndex(int) - Method in class gov.nih.nlm.swing.SortableJTable
Maps the row index to the underlying model index.
mapIndex(int) - Method in class gov.nih.nlm.swing.TableSorter
Returns the mapped index for the specified table row index.
mappings - Variable in class gov.nih.nlm.umls.meta.impl.ConceptImpl
 
mark(int) - Method in class gov.nih.nlm.util.MultiplePathReader
Mark the present position in the stream.
md5(File) - Static method in class gov.nih.nlm.swing.SwingToolkit
Computes the MD5 of the specified file.
md5(String) - Static method in class gov.nih.nlm.util.SystemToolkit
Compute the MD5 hash of a string.
md5(String, String) - Static method in class gov.nih.nlm.util.SystemToolkit
Compute the MD5 hash of a string using the specified character encoding.
md5(File) - Static method in class gov.nih.nlm.util.SystemToolkit
Returns the MD5 value for the given File.
md5(File, ProgressMonitor) - Static method in class gov.nih.nlm.util.SystemToolkit
Returns the MD5 value for the given File.
md5CrossPlatform(File) - Static method in class gov.nih.nlm.util.SystemToolkit
Returns the MD5 value for the given File.
md5CrossPlatform(File, ProgressMonitor) - Static method in class gov.nih.nlm.util.SystemToolkit
Returns the MD5 value for the given File.
mms - Variable in class gov.nih.nlm.mms.SaveConfigAction
 
mmsys_input_stream_field - Variable in class gov.nih.nlm.mms.ConceptInputStreamAction
 
mmsys_output_stream_field - Variable in class gov.nih.nlm.mms.ConceptOutputStreamAction
 
model - Variable in class gov.nih.nlm.swing.TableMap
 
mousePressed(MouseEvent) - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView.PopupListener
 
mousePressed(MouseEvent) - Method in class gov.nih.nlm.mms.browser.ExpandableRawView.PopupListener
 
mousePressed(MouseEvent) - Method in class gov.nih.nlm.mms.browser.TreeBrowserFinder.PopupListener
 
mousePressed(MouseEvent) - Method in class gov.nih.nlm.mms.browser.WordSearchFinder.PopupListener
 
mouseReleased(MouseEvent) - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView.PopupListener
 
mouseReleased(MouseEvent) - Method in class gov.nih.nlm.mms.browser.ExpandableRawView.PopupListener
 
mouseReleased(MouseEvent) - Method in class gov.nih.nlm.mms.browser.TreeBrowserFinder.PopupListener
 
mouseReleased(MouseEvent) - Method in class gov.nih.nlm.mms.browser.WordSearchFinder.PopupListener
 
moveRow(int[], int) - Method in class gov.nih.nlm.mms.filters.PrecedenceTableModel
Moves rows in table from initial/drag location to final/drop location.
moveRow(int[], int) - Method in interface gov.nih.nlm.swing.CutandPasteDNDTableModel
Moves the rows at the specified drag indexes to the specified drop index.
moveSourceTermTypes(int[], int) - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
This method makes updates to the precedence list based on changes made by the user with the drag & drop interface.
mr_dir - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
mr_dir - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
 
mr_dir - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
 
mr_stats - Variable in class gov.nih.nlm.umls.io.InputStreamFileStatisticsConfiguration
 
mr_targets - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
 
mr_targets - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
 
mratx_source - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
mraui_source - Variable in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
 
mrcoc_source - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
mrcoc_source - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
mrcon_counter - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
mrcon_lines - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
mrcon_source - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
mrconso_counter - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
mrconso_lines - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
mrconso_source - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
mrcui_source - Variable in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
 
mrcui_source - Variable in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
 
mrcxt_source - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
mrcxt_source - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
mrdef_source - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
mrdef_source - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
mrdoc_source - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
mrhier_source - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
mrhist_source - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
mrlo_source - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
mrmap_source - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
mrrel_source - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
mrrel_source - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
mrsab_source - Variable in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
 
mrsab_source - Variable in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
 
mrsat_source - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
mrsat_source - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
mrso_source - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
mrsty_source - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
mrsty_source - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
mrx_sources - Variable in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
 
mrx_sources - Variable in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
 

N

NLMFileMetamorphoSysInputStream - class gov.nih.nlm.mms.NLMFileMetamorphoSysInputStream.
Represents a MetamorphoSysInputStream which are file(s) in the "NLM data file" format.
NLMFileMetamorphoSysInputStream() - Constructor for class gov.nih.nlm.mms.NLMFileMetamorphoSysInputStream
Instantiates an empty NLMFileMetamorphoSysInputStream.
NONE - Static variable in class gov.nih.nlm.swing.SortButtonRenderer
 
NULL_MOUSE_LISTENER - Static variable in class gov.nih.nlm.mms.DefaultSubsetSelectionGUI
 
NULL_MOUSE_LISTENER - Static variable in class gov.nih.nlm.mms.filters.SourcesToRemoveOptionsGUI
 
NewConfigAction - class gov.nih.nlm.mms.NewConfigAction.
Opens a new configuration file.
NewConfigAction(MetamorphoSys, Frame) - Constructor for class gov.nih.nlm.mms.NewConfigAction
Instantiates a NewConfigAction.
NoEditTableModel - class gov.nih.nlm.swing.NoEditTableModel.
DefaultTableModel that is not editable.
NoEditTableModel() - Constructor for class gov.nih.nlm.swing.NoEditTableModel
Instantiates an empty NoEditTableModel.
NoEditTableModel(Object[][], Object[]) - Constructor for class gov.nih.nlm.swing.NoEditTableModel
Instantiates a NoEditTableModel with the specified data and headers.
NoEditTableModel(Object[], int) - Constructor for class gov.nih.nlm.swing.NoEditTableModel
Instantiates a NoEditTableModel with the specified data and headers.
NoEditTableModel(Vector, int) - Constructor for class gov.nih.nlm.swing.NoEditTableModel
Instantiates a NoEditTableModel with the specified data and row count.
NoEditTableModel(Vector, Vector) - Constructor for class gov.nih.nlm.swing.NoEditTableModel
Instantiates a NoEditTableModel with the specified data and headers.
NormalizedStringIndexEntryImpl - class gov.nih.nlm.umls.meta.impl.NormalizedStringIndexEntryImpl.
Default implementation of the NormalizedStringIndexEntryImpl interface.
NormalizedStringIndexEntryImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.NormalizedStringIndexEntryImpl
Instantiates an empty NormalizedStringIndexEntryImpl.
NormalizedStringIndexEntryImpl(NormalizedStringIndexEntryImpl) - Constructor for class gov.nih.nlm.umls.meta.impl.NormalizedStringIndexEntryImpl
Instantiates a NormalizedStringIndexEntryImpl from the specified NormalizedStringIndexEntryImpl.
NormalizedWordIndexEntryImpl - class gov.nih.nlm.umls.meta.impl.NormalizedWordIndexEntryImpl.
Default implementation of the NormalizedWordIndexEntryImpl interface.
NormalizedWordIndexEntryImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.NormalizedWordIndexEntryImpl
Instantiates an empty NormalizedWordIndexEntryImpl.
NormalizedWordIndexEntryImpl(NormalizedWordIndexEntryImpl) - Constructor for class gov.nih.nlm.umls.meta.impl.NormalizedWordIndexEntryImpl
Instantiates a NormalizedWordIndexEntryImpl from the specified NormalizedWordIndexEntryImpl.
newInstanceFromMRCONSO(String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Instantiates an Atom from a MRCONSO.RRF line.
newInstanceFromMRHIER(String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Instantiates an Context from a MRHIER.RRF line.
newRRFBrowserGUI() - Static method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
 
nextElement() - Method in class gov.nih.nlm.util.FieldedStringTokenizer
Returns the same value as the FieldedStringTokenizer.nextToken() method, except that its declared return value is Object rather than String.
nextToken() - Method in class gov.nih.nlm.util.FieldedStringTokenizer
Returns the next token in this tokenizer's string.
normalized_mode - Static variable in class gov.nih.nlm.mms.browser.WordSearchFinder
 
notifyUser(String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Notifies the user of something.
notifyUser(Component, String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Notifies the user of something.
notifyUser(Component, String, String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Notifies the user of something.
notifyUserWithOption(Component, String, String, String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Notifies the user of something.

O

OP_FIND - Static variable in class gov.nih.nlm.swing.FindDialog
 
OP_NONE - Static variable in class gov.nih.nlm.swing.FindDialog
 
ObjectXMLSerializer - class gov.nih.nlm.util.ObjectXMLSerializer.
This class is used to provide an XML serialization scheme for ANY java object.
ObjectXMLSerializer() - Constructor for class gov.nih.nlm.util.ObjectXMLSerializer
Instantiates an empty ObjectXMLSerializer.
ObjectXMLSerializer.NotPersistentIfTransient - interface gov.nih.nlm.util.ObjectXMLSerializer.NotPersistentIfTransient.
Objects should implement this if they are to be ignored by the serializer and are marked as transient members.
ObjectXMLSerializer.Primitive - interface gov.nih.nlm.util.ObjectXMLSerializer.Primitive.
Anything implementing this method should also have a static newInstance(String) method.
OnePagePrintable - class gov.nih.nlm.util.OnePagePrintable.
Handles printing of the contents of a JEditorPane, JTree, and JTable using one page per sheet of paper.
OnePagePrintable(JEditorPane, String) - Constructor for class gov.nih.nlm.util.OnePagePrintable
Instantiates OnePagePrintable using the specified JEditorPane and String title.
OnePagePrintable(JTable, String) - Constructor for class gov.nih.nlm.util.OnePagePrintable
Instantiates OnePagePrintable using the specified JTable and String title.
OnePagePrintable(JTree, String) - Constructor for class gov.nih.nlm.util.OnePagePrintable
Instantiates OnePagePrintable using the specified JTree and String title.
OpenConfigAction - class gov.nih.nlm.mms.OpenConfigAction.
Opens a configuration file.
OpenConfigAction(MetamorphoSys, Frame) - Constructor for class gov.nih.nlm.mms.OpenConfigAction
Instantiates an OpenConfigAction.
OpenSubsetAction - class gov.nih.nlm.mms.browser.OpenSubsetAction.
This class is used for the File->Open Subset menu of the RRFBrowserGUI.
OpenSubsetAction(UserConfiguration, ConceptListManager) - Constructor for class gov.nih.nlm.mms.browser.OpenSubsetAction
Instantiates an OpenSubsetAction.
OpenSubsetAction - class gov.nih.nlm.mms.cxt.OpenSubsetAction.
This class is used for the Browse button on the MRCXTBuilderGUI.
OpenSubsetAction(UserConfiguration, MRCXTBuilderGUI) - Constructor for class gov.nih.nlm.mms.cxt.OpenSubsetAction
Instantiates an OpenSubsetAction.
OrderedHashMap - class gov.nih.nlm.util.OrderedHashMap.
A HashMap that maintains the order in which elements were added.
OrderedHashMap() - Constructor for class gov.nih.nlm.util.OrderedHashMap
Instantiates an empty OrderedHashMap.
OrderedHashMap(int) - Constructor for class gov.nih.nlm.util.OrderedHashMap
Instantiates an empty OrderedHashMap with the specified capacity.
OrderedHashMap(int, float) - Constructor for class gov.nih.nlm.util.OrderedHashMap
Instantiates an empty OrderedHashMap with the specified capacity and load factor.
OrderedHashMap(Map) - Constructor for class gov.nih.nlm.util.OrderedHashMap
Instantiates an OrderedHashMap from an existing Map.
OriginalMRFilesConceptInputStream - class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream.
This ConceptInputStream builds Concept objects from a full set of original format MR files.
OriginalMRFilesConceptInputStream() - Constructor for class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Instantiates an empty OriginalMRFilesConceptInputStream.
OriginalMRFilesConceptOutputStream - class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream.
This ConceptOutputStream generates a subset of standard MR files.
OriginalMRFilesConceptOutputStream() - Constructor for class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
Instantiates an empty OriginalMRFilesConceptOutputStream.
OriginalMRMetamorphoSysInputStream - class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream.
Represents an MetamorphoSysInputStream containing Original Release Format MR files in a directory.
OriginalMRMetamorphoSysInputStream() - Constructor for class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Instantiates an empty OriginalMRMetamorphoSysInputStream.
OriginalMRMetamorphoSysOutputStream - class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream.
Represents a MetamorphoSysOutputStream that writes a directory containing Original Release Format Metathesaurus files.
OriginalMRMetamorphoSysOutputStream() - Constructor for class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Instantiates an empty OriginalMRMetamorphoSysOutputStream.
OriginalMRMetathesaurusInputStream - class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream.
This MetathesaurusInputStream builds IndexEntrys, and ReleaseMetadata from a full set of standard MR files.
OriginalMRMetathesaurusInputStream() - Constructor for class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
Instantiates an empty OriginalMRMetathesaurusInputStream;
OriginalMRMetathesaurusOutputStream - class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream.
This MetathesaurusOutputStream generates standard MR files.
OriginalMRMetathesaurusOutputStream(FileStatisticsConfiguration) - Constructor for class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Instantiates an empty OriginalMRMetathesaurusOutputStream.
OutputStreamRedoHandler - class gov.nih.nlm.mms.OutputStreamRedoHandler.
Handles redo operation for a change in output handler.
OutputStreamRedoHandler(MetamorphoSysGUI, JTextField, JPanel) - Constructor for class gov.nih.nlm.mms.OutputStreamRedoHandler
Instantiates an OutputStreamRedoHandler.
OutputStreamUndoHandler - class gov.nih.nlm.mms.OutputStreamUndoHandler.
Handles undo operation for a change in output handler.
OutputStreamUndoHandler(MetamorphoSysGUI, JTextField, JPanel) - Constructor for class gov.nih.nlm.mms.OutputStreamUndoHandler
Outstantiates an OutputStreamUndoHandler.
objects_seen_read - Variable in class gov.nih.nlm.util.ObjectXMLSerializer
 
open(String) - Method in interface gov.nih.nlm.mms.ConceptInputStream
Opens the input stream.
open(String) - Method in interface gov.nih.nlm.mms.ConceptOutputStream
Opens the output stream.
open(String) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Opens all target files in the specified directory.
open(String) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Opens all target files in the specified directory.
open(String[]) - Method in interface gov.nih.nlm.umls.io.ConceptInputStream
Opens the input stream.
open(String) - Method in interface gov.nih.nlm.umls.io.ConceptOutputStream
Opens the output stream.
open(String[]) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Opens all of the MR Files in preparation for subsetting.
open(String) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
Opens all target files in the specified directory.
open(String[]) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
Opens all target files in the specified directory.
open(String[]) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Opens all of the MR Files in preparation for subsetting.
open(String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Opens all Rich Release Format MR files in the specified directory.
open(String[]) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
Opens all of the MR Files in preparation for subsetting.
openConfig() - Method in class gov.nih.nlm.mms.OpenConfigAction
Open the configuration, save if changed.
openMRFiles() - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderOutputStream
Opens the Rich Release Format MR files.
openMRFiles() - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Opens the Rich Release Format MR files.
openSourceFile(String) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Opens the specified file in the directory passed to OriginalMRFilesConceptInputStream.open(String[]).
openSourceFile(String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Opens the source file from the most current of the given installation paths in which this source is available.
openTargetFile(String) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Opens the specified file in the directory passed to OriginalMRMetamorphoSysOutputStream.open(String).
openTargetFile(String) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Opens the specified file in the directory passed to RichMRMetamorphoSysOutputStream.open(String).
openTargetFile(String) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
Opens the specified file in the directory passed to OriginalMRFilesConceptOutputStream.open(String).
openTargetFile(String) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Opens the specified file in the directory passed to OriginalMRFilesConceptOutputStream.open(String).
openTargetFile(String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Opens the specified file in the directory passed to RichMRFilesConceptOutputStream.open(String).
openTargetFile(String) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Opens the specified file in the directory passed to RichMRFilesConceptOutputStream.open(String).
openURL(String) - Static method in class gov.nih.nlm.util.BrowserLauncher
Attempts to open the default web browser to the given URL.
orderedKeySet() - Method in class gov.nih.nlm.util.OrderedHashMap
Returns the key set as an ordered List.
owner - Variable in class gov.nih.nlm.mms.SaveConfigAction
 

P

PasswordDialog - class gov.nih.nlm.swing.PasswordDialog.
JDialog used to obtain a username and password from a user.
PasswordDialog(Component, String, String, String) - Constructor for class gov.nih.nlm.swing.PasswordDialog
Instantiates a PasswordDialog from the specified parameters.
PlaceholderAtom - class gov.nih.nlm.umls.meta.impl.PlaceholderAtom.
Implementation of the Atom interface.
PlaceholderAtom() - Constructor for class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Instantiates an empty PlaceholderAtom.
PlaceholderAtom(Atom) - Constructor for class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Instantiates a PlaceholderAtom from the specified Atom.
PlaceholderConcept - class gov.nih.nlm.umls.meta.impl.PlaceholderConcept.
Implementation of the Concept interface.
PlaceholderConcept() - Constructor for class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Instantiates an empty PlaceholderConcept.
PrecedenceFilter - class gov.nih.nlm.mms.filters.PrecedenceFilter.
This Filter allows the user to reorder the source/termgroup rows in the table to indicate the ranking of termgroups desired.
PrecedenceFilter() - Constructor for class gov.nih.nlm.mms.filters.PrecedenceFilter
Instantiates a PrecedenceFilter.
PrecedenceTableModel - class gov.nih.nlm.mms.filters.PrecedenceTableModel.
Manages and initializes the data for the Precedence table
PrecedenceTableModel(ApplicationConfiguration, PrecedenceFilter) - Constructor for class gov.nih.nlm.mms.filters.PrecedenceTableModel
This constructor takes the initial values for the precedence table from the default configuration file.
PrintAction - class gov.nih.nlm.mms.browser.PrintAction.
Action used for printing a concept view.
PrintAction() - Constructor for class gov.nih.nlm.mms.browser.PrintAction
Instantiates a PrintAction.
PrintPreviewAction - class gov.nih.nlm.util.PrintPreviewAction.
Frame for previewing stuff to print
PrintPreviewAction(String, Action) - Constructor for class gov.nih.nlm.util.PrintPreviewAction
Instantiates a PrintPreviewAction from the specified info.
ProgressEvent - class gov.nih.nlm.util.ProgressEvent.
Generically represents an update to progress information.
ProgressEvent(Object, int, long, String) - Constructor for class gov.nih.nlm.util.ProgressEvent
Instantiates a ProgressEvent from the specified information.
ProgressListener - interface gov.nih.nlm.util.ProgressListener.
Generically listens for progress updates.
ProgressReporter - interface gov.nih.nlm.util.ProgressReporter.
Generically listens for progress updates.
PushBackReader - class gov.nih.nlm.umls.io.PushBackReader.
Extends BufferedReader to provide the ability to push a single line of input back onto the reader to read it again on the next readLine() call.
PushBackReader(BufferedReader) - Constructor for class gov.nih.nlm.umls.io.PushBackReader
Instantiates a new PushBackReader wrapped around the specified reader.
p_format - Variable in class gov.nih.nlm.util.HTMLDocumentRenderer
 
p_format - Variable in class gov.nih.nlm.util.JComponentPrintHandler
 
p_job - Variable in class gov.nih.nlm.util.HTMLDocumentRenderer
 
p_job - Variable in class gov.nih.nlm.util.JComponentPrintHandler
 
p_service - Variable in class gov.nih.nlm.util.HTMLDocumentRenderer
 
p_service - Variable in class gov.nih.nlm.util.JComponentPrintHandler
 
pageDialog() - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Displays a page setup dialog.
pageDialog() - Method in class gov.nih.nlm.util.JComponentPrintHandler
Displays a page setup dialog.
page_ct_label - Variable in class gov.nih.nlm.util.PrintPreviewAction
 
page_end_y - Variable in class gov.nih.nlm.util.OnePagePrintable
 
page_end_y - Variable in class gov.nih.nlm.util.TwoPagePrintable
 
page_height - Variable in class gov.nih.nlm.util.PrintPreviewAction
 
page_index - Variable in class gov.nih.nlm.util.PrintPreviewAction
 
page_start_y - Variable in class gov.nih.nlm.util.OnePagePrintable
 
page_start_y - Variable in class gov.nih.nlm.util.TwoPagePrintable
 
page_starts - Variable in class gov.nih.nlm.util.TwoPagePrintable
 
page_width - Variable in class gov.nih.nlm.util.PrintPreviewAction
 
pages_per_sheet - Variable in class gov.nih.nlm.util.HTMLDocumentRenderer
 
pages_per_sheet - Variable in class gov.nih.nlm.util.JComponentPrintHandler
 
pages_printed - Variable in class gov.nih.nlm.util.HTMLDocumentRenderer
 
pages_printed - Variable in class gov.nih.nlm.util.JComponentPrintHandler
 
pages_printed - Variable in class gov.nih.nlm.util.OnePagePrintable
 
pages_printed - Variable in class gov.nih.nlm.util.TwoPagePrintable
 
paintBorder(Component, Graphics, int, int, int, int) - Method in class gov.nih.nlm.swing.CenteredBackgroundBorder
 
paintIcon(Component, Graphics, int, int) - Method in class gov.nih.nlm.swing.BevelArrowIcon
Redraws the Icon.
paintIcon(Component, Graphics, int, int) - Method in class gov.nih.nlm.swing.BlankIcon
Repaints the BlankIcon.
pasteDoneinCutMode(CutandPasteModeEvent) - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
This method is called when a paste has been attempted illegally while in cut mode.
pasteDoneinCutMode(CutandPasteModeEvent) - Method in interface gov.nih.nlm.swing.CutandPasteModeListener
Informs the listener that a paste was made while in the mode where a cut was expected.
pasteDoneinPasteMode(CutandPasteModeEvent) - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
This method is called when a paste has appropriately been done while in paste mode.
pasteDoneinPasteMode(CutandPasteModeEvent) - Method in interface gov.nih.nlm.swing.CutandPasteModeListener
Informs the listener that a paste was made while in the mode where a paste was expected.
pasteRow(int) - Method in class gov.nih.nlm.mms.filters.PrecedenceTableModel
Pastes rows in table that were cut.
pasteRow(int) - Method in interface gov.nih.nlm.swing.CutandPasteDNDTableModel
Indicates the location where previously cut row should be pasted.
popOffRedoStack() - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Removes and returns top tuple off the redo stack.
popOffUndoStack() - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Removes and returns top tuple off the undo stack.
preview_container - Variable in class gov.nih.nlm.util.PrintPreviewAction
 
print() - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Prints the concept report.
print() - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Prints the concept report.
print() - Method in interface gov.nih.nlm.mms.browser.FullyPrintable
Prints.
print(HTMLDocument) - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Prints the specified HTMLDocument.
print(JEditorPane) - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Prints the specified JEditorPane.
print(PlainDocument) - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Prints the specified PlainDocument
print(JEditorPane) - Method in class gov.nih.nlm.util.JComponentPrintHandler
Prints the specified JEditorPane.
print(JTable) - Method in class gov.nih.nlm.util.JComponentPrintHandler
Prints the specified JTable.
print(JTree) - Method in class gov.nih.nlm.util.JComponentPrintHandler
Prints the specified JTable.
print(Graphics, PageFormat, int) - Method in class gov.nih.nlm.util.OnePagePrintable
The print method implements the Printable interface.
print(Graphics, PageFormat, int) - Method in class gov.nih.nlm.util.TwoPagePrintable
The print method implements the Printable interface.
printDialog() - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Displays the print dialog and initiates printing in response to user input.
printDialog() - Method in class gov.nih.nlm.util.JComponentPrintHandler
Displays the print dialog and initiates printing in response to user input.
printLine(String, String) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Prints the given line to the file with the given name.
printLine(String, String) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Prints the given line to the file with the given name.
printLine(String, String) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
Prints the given line to the file with the given name.
printLine(String, String) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Prints the given line to the file with the given name.
printLine(String, String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Prints the given line to the file with the given name.
printLine(String, String) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Prints the given line to the file with the given name.
printStackTrace(Exception, BufferedWriter) - Static method in class gov.nih.nlm.mms.MMSToolkit
Prints the stack trace from the given Exception to the given BufferedWriter.
printView(Graphics2D, Shape, View) - Method in class gov.nih.nlm.util.OnePagePrintable
printView is a recursive method which iterates through the tree structure of the view sent to it.
printView(Graphics2D, Shape, View) - Method in class gov.nih.nlm.util.TwoPagePrintable
printView is a recursive method which iterates through the tree structure of the view sent to it.
print_action - Variable in class gov.nih.nlm.util.PrintPreviewAction
 
printable - Variable in class gov.nih.nlm.util.PrintPreviewAction
 
printer_name - Variable in class gov.nih.nlm.util.HTMLDocumentRenderer
 
printer_name - Variable in class gov.nih.nlm.util.JComponentPrintHandler
 
processField(String) - Method in class gov.nih.nlm.util.ColumnStatistics
Computes statistics for the field.
processKeyEvent(KeyEvent) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Event handler for -X and -V key presses.
processLine(String) - Method in class gov.nih.nlm.util.FileStatistics
Compute statistics for the line of the file.
processMouseEvent(MouseEvent) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Event handler for mouse events.
processMouseEvent(MouseEvent) - Method in class gov.nih.nlm.swing.SuperJList
Opens the popup menu if the is one, otherwise forwards the request to the superclass.
progress_label - Variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
properties - Static variable in class gov.nih.nlm.swing.SwingToolkit
 
ps - Variable in class gov.nih.nlm.util.PrintPreviewAction
 
push(String) - Method in class gov.nih.nlm.umls.io.PushBackReader
Push a line of input back onto the reader.
pushOnRedoStack(Object[]) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Pushes an Object[] tuple onto the redo stack.
pushOnUndoStack(Object[]) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Pushes an Object[] tuple onto the undo stack.
put(Concept) - Method in class gov.nih.nlm.mms.ConceptQueue
Adds a concept to the queue, blocks if the queue is full afterwards.
put(IndexEntry) - Method in class gov.nih.nlm.mms.IndexEntryQueue
Adds a index entry to the queue, blocks if the queue is full afterwards.
put(Object, Object, Object) - Method in class gov.nih.nlm.util.MultiMap
Puts the key/value pair into the map using the specified "top" key.
put(Object, Object) - Method in class gov.nih.nlm.util.OrderedHashMap
Adds a key/value pair.
putAll(Map) - Method in class gov.nih.nlm.util.OrderedHashMap
Adds all elements from the specified Map.

Q

QualifierFrequency - interface gov.nih.nlm.umls.meta.QualifierFrequency.
Represents a coocurrence qualifier with a frequency.
QualifierFrequencyImpl - class gov.nih.nlm.umls.meta.impl.QualifierFrequencyImpl.
Default implementation of the QualifierFrequency interface.
QualifierFrequencyImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.QualifierFrequencyImpl
Instantiates an empty QualifierFrequency.
QualifierFrequencyImpl(QualifierFrequency) - Constructor for class gov.nih.nlm.umls.meta.impl.QualifierFrequencyImpl
Instantiates a QualifierFrequency from the specified QualifierFrequency.

R

RRFBrowserGUI - class gov.nih.nlm.mms.browser.RRFBrowserGUI.
GUI application for viewing the data in a MetamorphoSys subset.
RedoAction - class gov.nih.nlm.mms.RedoAction.
Re-performs an undone action.
RedoAction(MetamorphoSysGUI) - Constructor for class gov.nih.nlm.mms.RedoAction
Instantiates a RedoAction.
RedoHandler - interface gov.nih.nlm.mms.RedoHandler.
Generically represents a handler for re-performing an undone action.
RelType - class gov.nih.nlm.mms.filters.RelType.
Class contains all fields relevant to a relationship type.
RelType() - Constructor for class gov.nih.nlm.mms.filters.RelType
This is the default no-argument constructor
RelType(String) - Constructor for class gov.nih.nlm.mms.filters.RelType
This constructor takes a String in the form sab|type.
RelType(String, String) - Constructor for class gov.nih.nlm.mms.filters.RelType
This constructor takes initial values for each of the fields in the RelType.
RelType(Source, String) - Constructor for class gov.nih.nlm.mms.filters.RelType
This constructor takes initial values for each of the fields in the RelType.
RelatedAtomElement - interface gov.nih.nlm.umls.meta.RelatedAtomElement.
Generically represents an object that is related to an Atom.
RelatedConceptElement - interface gov.nih.nlm.umls.meta.RelatedConceptElement.
Represents information about a related concept Concept.
RelatedSourceIdentifierElement - interface gov.nih.nlm.umls.meta.RelatedSourceIdentifierElement.
Represents information about a data element connected to a SourceIdentifierType.
Relationship - interface gov.nih.nlm.umls.meta.Relationship.
Represents a relationship between two Concepts or two Atoms.
RelationshipAttribute - interface gov.nih.nlm.umls.meta.RelationshipAttribute.
Represents information about an attribute attached to a Relationship.
RelationshipAttributeImpl - class gov.nih.nlm.umls.meta.impl.RelationshipAttributeImpl.
Implementation of the RelationshipAttribute interface.
RelationshipAttributeImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.RelationshipAttributeImpl
Instantiate an empty RelationshipAttribute.
RelationshipAttributeImpl(RelationshipAttribute) - Constructor for class gov.nih.nlm.umls.meta.impl.RelationshipAttributeImpl
This is a copy constructor for RelationshipAttribute.
RelationshipElement - interface gov.nih.nlm.umls.meta.RelationshipElement.
Represents information about a data element with relationship identifiers.
RelationshipImpl - class gov.nih.nlm.umls.meta.impl.RelationshipImpl.
Default implementation of the Relationship interface.
RelationshipImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Instantiates an empty Relationship.
RelationshipImpl(Relationship) - Constructor for class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Instantiates a Relationship from the specified Relationship.
RelationshipLabel - class gov.nih.nlm.umls.meta.RelationshipLabel.
Represents a relationship label value.
RelationshipLabel() - Constructor for class gov.nih.nlm.umls.meta.RelationshipLabel
Instantiates an empty RelationshipLabel.
RelationshipTypesToRemoveFilter - class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter.
This Filter removes all CUIs with a given relationship type.
RelationshipTypesToRemoveFilter() - Constructor for class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
Every filter is required to have a no-arg constructor.
RelationshipTypesToRemoveListSelectionListener - class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveListSelectionListener.
List selection listener for the Relationship Types To Exclude table.
RelationshipTypesToRemoveListSelectionListener(RelationshipTypesToRemoveFilter, SortableJTable) - Constructor for class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveListSelectionListener
Initializes selections on the sources that will be excluded.
ReleaseMetadata - interface gov.nih.nlm.umls.meta.ReleaseMetadata.
Represents information about a release of the Metathesaurus.
ReleaseMetadataImpl - class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl.
Default implementation of the ReleaseMetadata interface.
ReleaseMetadataImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Instantiates an empty ReleaseMetadataImpl.
ReleaseMetadataImpl(ReleaseMetadataImpl) - Constructor for class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Instantiates a ReleaseMetadataImpl from the specified ReleaseMetadataImpl.
RemoveByTermgroupFilter - class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter.
Computes which content is removable based on source/term types and removes it.
RemoveByTermgroupFilter() - Constructor for class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Instantiates an empty RemoveByTermgroupFilter.
RemoveByTermgroupListSelectionListener - class gov.nih.nlm.mms.filters.RemoveByTermgroupListSelectionListener.
List selection listener for the remove term types table.
RemoveByTermgroupListSelectionListener(RemoveByTermgroupFilter, SortableJTable) - Constructor for class gov.nih.nlm.mms.filters.RemoveByTermgroupListSelectionListener
Instantiates a RemoveByTermgroupListSelectionListener with the specified RemoveByTermgroupFilter and SortableJTable.
ReportsManager - class gov.nih.nlm.mms.browser.ReportsManager.
Manages the various ConceptViews.
ReportsManager() - Constructor for class gov.nih.nlm.mms.browser.ReportsManager
Instantiates an ReportsManager.
Restrictor - interface gov.nih.nlm.umls.meta.Restrictor.
 
RichMRFilesConceptInputStream - class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream.
This ConceptInputStream builds Concept objects from a full set of "Rich Release Format" MR files.
RichMRFilesConceptInputStream() - Constructor for class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Instantiates an empty RichMRFilesConceptInputStream;
RichMRFilesConceptOutputStream - class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream.
This ConceptOutputStream generates a subset of "Rich Release Format" MR files.
RichMRFilesConceptOutputStream() - Constructor for class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Instantiates an empty RichMRFilesConceptOutputStream.
RichMRFilesIndexLookup - class gov.nih.nlm.umls.io.RichMRFilesIndexLookup.
Peforms a lookup in the index files to locate the Concepts that contain given words.
RichMRFilesIndexLookup(String) - Constructor for class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Instantiates an RichMRFilesIndexLookup from the specified input directory.
RichMRFilesSingleConceptInputStream - class gov.nih.nlm.umls.io.RichMRFilesSingleConceptInputStream.
Builds a single Concept from a full set of "Rich Release Format" MR files.
RichMRFilesSingleConceptInputStream(String, String) - Constructor for class gov.nih.nlm.umls.io.RichMRFilesSingleConceptInputStream
Instantiates an empty RichMRFilesSingleConceptInputStream;
RichMRMetamorphoSysInputStream - class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream.
Represents a MetamorphoSysInputStream that reads content from a directory containing Rich Release Format Metathesaurus files.
RichMRMetamorphoSysInputStream() - Constructor for class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Instantiates an empty RichMRMetamorphoSysInputStream.
RichMRMetamorphoSysOutputStream - class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream.
This MetamorphoSysOutputStream obtains data from the MetamorphoSys subset routine and generates a subset of Rich Release MR files.
RichMRMetamorphoSysOutputStream() - Constructor for class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Instantiates an empty RichMRMetamorphoSysOutputStream.
RichMRMetathesaurusInputStream - class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream.
This ConceptInputStream builds objects from a full set of "Rich Release Format" MR files.
RichMRMetathesaurusInputStream() - Constructor for class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
Instantiates an empty RichMRMetathesaurusInputStream;
RichMRMetathesaurusOutputStream - class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream.
This MetathesaurusOutputStream generates MR files in the "Rich Release Format".
RichMRMetathesaurusOutputStream(FileStatisticsConfiguration) - Constructor for class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Instantiates an empty RichMRMetathesaurusOutputStream.
RxNormFilter - class gov.nih.nlm.mms.filters.RxNormFilter.
Metathesaurus subset containing concepts connected in the RxNorm "graph" along with their MTH-related concepts.
RxNormFilter() - Constructor for class gov.nih.nlm.mms.filters.RxNormFilter
Constructs a filter.
raf - Variable in class gov.nih.nlm.umls.io.SearchStringPushBackReader
 
readConcept() - Method in interface gov.nih.nlm.mms.ConceptInputStream
Read a Concept from the input stream and return it.
readConcept() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Returns a Concept containing data from the MR Files.
readConcept() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Returns a Concept containing data from the MR Files.
readConcept(Concept) - Method in class gov.nih.nlm.mms.browser.ConceptListManager
Reads and fully populates a Concept that otherwise has just a CUI value.
readConcept() - Method in interface gov.nih.nlm.umls.io.ConceptInputStream
Read a Concept from the input stream and return it.
readConcept() - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
Returns the next Concept from the MR Files.
readConcept() - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Returns a Concept containing data from the MR files.
readFieldedFile(File, String) - Static method in class gov.nih.nlm.util.SystemToolkit
Reads the fielded file into a two-dimensional string array.
readFieldedReader(BufferedReader, String) - Static method in class gov.nih.nlm.util.SystemToolkit
Reads the fielded file into a two-dimensional string array.
readIndexEntry() - Method in interface gov.nih.nlm.mms.ConceptInputStream
Read an IndexEntry from the input stream and return it.
readIndexEntry() - Method in interface gov.nih.nlm.umls.io.MetathesaurusInputStream
Read an IndexEntry from the input stream and return it.
readIndexEntry() - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
Returns an IndexEntry from one of the index files.
readIndexEntry() - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
Returns an IndexEntry from one of the index files.
readLine() - Method in class gov.nih.nlm.umls.io.PushBackReader
Returns the next line from the reader.
readLine() - Method in class gov.nih.nlm.umls.io.SearchStringPushBackReader
Returns the next line from the reader.
readLine() - Method in class gov.nih.nlm.util.MultiplePathReader
Read a line of text from the current BufferedReader.
readLine(RandomAccessFile, String) - Static method in class gov.nih.nlm.util.SystemToolkit
Reads and returns a line from the RandomAccessFile using the specified character set.
readReleaseMetadata() - Method in interface gov.nih.nlm.mms.ConceptInputStream
Read the ReleaseMetadata from the input stream and return it.
readReleaseMetadata() - Method in interface gov.nih.nlm.umls.io.MetathesaurusInputStream
Read the ReleaseMetadata from the input stream and return it.
readReleaseMetadata() - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusInputStream
Returns the ReleaseMetadata containing data from MRSAB, MRDOC and MRCUI.
readReleaseMetadata() - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusInputStream
Returns the ReleaseMetadata containing data from MRSAB.RRF, MRCUI.RRF, MRAUI.RRF, and MRDOC.RRF.
readScaledImage(URL, int, boolean) - Static method in class gov.nih.nlm.swing.SwingToolkit
Read a scaled image from the specified URL.
readTar(InputStream, String, File, Frame) - Static method in class gov.nih.nlm.mms.MMSToolkit
 
reallocateIndexes() - Method in class gov.nih.nlm.swing.TableSorter
Resets the map so that the first row of the table corresponds to the first index of the underlying model.
redo(Object, Object) - Method in class gov.nih.nlm.mms.EnableFilterRedoHandler
Performs the redo operation and prepares the undo stack.
redo(Object, Object) - Method in class gov.nih.nlm.mms.GUIConfigurableRedoHandler
Performs the redo operation.
redo(Object, Object) - Method in class gov.nih.nlm.mms.InputStreamRedoHandler
Performs the redo operation.
redo(Object, Object) - Method in class gov.nih.nlm.mms.OutputStreamRedoHandler
Performs the redo operation.
redo(Object, Object) - Method in interface gov.nih.nlm.mms.RedoHandler
Performs the redo operation.
refresh() - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Redraws the text portions of the Finder.
refresh() - Method in class gov.nih.nlm.mms.browser.ConceptListManager
Refresh the current concept view if set.
refresh() - Method in class gov.nih.nlm.mms.browser.CuiSearchFinder
Redraws the text portions of the Finder.
refresh() - Method in interface gov.nih.nlm.mms.browser.Finder
Redraws the text portions of the Finder.
refresh() - Method in class gov.nih.nlm.mms.browser.TreeBrowserFinder
Redraws the text portions of the Finder.
refresh() - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Redraws the text portions of the Finder.
refreshGui() - Method in class gov.nih.nlm.mms.OpenConfigAction
Refresh the GUI.
regular_mode - Static variable in class gov.nih.nlm.mms.browser.WordSearchFinder
 
rel_hm - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
relationships - Variable in class gov.nih.nlm.umls.meta.impl.ConceptImpl
 
remove(Restrictor) - Method in class gov.nih.nlm.umls.meta.ChainRestrictor
Removes the given Restrictor from the chain so it will not be applied.
remove(Object, Object) - Method in class gov.nih.nlm.util.MultiMap
Removes the entry for the specified keys.
remove(Object) - Method in class gov.nih.nlm.util.OrderedHashMap
Removes the mapping for the specified key.
removeAtom(Atom) - Method in interface gov.nih.nlm.umls.meta.Concept
Removes the specified Atom.
removeAtom(Atom) - Method in interface gov.nih.nlm.umls.meta.StringInfo
Removes the specified Atom.
removeAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Removes the specified Atom and the AtomAttributes attached to it.
removeAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Removes the specified Atom.
removeAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Removes the specified Atom.
removeAtomMapping(AtomMapping) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Removes the specified AtomMapping.
removeAtomMapping(AtomMapping) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Removes the specified AtomMapping.
removeAttribute(AtomAttribute) - Method in interface gov.nih.nlm.umls.meta.Atom
Removes the specified AtomAttribute.
removeAttribute(Attribute) - Method in interface gov.nih.nlm.umls.meta.Concept
Removes the specified Attribute.
removeAttribute(RelationshipAttribute) - Method in interface gov.nih.nlm.umls.meta.Relationship
Removes the specified RelationshipAttribute.
removeAttribute(AtomAttribute) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Removes the specified AtomAttribute.
removeAttribute(Attribute) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Removes the specified Attribute.
removeAttribute(AtomAttribute) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Removes the specified AtomAttribute.
removeAttribute(Attribute) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Removes the specified Attribute.
removeAttribute(RelationshipAttribute) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Removes the specified RelationshipAttribute.
removeAttributeContext(AttributeContext) - Method in interface gov.nih.nlm.umls.meta.StringAttribute
Removes the specified AttributeContext.
removeAttributeContext(AttributeContext) - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Removes the specified AttributeContext.
removeAttributeTypeToRemove(AttType) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method removes a AttType from the data structure that holds the list of attribute_types to be excluded.
removeAttributeValue(AttributeValue) - Method in interface gov.nih.nlm.umls.meta.AttributeContext
Removes the specified AttributeValue.
removeAttributeValue(AttributeValue) - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Removes the specified AttributeValue.
removeComponentHistory(ComponentHistory) - Method in interface gov.nih.nlm.umls.meta.Concept
Removes the specified ComponentHistory.
removeComponentHistory(ComponentHistory) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Removes the specified ComponentHistory.
removeComponentHistory(ComponentHistory) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Removes the specified ComponentHistory.
removeConceptMapping(ConceptMapping) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Removes the specified ConceptMapping.
removeConceptMapping(ConceptMapping) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Removes the specified ConceptMapping.
removeContainer(Container) - Static method in class gov.nih.nlm.swing.FontSizeManager
Removes a Container from the list of Containers whose font size will be managed.
removeContext(Context) - Method in interface gov.nih.nlm.umls.meta.Atom
Removes the specified Context.
removeContext(Context) - Method in interface gov.nih.nlm.umls.meta.Concept
Removes the specified Context.
removeContext(Context) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Removes the specified Context.
removeContext(Context) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Removes the specified Context.
removeContext(Context) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Removes the specified Context.
removeContext(Context) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Removes the specified Context.
removeContextMember(ContextMember) - Method in interface gov.nih.nlm.umls.meta.Context
Removes the specified ContextMember.
removeContextMember(ContextMember) - Method in interface gov.nih.nlm.umls.meta.SourceContext
Removes the specified ContextMember.
removeContextMember(ContextMember) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Removes the specified ContextMember.
removeContextMember(ContextMember) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Removes the specified ContextMember.
removeCoocurrence(Coocurrence) - Method in interface gov.nih.nlm.umls.meta.Atom
Removes the specified Coocurrence.
removeCoocurrence(Coocurrence) - Method in interface gov.nih.nlm.umls.meta.Concept
Removes the specified Coocurrence.
removeCoocurrence(Coocurrence) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Removes the specified Coocurrence.
removeCoocurrence(Coocurrence) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Removes the specified Coocurrence.
removeCoocurrence(Coocurrence) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Removes the specified Coocurrence.
removeCoocurrence(Coocurrence) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Removes the specified Coocurrence.
removeCoocurrenceContext(CoocurrenceContext) - Method in interface gov.nih.nlm.umls.meta.CoocurrenceGroup
Removes the specified CoocurrenceContext.
removeCoocurrenceContext(CoocurrenceContext) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Removes the specified CoocurrenceContext.
removeCui(String) - Method in interface gov.nih.nlm.mms.CuiList
Enables a filter to specify a Cui that should be removed from the cui list.
removeCui(String) - Method in class gov.nih.nlm.mms.CuiSuiAuiList
Enables a filter to specify a Cui that should be removed from the cui list.
removeCutandPasteModeListener(CutandPasteModeListener) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Removes a CutandPasteModeListener.
removeDataChangeListener(DataChangeListener) - Method in interface gov.nih.nlm.mms.GUIConfigurable
Removes the specified DataChangeListener.
removeDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Removes a DataChangeListener so that it will no longer be notified every time a OriginalMRMetamorphoSysInputStream.fireDataChanged() call is made from this gui.
removeDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Removes a DataChangeListener so that it will no longer be notified every time a OriginalMRMetamorphoSysOutputStream.fireDataChanged() call is made from this gui.
removeDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Removes a DataChangeListener so that it will no longer be notified every time a RichMRMetamorphoSysInputStream.fireDataChanged() call is made from this gui.
removeDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Removes a DataChangeListener so that it will no longer be notified every time a RichMRMetamorphoSysOutputStream.fireDataChanged() call is made from this gui.
removeDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Removes the specified DataChangeListener.
removeDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Removes the specified DataChangeListener.
removeDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Removes the specified DataChangeListener.
removeDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Removes the specified DataChangeListener.
removeDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Removes the specified DataChangeListener.
removeDataChangeListener(DataChangeListener) - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Method removes a DataChangeListener so that it will no longer be notified every time a AbstractFilter.fireDataChanged() call is made from a filter.
removeDefinition(Definition) - Method in interface gov.nih.nlm.umls.meta.Atom
Remove the specified Definition.
removeDefinition(Definition) - Method in interface gov.nih.nlm.umls.meta.Concept
Remove the specified Definition.
removeDefinition(Definition) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Remove the specified Definition.
removeDefinition(Definition) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Remove the specified Definition.
removeDefinition(Definition) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Remove the specified Definition.
removeDefinition(Definition) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Remove the specified Definition.
removeFocusListener(FocusListener) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Removes a CutandPasteModeListener.
removeLanguageToRemove(Language) - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
This method removes a Language from the data structure that holds the list of languages to be excluded.
removeLinks(String) - Static method in class gov.nih.nlm.util.SystemToolkit
Removes any links within a specified HTML document.
removeLocator(Locator) - Method in interface gov.nih.nlm.umls.meta.Atom
Removes the specified Locator.
removeLocator(Locator) - Method in interface gov.nih.nlm.umls.meta.Concept
Removes the specified Locator.
removeLocator(Locator) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Removes the specified Locator.
removeLocator(Locator) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Removes the specified Locator.
removeLocator(Locator) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Removes the specified Locator.
removeLocator(Locator) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Removes the specified Locator.
removeMTHOnlyConcepts() - Method in interface gov.nih.nlm.mms.MetamorphoSysOutputStream
Indicates whether or not the output stream is configured to remove concepts with only MTH atoms.
removeMTHOnlyConcepts() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Indicates whether or not the output stream is configured to remove concepts with only MTH atoms.
removeMTHOnlyConcepts() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Indicates whether or not the output stream is configured to remove concepts with only MTH atoms.
removeMapping(Mapping) - Method in interface gov.nih.nlm.umls.meta.Concept
Removes the specified Mapping.
removeMapping(Mapping) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Removes the specified Mapping.
removeMapping(Mapping) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Removes the specified Mapping.
removeMetadata(MetaDescription) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Removes the specified MetaDescription.
removeMetadata(MetaDescription) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Removes the specified MetaDescription.
removeProgressListener(ProgressListener) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Removes a ProgressListener.
removeProgressListener(ProgressListener) - Method in interface gov.nih.nlm.util.ProgressReporter
Removes the progress listener.
removeProperty(GUIConfigurable, String) - Method in class gov.nih.nlm.mms.UserConfiguration
Removes the GUIConfigurable-specific property value.
removeProperty(String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Remove a property.
removeQualifier(QualifierFrequency) - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Removes the specified QualifierFrequency.
removeQualifier(QualifierFrequency) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Removes the specified QualifierFrequency.
removeRelationship(Relationship) - Method in interface gov.nih.nlm.umls.meta.Atom
Removes the specified Relationship.
removeRelationship(Relationship) - Method in interface gov.nih.nlm.umls.meta.Concept
Removes the specified Relationship.
removeRelationship(Relationship) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Removes the specified Relationship.
removeRelationship(Relationship) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Removes the specified Relationship and the RelationshipAttributes attached to it.
removeRelationship(Relationship) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Removes the specified Relationship.
removeRelationship(Relationship) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Removes the specified Relationship.
removeRelationshipTypeToRemove(RelType) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method removes a relationship_type from the data structure that holds the list of relationship_types to be excluded.
removeRemovableTermgroup(SourceTermType) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Removes a SourceTermType from the list of removable termgroups.
removeRemovableTermgroup(int) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupListSelectionListener
Deselects row and removes the SourceTermType on that row from the list of removable SourceTermTypes.
removeSelectedAttributes() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method indicates whether the selections represent attributes to be excluded or attributes to be kept.
removeSelectedRelationships() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method indicates whether the selections represent relationship types to be excluded or relationship types to be kept.
removeSelectedSemanticTypes() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
This method indicates whether the selections represent semantic types to be excluded or semantic types to be kept.
removeSelectedSource(Source) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method removes a Source from the data structure that holds the list of selected sources.
removeSelectedSources() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method indicates whether the selections represent sources to be excluded or sources to be kept.
removeSelectedTermgroups() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
This method indicates whether the selections represent source term types to be excluded or source term types to be kept.
removeSemanticType(SemanticType) - Method in interface gov.nih.nlm.umls.meta.Concept
Removes the specified SemanticType.
removeSemanticType(SemanticType) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Removes the specified SemanticType.
removeSemanticType(SemanticType) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Removes the specified SemanticType.
removeSemanticTypeToRemove(HierarchicalSemanticType) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Removes a HierarchicalSemanticType from the data structure that holds the list of semantic_types to be excluded.
removeSourceContext(SourceContext) - Method in interface gov.nih.nlm.umls.meta.StringContext
Removes the specified SourceContext.
removeSourceContext(SourceContext) - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Removes the specified SourceContext.
removeSourceMetaDescription(SourceMetaDescription) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Removes the specified SourceMetaDescription.
removeSourceMetaDescription(SourceMetaDescription) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Removes the specified SourceMetaDescription.
removeSourcePath(String) - Method in class gov.nih.nlm.mms.UserConfiguration
Removes a path from the list of installation sources.
removeSourcesToRemoveListener(SourcesToRemoveListener) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Removes the specfied listener from the list of listeners to be informed when the sources to remove list is changed.
removeStringAttribute(StringAttribute) - Method in interface gov.nih.nlm.umls.meta.TermAttribute
Removes the specified StringAttribute.
removeStringAttribute(StringAttribute) - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Removes the specified StringAttribute.
removeStringContext(StringContext) - Method in interface gov.nih.nlm.umls.meta.ContextGroup
Removes the specified StringContext.
removeStringContext(StringContext) - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Removes the specified StringContext.
removeSuppressibleData() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Indicates whether the Remove Suppressible Data option has been chosen on the Advanced Suppressibility Options panel.
removeSuppressibleTermgroup(SourceTermType) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Removes a SourceTermType from the list of suppressible termgroups.
removeSuppressibleTermgroup(int) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsListSelectionListener
Deselects row and removes the SourceTermType on that row from the list of suppressible SourceTermTypes.
removeTab(GUIConfigurable) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Removes a GUIConfigurable tab from the GUI.
removeTableSortListener(TableSortListener) - Method in class gov.nih.nlm.swing.SortableJTable
Removes the specified TableSortListener
removeTags(String) - Static method in class gov.nih.nlm.util.SystemToolkit
Returns an HTML document stripped of its tags.
removeTermAttribute(TermAttribute) - Method in interface gov.nih.nlm.umls.meta.Term
Removes the specified TermAttribute.
removeTermAttribute(TermAttribute) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Removes the specified TermAttribute.
removeTermVariant(StringInfo) - Method in interface gov.nih.nlm.umls.meta.Term
Removes the specified term variant.
removeTermVariant(StringInfo) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Removes the specified term variant.
removeUnicode() - Method in interface gov.nih.nlm.mms.MetamorphoSysOutputStream
Indicates whether or not the output stream is configured to remove non-ASCII Unicode lines.
removeUnicode() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Indicates whether or not the output stream is configured to remove non-ASCII Unicode lines.
removeUnicode() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Indicates whether or not the output stream is configured to remove non-ASCII Unicode lines.
reorderActiveFilters(int, int) - Method in class gov.nih.nlm.mms.UserConfiguration
Moves the active filter at initial_index to insert it before final_index.
reportError(String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Reports an error message to the user.
reportError(String, boolean) - Static method in class gov.nih.nlm.swing.SwingToolkit
Reports an error message to the user.
reportError(Component, String, boolean) - Static method in class gov.nih.nlm.swing.SwingToolkit
Reports an error message to the user.
reports_manager - Variable in class gov.nih.nlm.mms.browser.ConceptListManager
 
reset() - Method in class gov.nih.nlm.util.MultiplePathReader
Reset the stream to the most recent mark.
resetDataChanged() - Method in interface gov.nih.nlm.mms.GUIConfigurable
Sets the data changed flag to false.
resetDataChanged() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Resets the "has data changed" flag to indicate that no changes have taken place since the last save.
resetDataChanged() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Resets the "has data changed" flag to indicate that no data has been changed since the last save.
resetDataChanged() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Resets the "has data changed" flag to indicate that no data has been changed since the last save.
resetDataChanged() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Resets the data_changed flag to indicate that no data has been changed since the last save.
resetDataChanged() - Method in class gov.nih.nlm.mms.UserConfiguration
Resets the "has data changed" flag to false.
resetDataChanged() - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Sets the data changed flag to false.
resetDataChanged() - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Sets the data changed flag to false.
resetDataChanged() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Method resets the data_changed flag in the filter to indicate that no data has been changed since the last save.
resetSort() - Method in class gov.nih.nlm.swing.SortableJTable
Resets the sorting mechanism to wait until a header is clicked before sorting the table.
resetSort() - Method in class gov.nih.nlm.swing.TableSorter
Resets the sorting mechanism to wait until a header is clicked before sorting the table.
resetTabTitleForFilter(Filter, String) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Changes the title of a tab on the XTabbedPane.
resetTitleForFilter(JPanel, String) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Changes the title of a JPanel with a compound, titled border.
resetToDefaults() - Method in interface gov.nih.nlm.mms.Configurable
Resets the configuration back to default values.
resetToDefaults() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Resets the variables on a tab back to their default values.
resetToDefaults() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Provides a mechanism for resetting the variables on a tab back to their default values.
resetToDefaults() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Resets the state of the input stream to its default state.
resetToDefaults() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Provides a mechanism for resetting the variables on a tab back to their default values.
resetToDefaults() - Method in class gov.nih.nlm.mms.browser.CuiSearchFinder
Resets the configuration back to default values.
resetToDefaults() - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Resets the configuration back to default values.
resetToDefaults() - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Resets the configuration back to default values.
resetToDefaults() - Method in class gov.nih.nlm.mms.browser.TreeBrowserFinder
Resets the configuration back to default values.
resetToDefaults() - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Resets the configuration back to default values.
resetToDefaults() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
Provides functionality for a "Reset To Defaults" Menu item.
resetToDefaults() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
There are no defaults because this filter has nothing to configure.
resetToDefaults() - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Provides functionality for a "Reset To Defaults" Menu item.
resetToDefaults() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Resets filter state to default.
resetToDefaults() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
Method allows the user to reset the filter's settings to defaults.
resetToDefaults() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Resets state to defaults.
resetToDefaults() - Method in class gov.nih.nlm.mms.filters.RxNormFilter
There are no defaults because this filter has nothing to configure.
resetToDefaults() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Resets state to default values.
resetToDefaults() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method allows the user to reset the filter's settings to defaults.
resetToDefaults() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Resets state to defaults.
resizeList(int, int) - Method in class gov.nih.nlm.swing.SuperJList
Resize the list to be within specifications.
reverseMapIndex(int) - Method in class gov.nih.nlm.swing.SortableJTable
Maps a real index from the table model to its current row index in the table.
reverseMapIndex(int) - Method in class gov.nih.nlm.swing.TableSorter
Returns the table row index for the underlying model index.

S

STATE_LOCKED - Static variable in class gov.nih.nlm.swing.FindDialog
 
STATE_UNLOCKED - Static variable in class gov.nih.nlm.swing.FindDialog
 
STYMetaDescription - interface gov.nih.nlm.umls.meta.STYMetaDescription.
Represents metadata about semantic network semantic types.
STYMetaDescriptionImpl - class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl.
Default implementation of the STYMetaDescription interface.
STYMetaDescriptionImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Instantiates an empty STYMetaDescriptionImpl.
STYMetaDescriptionImpl(String) - Constructor for class gov.nih.nlm.umls.meta.impl.STYMetaDescriptionImpl
Instantiates a STYMetaDescription from a row from the SRDEF file.
SUBSET_INDEXES - Static variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
SUBSET_META - Static variable in class gov.nih.nlm.mms.MMSProgressMonitor
 
SaveConfigAction - class gov.nih.nlm.mms.SaveConfigAction.
Saves a config file.
SaveConfigAction(MetamorphoSys, Frame) - Constructor for class gov.nih.nlm.mms.SaveConfigAction
Instantiates a SaveConfigAction.
SaveConfigAction.PropertiesFileFilter - class gov.nih.nlm.mms.SaveConfigAction.PropertiesFileFilter.
FileFilter class for JFileChooser to limit files to .properties file extension.
SaveConfigAction.PropertiesFileFilter() - Constructor for class gov.nih.nlm.mms.SaveConfigAction.PropertiesFileFilter
 
SearchStringPushBackReader - class gov.nih.nlm.umls.io.SearchStringPushBackReader.
Extends PushBackReader to provide the ability to find a single line of input, given a search string or pattern, and to push it back onto the reader to read it again on the next readLine() call.
SearchStringPushBackReader(File, String) - Constructor for class gov.nih.nlm.umls.io.SearchStringPushBackReader
Instantiates a new SearchStringPushBackReader from the specified file and search pattern.
SearchStringPushBackReader(RandomAccessFile, String) - Constructor for class gov.nih.nlm.umls.io.SearchStringPushBackReader
Instantiates a new SearchStringPushBackReader from the specified file and search pattern.
SemanticType - interface gov.nih.nlm.umls.meta.SemanticType.
Represents a Concept semantic type.
SemanticTypeGroup - class gov.nih.nlm.umls.meta.SemanticTypeGroup.
Represents a grouping of SemanticTypes.
SemanticTypeGroup() - Constructor for class gov.nih.nlm.umls.meta.SemanticTypeGroup
Instantiates an empty SemanticTypeGroup.
SemanticTypeImpl - class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl.
Default implementation of the SemanticType interface.
SemanticTypeImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Instantiates an empty SemanticType.
SemanticTypeImpl(SemanticType) - Constructor for class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Instantiates a SemanticType from the specified SemanticType.
SemanticTypesToRemoveFilter - class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter.
This Filter removes all CUIs with a given semantic type
SemanticTypesToRemoveFilter() - Constructor for class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Instantiates a SemanticTypesToRemoveFilter.
SemanticTypesToRemoveJTable - class gov.nih.nlm.mms.filters.SemanticTypesToRemoveJTable.
Provides a table for the Semantic Types To Exclude panel that displays all the Semantic Types and highlights the stys that will be excluded.
SemanticTypesToRemoveJTable(SemanticTypesToRemoveFilter) - Constructor for class gov.nih.nlm.mms.filters.SemanticTypesToRemoveJTable
Instantiates a SemanticTypesToRemoveJTable from the specified SemanticTypesToRemoveFilter.
SemanticTypesToRemoveListSelectionListener - class gov.nih.nlm.mms.filters.SemanticTypesToRemoveListSelectionListener.
List selection listener for the HierarchicalSemanticTypes To Exclude table.
SemanticTypesToRemoveListSelectionListener(SemanticTypesToRemoveFilter, SemanticTypesToRemoveJTable) - Constructor for class gov.nih.nlm.mms.filters.SemanticTypesToRemoveListSelectionListener
Instantiates a SemanticTypesToRemoveListSelectionListener from the specified filter and table.
SemanticTypesToRemoveOptionsGUI - class gov.nih.nlm.mms.filters.SemanticTypesToRemoveOptionsGUI.
Semantic Types To Remove options dialog to set advanced options.
SemanticTypesToRemoveOptionsGUI(SemanticTypesToRemoveFilter) - Constructor for class gov.nih.nlm.mms.filters.SemanticTypesToRemoveOptionsGUI
Creates a modal dialog box and calls method to initialize it.
SemanticTypesToRemoveTableModel - class gov.nih.nlm.mms.filters.SemanticTypesToRemoveTableModel.
Manages and initializes the data for the Semantic Types To Exclude table.
SemanticTypesToRemoveTableModel() - Constructor for class gov.nih.nlm.mms.filters.SemanticTypesToRemoveTableModel
This constructor gets the initial values for the SemanticTypesToRemoveJTable table.
SortButtonRenderer - class gov.nih.nlm.swing.SortButtonRenderer.
TableCellRenderer for use as s column header in a SortableJTable.
SortButtonRenderer() - Constructor for class gov.nih.nlm.swing.SortButtonRenderer
Instantiates a SortButtonRenderer Sets the current icon to BlankIcon until the user chooses to sort a column.
SortableJTable - class gov.nih.nlm.swing.SortableJTable.
JTable that supports sorting of columns.
SortableJTable() - Constructor for class gov.nih.nlm.swing.SortableJTable
Instantiates an empty SortableJTable.
SortableJTable(TableModel) - Constructor for class gov.nih.nlm.swing.SortableJTable
Instantiates a SortableJTable from the specified model.
Source - class gov.nih.nlm.umls.meta.Source.
Represents a UMLS source.
Source() - Constructor for class gov.nih.nlm.umls.meta.Source
Instantiates an empty Source.
SourceContext - interface gov.nih.nlm.umls.meta.SourceContext.
Represents a context associated with a source and a string identifier.
SourceContextImpl - class gov.nih.nlm.umls.meta.impl.SourceContextImpl.
Default implementation fo the SourceContext interface.
SourceContextImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Instantiates an empty SourceContext.
SourceContextImpl(SourceContext) - Constructor for class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Instantiates a SourceContext from the specified SourceContext.
SourceElement - interface gov.nih.nlm.umls.meta.SourceElement.
Represents information about a data element asserted by a Source.
SourceElement.BySourceComparator - class gov.nih.nlm.umls.meta.SourceElement.BySourceComparator.
Sorts the sources.
SourceElement.BySourceComparator() - Constructor for class gov.nih.nlm.umls.meta.SourceElement.BySourceComparator
Instantiates a comparator.
SourceElement.BySourceRestrictor - class gov.nih.nlm.umls.meta.SourceElement.BySourceRestrictor.
 
SourceElement.BySourceRestrictor(Source[]) - Constructor for class gov.nih.nlm.umls.meta.SourceElement.BySourceRestrictor
Constructor Keep only sources given as parameter.
SourceIdentifierElement - interface gov.nih.nlm.umls.meta.SourceIdentifierElement.
Represents information about a data element connected to a SourceIdentifierType.
SourceIdentifierType - class gov.nih.nlm.umls.meta.SourceIdentifierType.
Represents information about a the type of a MapObject's expression.
SourceIdentifierType() - Constructor for class gov.nih.nlm.umls.meta.SourceIdentifierType
Instantiates an empty SourceIdentifierType.
SourceMetaDescription - interface gov.nih.nlm.umls.meta.SourceMetaDescription.
Represents information about a UMLS source.
SourceMetaDescriptionImpl - class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl.
Default implementation of the SourceMetaDescription interface.
SourceMetaDescriptionImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Instantiates an empty SourceMetaDescriptionImpl.
SourceMetaDescriptionImpl(String) - Constructor for class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Instantiates the SourceMetaDescription with the fields from a MRSAB row.
SourceTermType - class gov.nih.nlm.umls.meta.SourceTermType.
Represents a tuple consisting of a Source and a TermType.
SourceTermType() - Constructor for class gov.nih.nlm.umls.meta.SourceTermType
Instantiate an empty SourceTermType.
SourcesToRemoveEvent - class gov.nih.nlm.mms.SourcesToRemoveEvent.
Represents a change in the list of sources to remove.
SourcesToRemoveEvent(Object, List) - Constructor for class gov.nih.nlm.mms.SourcesToRemoveEvent
Instantiates a SourcesToRemoveEvent.
SourcesToRemoveFilter - class gov.nih.nlm.mms.filters.SourcesToRemoveFilter.
This Filter removes all CUIs that are from sources chosen to be excluded from the subset.
SourcesToRemoveFilter() - Constructor for class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Instantiates an empty SourcesToRemoveFilter.
SourcesToRemoveJTable - class gov.nih.nlm.mms.filters.SourcesToRemoveJTable.
Provides a table for the Sources To Exclude panel that displays all the sources and highlights the sources that will be excluded.
SourcesToRemoveJTable(ApplicationConfiguration, SourcesToRemoveFilter) - Constructor for class gov.nih.nlm.mms.filters.SourcesToRemoveJTable
This constructor takes a default ApplicationConfiguration and a SourcesToRemoveFilter.
SourcesToRemoveListSelectionListener - class gov.nih.nlm.mms.filters.SourcesToRemoveListSelectionListener.
List selection listener for the Sources To Exclude table.
SourcesToRemoveListSelectionListener(SourcesToRemoveFilter, SourcesToRemoveJTable) - Constructor for class gov.nih.nlm.mms.filters.SourcesToRemoveListSelectionListener
Constructor - sets variables from parameters.
SourcesToRemoveListener - interface gov.nih.nlm.mms.SourcesToRemoveListener.
Generically represents a listener for events pertaining to changes in the list of sources to remove.
SourcesToRemoveOptionsGUI - class gov.nih.nlm.mms.filters.SourcesToRemoveOptionsGUI.
Sources To Remove options dialog box for user to set advanced options.
SourcesToRemoveOptionsGUI(SourcesToRemoveFilter) - Constructor for class gov.nih.nlm.mms.filters.SourcesToRemoveOptionsGUI
Default constructor.
SourcesToRemoveOptionsGUI.DataChangeListener - class gov.nih.nlm.mms.filters.SourcesToRemoveOptionsGUI.DataChangeListener.
 
SourcesToRemoveOptionsGUI.DataChangeListener() - Constructor for class gov.nih.nlm.mms.filters.SourcesToRemoveOptionsGUI.DataChangeListener
 
SourcesToRemoveTableModel - class gov.nih.nlm.mms.filters.SourcesToRemoveTableModel.
Stores and initializes the data for the Sources To Exclude table.
SourcesToRemoveTableModel(ApplicationConfiguration) - Constructor for class gov.nih.nlm.mms.filters.SourcesToRemoveTableModel
This constructor gets the initial values for the sources table.
StringAttribute - interface gov.nih.nlm.umls.meta.StringAttribute.
Represents information about attributes shared at the level of a string identifier.
StringAttributeImpl - class gov.nih.nlm.umls.meta.impl.StringAttributeImpl.
Default implementation of the StringAttribute interface.
StringAttributeImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Instantiates an empty StringAttribute.
StringAttributeImpl(StringAttribute) - Constructor for class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Instantiates a StringAttribute from the specified StringAttribute.
StringContext - interface gov.nih.nlm.umls.meta.StringContext.
Represents grouping of SourceContexts which share the same Source abbreviation and code.
StringContextImpl - class gov.nih.nlm.umls.meta.impl.StringContextImpl.
Default implementation of the StringContext interface.
StringContextImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.StringContextImpl
Instantiates an empty StringContext.
StringContextImpl(StringContext) - Constructor for class gov.nih.nlm.umls.meta.impl.StringContextImpl
Instantiates a StringContext from the specified StringContext.
StringFieldComparator - class gov.nih.nlm.util.StringFieldComparator.
Used to compare string field objects.
StringFieldComparator(String, int) - Constructor for class gov.nih.nlm.util.StringFieldComparator
Instantiates a comparator for the specified parameters.
StringFieldComparator(String, int, boolean) - Constructor for class gov.nih.nlm.util.StringFieldComparator
Instantiates a comparator for the specified parameters.
StringInfo - interface gov.nih.nlm.umls.meta.StringInfo.
Represents string information for a Term.
StringInfoImpl - class gov.nih.nlm.umls.meta.impl.StringInfoImpl.
Default implementation of the StringInfo interface.
StringInfoImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Instantiates an empty StringInfo.
StringInfoImpl(StringInfo) - Constructor for class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Instantiates a StringInfo from the specified StringInfo.
StringType - class gov.nih.nlm.umls.meta.StringType.
Represents an string type.
StringType() - Constructor for class gov.nih.nlm.umls.meta.StringType
Instantiates an empty StringType.
StringValueOf(String) - Static method in class gov.nih.nlm.util.ObjectXMLSerializer
The String classes do not have a valueOf(String) method, this method takes its place in reconstructing primitive values.
SubsetGUI - class gov.nih.nlm.mms.SubsetGUI.
This dialog is used to choose the configuration options.
SubsetGUI(MetamorphoSys) - Constructor for class gov.nih.nlm.mms.SubsetGUI
Instantiates the GUI.
SubsetListener - interface gov.nih.nlm.mms.SubsetListener.
Generically represents a listener interested in different phases of the subsetting process.
SuiCountIndexBuilder - class gov.nih.nlm.umls.io.SuiCountIndexBuilder.
 
SuiCountIndexBuilder(String) - Constructor for class gov.nih.nlm.umls.io.SuiCountIndexBuilder
Instantiates a SuiCountIndexBuilder.
SuperJList - class gov.nih.nlm.swing.SuperJList.
JList with a key listener and other extras.
SuperJList() - Constructor for class gov.nih.nlm.swing.SuperJList
Instantiates an empty SuperJList.
SuperJList(Object[]) - Constructor for class gov.nih.nlm.swing.SuperJList
Instantiates a SuperJList from the specified data.
Suppressible - class gov.nih.nlm.umls.meta.Suppressible.
Represents a suppressible value.
Suppressible() - Constructor for class gov.nih.nlm.umls.meta.Suppressible
Instantiates an empty Suppressible.
SuppressibleElement - interface gov.nih.nlm.umls.meta.SuppressibleElement.
Represents a data element that can be suppressed.
SuppressibleTermgroupsFilter - class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter.
Computes which content is suppressible and (optionally) removes it.
SuppressibleTermgroupsFilter() - Constructor for class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Instantiates an empty SuppressibleTermgroupsFilter.
SuppressibleTermgroupsListSelectionListener - class gov.nih.nlm.mms.filters.SuppressibleTermgroupsListSelectionListener.
List selection listener for the suppressible term types table.
SuppressibleTermgroupsListSelectionListener(SuppressibleTermgroupsFilter, SortableJTable) - Constructor for class gov.nih.nlm.mms.filters.SuppressibleTermgroupsListSelectionListener
Instantiates a SuppressibleTermgroupsListSelectionListener with the specified SuppressibleTermgroupsFilter and SortableJTable.
SuppressibleTermgroupsOptionsGUI - class gov.nih.nlm.mms.filters.SuppressibleTermgroupsOptionsGUI.
Suppressiblity Options GUI.
SuppressibleTermgroupsOptionsGUI(SuppressibleTermgroupsFilter) - Constructor for class gov.nih.nlm.mms.filters.SuppressibleTermgroupsOptionsGUI
Instantiates a SuppressibleTermgroupsOptionsGUI connected to the specified SuppressibleTermgroupsFilter.
SwingConstants - interface gov.nih.nlm.swing.SwingConstants.
Contains constants used by SwingToolkit.
SwingToolkit - class gov.nih.nlm.swing.SwingToolkit.
GUI utility class.
SwingToolkit() - Constructor for class gov.nih.nlm.swing.SwingToolkit
 
SystemToolkit - class gov.nih.nlm.util.SystemToolkit.
Utility toolkit.
SystemToolkit() - Constructor for class gov.nih.nlm.util.SystemToolkit
 
saui - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
save(File) - Static method in class gov.nih.nlm.mms.browser.BrowserState
Saves the BrowserState to the given File.
saveConfig() - Method in class gov.nih.nlm.mms.SaveConfigAction
Helper method for saving the configuration.
saveState(File) - Method in class gov.nih.nlm.mms.UserConfiguration
Saves the configuration properties to the specified File.
scale - Variable in class gov.nih.nlm.util.PrintPreviewAction
 
scale_box - Variable in class gov.nih.nlm.util.PrintPreviewAction
 
scale_width_to_fit - Variable in class gov.nih.nlm.util.HTMLDocumentRenderer
 
scale_width_to_fit - Variable in class gov.nih.nlm.util.JComponentPrintHandler
 
scaling_factor - Variable in class gov.nih.nlm.util.HTMLDocumentRenderer
 
scaling_factor - Variable in class gov.nih.nlm.util.JComponentPrintHandler
 
scui - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
sdui - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
search_pattern - Variable in class gov.nih.nlm.umls.io.SearchStringPushBackReader
 
seekstr(RandomAccessFile, String, String) - Static method in class gov.nih.nlm.util.SystemToolkit
Seek to the location in the RandomAccessFile where the first line of text starts with the search string.
selectAll() - Method in class gov.nih.nlm.swing.SuperJList
Selects all elements of the list.
selectTabForFilter(GUIConfigurable) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Programatically selects the tab in the tabbed pane corresponding to the specified GUIConfigurable.
selected_default_subset - Variable in class gov.nih.nlm.mms.UserConfiguration
 
selected_page_index - Variable in class gov.nih.nlm.util.PrintPreviewAction
 
semantic_types - Variable in class gov.nih.nlm.umls.meta.impl.ConceptImpl
 
setAdditionalRelationshipLabel(AdditionalRelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets the AdditionalRelationshipLabel (RELA).
setAdditionalRelationshipLabel(AdditionalRelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Sets the AdditionalRelationshipLabel (RELA).
setAdditionalRelationshipLabel(AdditionalRelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.Context
Sets the AdditionalRelationshipLabel (RELA) from the context member to its parent.
setAdditionalRelationshipLabel(AdditionalRelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.ContextMember
Sets the AdditionalRelationshipLabel (RELA) from the context member to its parent.
setAdditionalRelationshipLabel(AdditionalRelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the AdditionalRelationshipLabel (RELA).
setAdditionalRelationshipLabel(AdditionalRelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.Relationship
Sets the AdditionalRelationshipLabel (RELA).
setAdditionalRelationshipLabel(AdditionalRelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Sets the AdditionalRelationshipLabel (RELA).
setAdditionalRelationshipLabel(AdditionalRelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Sets the AdditionalRelationshipLabel (RELA).
setAdditionalRelationshipLabel(AdditionalRelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Sets the AdditionalRelationshipLabel (RELA) from the context member to its parent.
setAdditionalRelationshipLabel(AdditionalRelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Sets the AdditionalRelationshipLabel (RELA) from the context member to its parent.
setAdditionalRelationshipLabel(AdditionalRelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the AdditionalRelationshipLabel (RELA).
setAdditionalRelationshipLabel(AdditionalRelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the AdditionalRelationshipLabel (RELA).
setAdditionalSuffix(String) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
Sets an additional suffix.
setAllColumnStatistics(ColumnStatistics[]) - Method in class gov.nih.nlm.util.FileStatistics
Sets all of the ColumnStatistics.
setAnySty(boolean) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Sets whether any or all of a concepts semantic types must be on the removal list for the concept to be removed.
setApplicationConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.MetamorphoSys
Sets the ApplicationConfiguration.
setAtn(AttributeName) - Method in interface gov.nih.nlm.umls.meta.Attribute
Sets the AttributeName (ATN).
setAtn(AttributeName) - Method in interface gov.nih.nlm.umls.meta.AttributeValue
Sets the AttributeName (ATN).
setAtn(AttributeName) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Shorthand for AttributeImpl.setAttributeName(AttributeName).
setAtn(AttributeName) - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Shorthand for AttributeValueImpl.setAttributeName(AttributeName).
setAtom(Atom) - Method in interface gov.nih.nlm.umls.meta.AtomElement
Sets the Atom to which this element is connected.
setAtom(Atom) - Method in interface gov.nih.nlm.umls.meta.AttributeContext
Sets the Atom for this AttributeContext.
setAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.AtomAttributeImpl
Sets the Atom this AtomAttribute is connected to.
setAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.AtomCoocurrenceImpl
Sets the Atom this AtomCoocurrence is connected to.
setAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.AtomRelationshipImpl
Sets the Atom this Relationship is connected to.
setAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Sets the Atom for this AttributeContext.
setAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Sets the Atom this Context is connected to.
setAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Sets the Atom this CoocurrenceGroup is connected to.
setAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Sets the Atom related to this Definition.
setAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Sets the Atom related to this Locator.
setAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the Atom this Relationship is connected to.
setAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Sets the Atom this SourceContext is connected to.
setAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Sets the source for this StringContext.
setAtomComparator(Comparator) - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Sets the Comparator that will be used to sort the Atoms.
setAtomIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the atom unique identifier (AUI).
setAtomIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets atom identifier for the first atom (AUI1).
setAtomIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Sets the atom identifier for the first atom (AUI1).
setAtomIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the atom unique identifier (AUI) related to this Atom.
setAtomMappings(AtomMapping[]) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Sets the AtomMappings.
setAtomMappings(List) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Sets the AtomMappings.
setAtomMappings(AtomMapping[]) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Sets the AtomMappings.
setAtomMappings(List) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Sets the AtomMappings.
setAtoms(Atom[]) - Method in class gov.nih.nlm.umls.meta.Atom.AtomRankComparator
This method initializes the comparator with a new Concept.
setAtoms(Atom[]) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace any Atoms with the ones in the specified array.
setAtoms(List) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Atoms with the ones in the specified List.
setAtoms(Atom[]) - Method in interface gov.nih.nlm.umls.meta.StringInfo
Replaces the Atoms with those in the specified array.
setAtoms(List) - Method in interface gov.nih.nlm.umls.meta.StringInfo
Replaces the Atoms with those in the specified List
setAtoms(Atom[]) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace any Atoms with the ones in the specified array.
setAtoms(List) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Atoms with the ones in the apecified List.
setAtoms(Atom[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace any Atoms with the ones in the specified array.
setAtoms(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Atoms with the ones in the specified List.
setAtoms(Atom[]) - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Replaces the Atoms with those in the specified array.
setAtoms(List) - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Replaces the Atoms with those in the specified List
setAttributeContexts(AttributeContext[]) - Method in interface gov.nih.nlm.umls.meta.StringAttribute
Replaces the AttributeContexts with the ones in the specified array.
setAttributeContexts(List) - Method in interface gov.nih.nlm.umls.meta.StringAttribute
Replaces the AttributeContexts with the ones in the specified List.
setAttributeContexts(AttributeContext[]) - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Replaces the AttributeContexts with the ones in the specified array.
setAttributeContexts(List) - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Replaces the AttributeContexts with the ones in the specified List.
setAttributeIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.AttributeElement
Sets the unique identifier (ATUI).
setAttributeIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.SemanticType
Sets the unique identifier (ATUI).
setAttributeIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Sets the unique identifier (ATUI).
setAttributeIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Sets the unique identifier (ATUI).
setAttributeIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Sets the unique identifier (ATUI).
setAttributeIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Sets the unique identifier (ATUI).
setAttributeIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Sets the unique identifier (ATUI).
setAttributeName(AttributeName) - Method in interface gov.nih.nlm.umls.meta.Attribute
Sets the AttributeName (ATN).
setAttributeName(AttributeName) - Method in interface gov.nih.nlm.umls.meta.AttributeValue
Sets the AttributeName (ATN).
setAttributeName(AttributeName) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the AttributeName (MAPATN).
setAttributeName(AttributeName) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Sets the AttributeName (ATN).
setAttributeName(AttributeName) - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Sets the AttributeName (ATN).
setAttributeName(AttributeName) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the AttributeName (MAPATN).
setAttributeTypesToRemove(List) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method replaces the List of AttTypes to be removed with the one provided.
setAttributeValue(String) - Method in interface gov.nih.nlm.umls.meta.Attribute
Sets the attribute value (ATV).
setAttributeValue(String) - Method in interface gov.nih.nlm.umls.meta.AttributeValue
Sets the attribute value (ATV).
setAttributeValue(String) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the attribute value (MAPATV).
setAttributeValue(String) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Sets the attribute value (ATV).
setAttributeValue(String) - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Sets the attribute value (ATV).
setAttributeValue(String) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the attribute value (MAPATV).
setAttributeValues(AttributeValue[]) - Method in interface gov.nih.nlm.umls.meta.AttributeContext
Replaces the AttributeValues with the ones in the specified array.
setAttributeValues(List) - Method in interface gov.nih.nlm.umls.meta.AttributeContext
Replaces the AttributeValues with the ones in the specified List.
setAttributeValues(AttributeValue[]) - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Replaces the AttributeValues with the ones in the specified array.
setAttributeValues(List) - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Replaces the AttributeValues with the ones in the specified List.
setAttributes(AtomAttribute[]) - Method in interface gov.nih.nlm.umls.meta.Atom
Replace AtomAttributes with the ones in the specified array.
setAttributes(List) - Method in interface gov.nih.nlm.umls.meta.Atom
Replace AtomAttributes with the ones in the specified List.
setAttributes(Attribute[]) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Attributes with the ones in the specified array.
setAttributes(List) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Attributes with the ones in the specified List.
setAttributes(RelationshipAttribute[]) - Method in interface gov.nih.nlm.umls.meta.Relationship
Replace RelationshipAttributes with the ones in the specified array.
setAttributes(List) - Method in interface gov.nih.nlm.umls.meta.Relationship
Replace RelationshipAttributes with the ones in the specified List.
setAttributes(AtomAttribute[]) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Replace AtomAttributes with the ones in the specified array.
setAttributes(List) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Replace AtomAttributes with the ones in the specified List.
setAttributes(Attribute[]) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Attributes with the ones in the specified array.
setAttributes(List) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Attributes with the ones in the specified List.
setAttributes(AtomAttribute[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Replace AtomAttributes with the ones in the specified array.
setAttributes(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Replace AtomAttributes with the ones in the specified List.
setAttributes(Attribute[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Attributes with the ones in the specified array.
setAttributes(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Attributes with the ones in the specified List.
setAttributes(RelationshipAttribute[]) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Replace RelationshipAttributes with the ones in the specified array.
setAttributes(List) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Replace RelationshipAttributes with the ones in the specified List.
setAtui(String) - Method in interface gov.nih.nlm.umls.meta.AttributeElement
Sets the unique identifier (ATUI).
setAtui(String) - Method in interface gov.nih.nlm.umls.meta.SemanticType
Sets the unique identifier (ATUI).
setAtui(String) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Shorthand for AttributeImpl.setAttributeIdentifier(String).
setAtui(String) - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Shorthand for AttributeValueImpl.setAttributeIdentifier(String).
setAtui(String) - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Shorthand for DefinitionImpl.setAttributeIdentifier(String).
setAtui(String) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.setAttributeIdentifier(String).
setAtui(String) - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Shorthand for SemanticTypeImpl.setAttributeIdentifier(String).
setAtv(String) - Method in interface gov.nih.nlm.umls.meta.Attribute
Sets the attribute value.
setAtv(String) - Method in interface gov.nih.nlm.umls.meta.AttributeValue
Sets the attribute value (ATV).
setAtv(String) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Shorthand for AttributeImpl.setAttributeValue(String).
setAtv(String) - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Shorthand for AttributeValueImpl.setAttributeValue(String).
setAui(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Shorthand for Atom.setAtomIdentifier(String).
setAui(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.setAtomIdentifier(String).
setAui1(String) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets atom identifier for the first atom (AUI1).
setAui1(String) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Shorthand for AtomMappingImpl.setAtomIdentifier(String).
setAui2(String) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets atom identifier for the second atom (AUI2).
setAui2(String) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Shorthand for AtomMappingImpl.setRelatedAtomIdentifier(String).
setAutomaticSelection(boolean) - Method in class gov.nih.nlm.mms.UserConfiguration
Sets the "automatic selection mode" flag.
setAverageLength(double) - Method in class gov.nih.nlm.util.ColumnStatistics
Sets the average length of column
setByteCount(long) - Method in class gov.nih.nlm.util.FileStatistics
Sets the byte count.
setCandidateAmbiguousStringIdentifiers(String[]) - Method in interface gov.nih.nlm.umls.io.MetathesaurusOutputStream
Sets the list of suis that are candidates to be ambiguous.
setCandidateAmbiguousStringIdentifiers(List) - Method in interface gov.nih.nlm.umls.io.MetathesaurusOutputStream
Sets the list of suis that are candidates to be ambiguous.
setCandidateAmbiguousStringIdentifiers(String[]) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Sets the list of suis that are candidates to be ambiguous.
setCandidateAmbiguousStringIdentifiers(List) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Sets the list of suis that are candidates to be ambiguous.
setCandidateAmbiguousStringIdentifiers(String[]) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Sets the list of suis that are candidates to be ambiguous.
setCandidateAmbiguousStringIdentifiers(List) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Sets the list of suis that are candidates to be ambiguous.
setCandidateAmbiguousTermIdentifiers(String[]) - Method in interface gov.nih.nlm.umls.io.MetathesaurusOutputStream
Sets the list of terms that are candidates to be ambiguous.
setCandidateAmbiguousTermIdentifiers(List) - Method in interface gov.nih.nlm.umls.io.MetathesaurusOutputStream
Sets the list of terms that are candidates to be ambiguous.
setCandidateAmbiguousTermIdentifiers(String[]) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Sets the list of terms that are candidates to be ambiguous.
setCandidateAmbiguousTermIdentifiers(List) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Sets the list of luis that are candidates to be ambiguous.
setCandidateAmbiguousTermIdentifiers(String[]) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Sets the list of terms that are candidates to be ambiguous.
setCandidateAmbiguousTermIdentifiers(List) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Sets the list of terms that are candidates to be ambiguous.
setChangeKey(String) - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Sets the change key to identify what changed (CHANGEKEY).
setChangeKey(String) - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Sets the change key to identify what changed (CHANGEKEY).
setChangeType(String) - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Sets the change type to identify what changed (CHANGETYPE).
setChangeType(String) - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Sets the change type to identify what changed (CHANGETYPE).
setChangeValue(String) - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Sets the new value for what changed (CHANGEVALUE).
setChangeValue(String) - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Sets the new value for what changed (CHANGEVALUE).
setCharSet(String) - Method in class gov.nih.nlm.umls.io.SearchStringPushBackReader
Sets the character set to the given parameter.
setCharsEqualsBytes(boolean) - Method in class gov.nih.nlm.util.FileStatistics
Sets a flag which indicates if the character encoding is one byte per character or not.
setCoa(String) - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Sets the coocurrence attribute value (COA).
setCoa(String) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Shorthand for CoocurrenceImpl.setCoocurrenceAttribute(String).
setCode(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the code (CODE).
setCode(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the code (CODE).
setCof(int) - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Sets the coocurrence frequency (COF).
setCof(int) - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Sets the CoocurrenceContext frequency (COF).
setCof(int) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Shorthand for CoocurrenceContextImpl.setCoocurrenceContextFrequency(int).
setCof(int) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Shorthand for CoocurrenceImpl.setCoocurrenceFrequency(int).
setColumnName(String) - Method in class gov.nih.nlm.util.ColumnStatistics
Sets the column name.
setComparator(Comparator) - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Sets the Comparator thtat will be used for sorting the word search results.
setComparator(Comparator) - Method in class gov.nih.nlm.umls.meta.ChainRestrictor
Sets the Comparator to be used for the sort order.
setComponentHistories(ComponentHistory[]) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace ComponentHistorys with the ones in the specified array.
setComponentHistories(List) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace ComponentHistorys with the ones in the specified List.
setComponentHistories(ComponentHistory[]) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace ComponentHistorys with the ones in the specified array.
setComponentHistories(List) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace ComponentHistorys with the ones in the specified List.
setComponentHistories(ComponentHistory[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace ComponentHistorys with the ones in the specified array.
setComponentHistories(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace ComponentHistorys with the ones in the specified List.
setConcept(Concept) - Method in interface gov.nih.nlm.mms.browser.ConceptView
Sets the Concept to be displayed.
setConcept(Concept) - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Sets the Concept to be displayed.
setConcept(Concept) - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Sets the Concept to be displayed.
setConcept(Concept) - Method in class gov.nih.nlm.mms.browser.ReportsManager
Sets a Concept for display in the ReportsManager's chosen ContentView panel.
setConcept(Concept) - Method in interface gov.nih.nlm.umls.meta.ConceptElement
Sets the Concept that holds this ConceptElement.
setConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Sets the Concept that holds this Attribute.
setConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Sets the Concept that holds this ComponentHistory.
setConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Sets the Concept that holds this ContextGroup.
setConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Sets the Concept that holds this Context
setConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Sets the Concept that holds this CoocurrenceGroup.
setConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Sets the Concept that holds this Coocurrence.
setConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Sets the Concept that holds this Definition.
setConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Sets the Concept that holds this Locator.
setConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the Concept that holds this Mapping (CUI).
setConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the Concept that holds this Atom.
setConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the Concept that holds this Relationship.
setConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Sets the Concept that holds this SemanticType.
setConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Sets the Concept that holds this TermAttribute.
setConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Sets the Concept that holds this Term.
setConceptIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets concept identifier for the first atom (CUI1).
setConceptIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Concept
Sets the concept unique identifier (CUI) for the Concept.
setConceptIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Sets concept identifier for the first concept (CUI1).
setConceptIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Sets the CUI.
setConceptIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Sets the concept identifier for the first atom (CUI1).
setConceptIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Sets the concept unique identifier (CUI) for the Concept that holds this Concept.
setConceptIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Sets the concept identifier for the first concept (CUI1).
setConceptIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Sets the CUI.
setConceptIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Sets the concept unique identifier (CUI) for the Concept that holds this Concept.
setConceptList(ConceptList) - Method in class gov.nih.nlm.mms.browser.ConceptListManager
Sets the ConceptList.
setConceptListManager(ConceptListManager) - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Sets the ConceptListManager.
setConceptListManager(ConceptListManager) - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Returns the ConceptListManager.
setConceptListManager(ConceptListManager) - Method in interface gov.nih.nlm.mms.browser.ConceptView
Sets the ConceptListManager.
setConceptListManager(ConceptListManager) - Method in interface gov.nih.nlm.mms.browser.Finder
Sets the ConceptListManager.
setConceptListManager(ConceptListManager) - Method in class gov.nih.nlm.mms.browser.FinderManager
Sets the ConceptListManager for the RRFBrowserGUI.
setConceptListManager(ConceptListManager) - Method in class gov.nih.nlm.mms.browser.ReportsManager
Sets the ConceptListManager.
setConceptMappings(ConceptMapping[]) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Sets the ConceptMappings.
setConceptMappings(List) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Sets the ConceptMappings.
setConceptMappings(ConceptMapping[]) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Sets the ConceptMappings.
setConceptMappings(List) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Sets the ConceptMappings.
setConfigDirectory(String) - Method in class gov.nih.nlm.mms.ApplicationConfiguration
Sets the path to the configuration directory.
setConfiguration(UserConfiguration) - Method in interface gov.nih.nlm.mms.ConceptInputStream
Sets the UserConfiguration.
setConfiguration(UserConfiguration) - Method in interface gov.nih.nlm.mms.ConceptOutputStream
Sets the UserConfiguration.
setConfiguration(ApplicationConfiguration) - Method in interface gov.nih.nlm.mms.Configurable
Method provides the filter with values from the default configuration file.
setConfiguration(UserConfiguration) - Method in interface gov.nih.nlm.mms.Configurable
Method provides the filter with values from the user configuration file.
setConfiguration(UserConfiguration) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Sets the UserConfiguration.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Sets the ApplicationConfiguration used for the default settings.
setConfiguration(UserConfiguration) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Sets the UserConfiguration.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Sets the ApplicationConfiguration used for default settings.
setConfiguration(UserConfiguration) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Sets the UserConfiguration.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Sets the ApplicationConfiguration representing the default state.
setConfiguration(UserConfiguration) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Sets the UserConfiguration.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Sets the ApplicationConfiguration.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Method provides the filter with values from the default configuration file.
setConfiguration(UserConfiguration) - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Method provides the filter with values from the user configuration file.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Method provides the filter with values from the default configuration file.
setConfiguration(UserConfiguration) - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Method provides the filter with values from the user configuration file.
setConfiguration(UserConfiguration) - Method in class gov.nih.nlm.mms.browser.ConceptListManager
Method provides the filter with values from the user configuration file.
setConfiguration(UserConfiguration) - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Method provides the filter with values from the user configuration file.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Method provides the filter with values from the default configuration file.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
Method provides the filter with values from the default properties file.
setConfiguration(UserConfiguration) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
Method provides the filter with values from the user configuration file.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Gives the filter access to the default configuration object.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Method provides the filter with values from the default properties file.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Sets the ApplicationConfiguration.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
Method provides the filter with values from the default properties file.
setConfiguration(UserConfiguration) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
Method provides the filter with values from the user configuration file.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Sets the ApplicationConfiguration.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.filters.RxNormFilter
Gives the filter access to the default configuration object.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method provides the filter with values from the default properties file.
setConfiguration(UserConfiguration) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method provides the filter with values from the user configuration file.
setConfiguration(ApplicationConfiguration) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Sets the ApplicationConfiguration.
setConfigurationFilename(String) - Method in class gov.nih.nlm.mms.DefaultSubset
Sets the name of the configuration file to use.
setContentType(String) - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Sets the content type the JEditorPane.
setContentView(ContentView) - Method in interface gov.nih.nlm.umls.meta.ContentViewElement
Sets tbe ContentView definition for this ConceptElement (CVF).
setContentView(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Sets tbe ContentView definition for this Attribute (CVF).
setContentView(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Sets tbe ContentView definition for this AttributeValue (CVF).
setContentView(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Sets tbe ContentView definition for this Locator (CVF).
setContentView(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Sets tbe ContentView definition for this Context (CVF).
setContentView(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Sets tbe ContentView definition for this CoocurrenceContext (CVF).
setContentView(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Sets tbe ContentView definition for this Coocurrence (CVF).
setContentView(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Sets tbe ContentView definition for this Definition (CVF).
setContentView(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Sets tbe ContentView definition for this Locator (CVF).
setContentView(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets tbe ContentView definition for this Mapping (CVF).
setContentView(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets tbe ContentView definition for this Atom (CVF).
setContentView(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets tbe ContentView definition for this Relationship (CVF).
setContentView(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Sets tbe ContentView definition for this SemanticType (CVF).
setContentView(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Sets tbe ContentView definition for this SourceContext (CVF).
setContextGroup(ContextGroup) - Method in interface gov.nih.nlm.umls.meta.StringContext
Sets the ContextGroup that holds this StringContext.
setContextGroup(ContextGroup) - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Sets the ContextGroup that holds this StringContext.
setContextMembers(ContextMember[]) - Method in interface gov.nih.nlm.umls.meta.Context
Replaces the ContextMembers with the ones in the specified array.
setContextMembers(List) - Method in interface gov.nih.nlm.umls.meta.Context
Replaces the ContextMembers with the ones in the specified List.
setContextMembers(ContextMember[]) - Method in interface gov.nih.nlm.umls.meta.SourceContext
Set the ContextMembers with the ones in the specified array.
setContextMembers(List) - Method in interface gov.nih.nlm.umls.meta.SourceContext
Set the ContextMembers with the ones in the specified List.
setContextMembers(ContextMember[]) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Replaces the ContextMembers with the ones in the specified array.
setContextMembers(List) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Replaces the ContextMembers with the ones in the specified List.
setContextMembers(ContextMember[]) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Set the ContextMembers with the ones in the specified array.
setContextMembers(List) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Set the ContextMembers with the ones in the specified List.
setContextNumber(int) - Method in interface gov.nih.nlm.umls.meta.Context
Sets the context number (CXN).
setContextNumber(int) - Method in interface gov.nih.nlm.umls.meta.SourceContext
Sets the context number (CXN).
setContextNumber(int) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Sets the context number (CXN).
setContextNumber(int) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Sets the context number (CXN).
setContexts(Context[]) - Method in interface gov.nih.nlm.umls.meta.Atom
Replace Contexts with the ones in the specified array.
setContexts(List) - Method in interface gov.nih.nlm.umls.meta.Atom
Replace Contexts with the ones in the specified List.
setContexts(Context[]) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Contexts with the ones in the specified array.
setContexts(List) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Contexts with the ones in the specified List.
setContexts(Context[]) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Replace Contexts with the ones in the specified array.
setContexts(List) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Replace Contexts with the ones in the specified List.
setContexts(Context[]) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Contexts with the ones in the specified array.
setContexts(List) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Contexts with the ones in the specified List.
setContexts(Context[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Replace Contexts with the ones in the specified array.
setContexts(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Replace Contexts with the ones in the specified List.
setContexts(Context[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Contexts with the ones in the specified array.
setContexts(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Contexts with the ones in the specified List.
setCoocurrenceAttribute(String) - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Sets the coocurrence attribute value (COA).
setCoocurrenceAttribute(String) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Sets the coocurrence attribute value (COA).
setCoocurrenceContextFrequency(int) - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Sets the CoocurrenceContext frequency (COF).
setCoocurrenceContextFrequency(int) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Sets the CoocurrenceContext frequency (COF).
setCoocurrenceContexts(String) - Method in interface gov.nih.nlm.umls.meta.CoocurrenceGroup
Sets the coocurrence attribute value.
setCoocurrenceContexts(CoocurrenceContext[]) - Method in interface gov.nih.nlm.umls.meta.CoocurrenceGroup
Replaces the CoocurrenceContexts with those in the specified array.
setCoocurrenceContexts(List) - Method in interface gov.nih.nlm.umls.meta.CoocurrenceGroup
Replaces the CoocurrenceContexts with those in the specified List
setCoocurrenceContexts(String) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Sets the coocurrence attribute value.
setCoocurrenceContexts(CoocurrenceContext[]) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Replaces the CoocurrenceContexts with those in the specified array.
setCoocurrenceContexts(List) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Replaces the CoocurrenceContexts with those in the specified List
setCoocurrenceFrequency(int) - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Sets the coocurrence frequency (COF).
setCoocurrenceFrequency(int) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Sets the coocurrence frequency (COF).
setCoocurrenceGroup(CoocurrenceGroup) - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Sets the CoocurrenceGroup that holds this CoocurrenceContext.
setCoocurrenceGroup(CoocurrenceGroup) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Sets the CoocurrenceGroup that holds this CoocurrenceContext.
setCoocurrenceType(CoocurrenceType) - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Sets the CoocurrenceType (COT).
setCoocurrenceType(CoocurrenceType) - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Sets the CoocurrenceType (COT).
setCoocurrenceType(CoocurrenceType) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Sets the CoocurrenceType (COT).
setCoocurrenceType(CoocurrenceType) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Sets the CoocurrenceType (COT).
setCoocurrences(Coocurrence[]) - Method in interface gov.nih.nlm.umls.meta.Atom
Replace Coocurrences with the ones in the specified array.
setCoocurrences(List) - Method in interface gov.nih.nlm.umls.meta.Atom
Replace Coocurrences with the ones in the specified List.
setCoocurrences(Coocurrence[]) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Coocurrences with the ones in the specified array.
setCoocurrences(List) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Coocurrences with the ones in the specified List.
setCoocurrences(Coocurrence[]) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Replace Coocurrences with the ones in the specified array.
setCoocurrences(List) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Replace Coocurrences with the ones in the specified List.
setCoocurrences(Coocurrence[]) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Coocurrences with the ones in the specified array.
setCoocurrences(List) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Coocurrences with the ones in the specified List.
setCoocurrences(Coocurrence[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Replace Coocurrences with the ones in the specified array.
setCoocurrences(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Replace Coocurrences with the ones in the specified List.
setCoocurrences(Coocurrence[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Coocurrences with the ones in the specified array.
setCoocurrences(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Coocurrences with the ones in the specified List.
setCopyToHardDriveChecked(boolean) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets whether or not the metamorphosys file and nlm files have been chosen for installation.
setCot(CoocurrenceType) - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Sets the CoocurrenceType (COT).
setCot(CoocurrenceType) - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Sets the CoocurrenceType (COT).
setCot(CoocurrenceType) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Shorthand for CoocurrenceContextImpl.setCoocurrenceType(CoocurrenceType).
setCot(CoocurrenceType) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Shorthand for CoocurrenceImpl.setCoocurrenceType(CoocurrenceType).
setCui(String) - Method in interface gov.nih.nlm.umls.meta.Concept
Sets the concept unique identifier (CUI) for the Concept.
setCui(String) - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Sets the CUI.
setCui(String) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Shorthand for ConceptImpl.setConceptIdentifier(String).
setCui(String) - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Sets the CUI.
setCui(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Shorthand for PlaceholderConcept.setConceptIdentifier(String).
setCui1(String) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets concept identifier for the first atom (CUI1).
setCui1(String) - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Sets concept identifier for the first concept (CUI1).
setCui1(String) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Sets the concept identifier for the first atom (CUI1).
setCui1(String) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Shorthand for ConceptMappingImpl.setConceptIdentifier(String).
setCui2(String) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets the concept identifier for the second concept (CUI2).
setCui2(String) - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Sets the concept identifier for the second concept (CUI2).
setCui2(String) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Shorthand for AtomMappingImpl.setRelatedConceptIdentifier(String).
setCui2(String) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Shorthand for ConceptMappingImpl.setRelativeConceptIdentifier(String).
setCuiList(CuiList) - Method in interface gov.nih.nlm.mms.ConceptInputStream
Provides input stream access to the cui list.
setCuiList(CuiList) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Provides input stream access to the cui list.
setCuiList(CuiList) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Provides output stream access to the cui list.
setCuiList(CuiList) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Sets the CuiList reference.
setCuiList(CuiList) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Sets the CuiList reference.
setCuiList(CuiList) - Method in interface gov.nih.nlm.mms.SubsetListener
Provides filter access to the cui list.
setCuiList(CuiList) - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Provides filter access to the cui list.
setCurrentConcept(Concept) - Method in class gov.nih.nlm.mms.browser.ConceptList
Sets the current Concept.
setCurrentConfigFile(String) - Method in class gov.nih.nlm.mms.UserConfiguration
Sets the path to the current configuration file.
setCutMode(boolean) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Sets the cut mode.
setCvf(ContentView) - Method in interface gov.nih.nlm.umls.meta.ContentViewElement
Sets tbe ContentView definition for this ConceptElement (CVF).
setCvf(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Shorthand for AttributeImpl.setContentView(ContentView).
setCvf(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Shorthand for AttributeValueImpl.setContentView(ContentView).
setCvf(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Shorthand for ComponentHistoryImpl.setContentView(ContentView).
setCvf(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Shorthand for ContextImpl.setContentView(ContentView).
setCvf(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Shorthand for CoocurrenceContextImpl.setContentView(ContentView).
setCvf(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Shorthand for CoocurrenceImpl.setContentView(ContentView).
setCvf(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Shorthand for DefinitionImpl.setContentView(ContentView).
setCvf(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.setContentView(ContentView).
setCvf(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Shorthand for MappingImpl.setContentView(ContentView).
setCvf(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.setContentView(ContentView).
setCvf(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Shorthand for RelationshipImpl.setContentView(ContentView).
setCvf(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Shorthand for SemanticTypeImpl.setContentView(ContentView).
setCvf(ContentView) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Shorthand for SourceContextImpl.setContentView(ContentView).
setCxl(String) - Method in interface gov.nih.nlm.umls.meta.ContextMember
Sets the label for this ContextMember (CXL).
setCxl(String) - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Shorthand for ContextMemberImpl.setLabel(String).
setCxn(int) - Method in interface gov.nih.nlm.umls.meta.Context
Sets the context number (CXN).
setCxn(int) - Method in interface gov.nih.nlm.umls.meta.SourceContext
Sets the context number (CXN).
setCxn(int) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Shorthand for ContextImpl.setContextNumber(int).
setCxn(int) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Shorthand for SourceContextImpl.setContextNumber(int).
setData(ArrayList) - Method in class gov.nih.nlm.mms.filters.PrecedenceTableModel
 
setDataChanged(boolean) - Method in interface gov.nih.nlm.mms.GUIConfigurable
Sets the value of the data changed flag.
setDataChanged(boolean) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Sets the "has data changed" flag.
setDataChanged(boolean) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Sets the "has data changed" flag.
setDataChanged(boolean) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Sets the "has data changed" value.
setDataChanged(boolean) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Sets the "has data changed" flag.
setDataChanged(boolean) - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Sets the value of the data changed flag.
setDataChanged(boolean) - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Sets the value of the data changed flag.
setDataChanged(boolean) - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Method allows the data_changed value to be set from the main gui from the undo/redo mechanism.
setDataType(String) - Method in class gov.nih.nlm.util.ColumnStatistics
Sets the column data type.
setDataTypeLength(String) - Method in class gov.nih.nlm.util.ColumnStatistics
Sets the column data type length.
setDef(String) - Method in interface gov.nih.nlm.umls.meta.Definition
Sets the definition value (DEF).
setDef(String) - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Shorthand for DefinitionImpl.setDefinition(String).
setDefinition(String) - Method in interface gov.nih.nlm.umls.meta.Definition
Sets the definition value (DEF).
setDefinition(String) - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Sets the definition value (DEF).
setDefinitions(Definition[]) - Method in interface gov.nih.nlm.umls.meta.Atom
Replace Definitions with the ones in the specified array.
setDefinitions(List) - Method in interface gov.nih.nlm.umls.meta.Atom
Replace Definitions with the ones in the specified List.
setDefinitions(Definition[]) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Definitions with the ones in the specified array.
setDefinitions(List) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Definitions with the ones in the specified List.
setDefinitions(Definition[]) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Replace Definitions with the ones in the specified array.
setDefinitions(List) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Replace Definitions with the ones in the specified List.
setDefinitions(Definition[]) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Definitions with the ones in the specified array.
setDefinitions(List) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Definitions with the ones in the specified List.
setDefinitions(Definition[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Replace Definitions with the ones in the specified array.
setDefinitions(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Replace Definitions with the ones in the specified List.
setDefinitions(Definition[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Definitions with the ones in the specified array.
setDefinitions(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Definitions with the ones in the specified List.
setDependentSource(Source) - Method in class gov.nih.nlm.mms.Dependency
Sets the dependent Source.
setDescription(String) - Method in class gov.nih.nlm.mms.DefaultSubset
Sets the description of the DefaultSubset.
setDescription(String) - Method in class gov.nih.nlm.util.ColumnStatistics
Sets the the description.
setDescription(String) - Method in class gov.nih.nlm.util.FileStatistics
Sets the file description
setDialog(FindDialog) - Method in class gov.nih.nlm.mms.browser.JEditorPaneFinderHandler
Sets the JDialog for the handler.
setDialog(FindDialog) - Method in interface gov.nih.nlm.util.FinderHandler
Sets the FindDialog for the handler.
setDir(String) - Method in interface gov.nih.nlm.umls.meta.Relationship
Sets the directionality value (DIR).
setDir(String) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the directionality value (DIR).
setDirectoryHistory(String[]) - Method in class gov.nih.nlm.mms.browser.BrowserState
Resets the directory history to that given.
setDirectoryToConceptListMap(Map) - Method in class gov.nih.nlm.mms.browser.BrowserState
Resets the Map of directories to their ConceptLists.
setDocument(HTMLDocument) - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Sets an HTMLDocument as the document to print.
setDocument(JEditorPane) - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Sets the document to print as the one contained in a JEditorPane.
setDocument(PlainDocument) - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Sets a PlainDocument as the Document to print.
setDocument(String, Document) - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Sets the content type and document of the JEditorPane.
setEditor(JEditorPane) - Method in class gov.nih.nlm.mms.browser.JEditorPaneFinderHandler
Set the JEditorPane holding the document to be searched
setEfficientMode(boolean) - Method in interface gov.nih.nlm.mms.MetamorphoSysInputStream
Sets the subsetting mode to efficient.
setEfficientMode(boolean) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Sets the subsetting mode to efficient.
setEfficientMode(boolean) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Sets the subsetting mode to efficient.
setEnableButtons() - Method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
Logic for control of enabling and disabling gui buttons.
setEnforceDependentSourceSelection(boolean) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method sets whether or not the Enforce Dependent Source Selection option will be executed on the gui.
setEnforceFamilySelection(boolean) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method sets whether or not the Enforce Family Selection option will be executed on the gui.
setExpr(String) - Method in interface gov.nih.nlm.umls.meta.MapObject
Sets the expression (FROMEXPR or TOEXPR).
setExpr(String) - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Sets the expression (FROMEXPR or TOEXPR).
setExpression(String) - Method in interface gov.nih.nlm.umls.meta.MapObject
Sets the expression (FROMEXPR or TOEXPR).
setExpression(String) - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Sets the expression (FROMEXPR or TOEXPR).
setExternalName(String) - Method in interface gov.nih.nlm.umls.meta.Locator
Sets the actual name that occurs in the information source (SNA) if not otherwise present in the Metathesaurus.
setExternalName(String) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Sets the actual name that occurs in the information source (SNA) if not otherwise present in the Metathesaurus.
setFileName(String) - Method in class gov.nih.nlm.util.ColumnStatistics
Sets the file name.
setFileName(String) - Method in class gov.nih.nlm.util.FileStatistics
Sets the file name.
setFileToOpen(File) - Method in class gov.nih.nlm.mms.OpenConfigAction
Sets the file to be opened.
setFilteredConcept(Concept) - Method in class gov.nih.nlm.mms.CuiSuiAuiList
Set the final state of the Concept after filtering.
setFontFamily(String) - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Sets the font family for this ConceptView.
setFontFamily(String) - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Sets the font family for this Finder.
setFontFamily(String) - Method in class gov.nih.nlm.mms.browser.BrowserState
Resets the font family to that given.
setFontFamily(String) - Method in interface gov.nih.nlm.mms.browser.ConceptView
Sets the font family for this ConceptView.
setFontFamily(String) - Method in interface gov.nih.nlm.mms.browser.Finder
Sets the font family for this Finder.
setFontFamily(String) - Method in class gov.nih.nlm.mms.browser.FinderManager
Notifies all the Finders of the font family to be used for text display.
setFontFamily(String) - Method in class gov.nih.nlm.mms.browser.ReportsManager
Notifies all the ConceptViews of the font family to be used for text display.
setFontPointSize(int) - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Sets the font point size for this ConceptView.
setFontPointSize(int) - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Sets the font point size for this Finder.
setFontPointSize(int) - Method in class gov.nih.nlm.mms.browser.BrowserState
Resets the font point size to that given.
setFontPointSize(int) - Method in interface gov.nih.nlm.mms.browser.ConceptView
Sets the font point size for this ConceptView.
setFontPointSize(int) - Method in interface gov.nih.nlm.mms.browser.Finder
Sets the font point size for this Finder.
setFontPointSize(int) - Method in class gov.nih.nlm.mms.browser.FinderManager
Notifies all the Finders of the font point size to be used for text display.
setFontPointSize(int) - Method in class gov.nih.nlm.mms.browser.ReportsManager
Notifies all the ConceptViews of the font point size to be used for text display.
setFr(int) - Method in interface gov.nih.nlm.umls.meta.Locator
Set the frequency (FR).
setFr(int) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.setFrequency(int).
setFrequency(int) - Method in interface gov.nih.nlm.umls.meta.Locator
Sets the frequency (FR).
setFrequency(int) - Method in interface gov.nih.nlm.umls.meta.QualifierFrequency
Sets the frequency;
setFrequency(int) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Sets the frequency (FR).
setFrequency(int) - Method in class gov.nih.nlm.umls.meta.impl.QualifierFrequencyImpl
Sets the frequency;
setFrequencyMeaning(String) - Method in interface gov.nih.nlm.umls.meta.Locator
Returns the meaning of the frequency (UN), if the frequency is set.
setFrequencyMeaning(String) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Returns the meaning of the frequency (UN), if the frequency is set.
setFrom(MapObject) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the mapped from MapObject.
setFrom(MapObject) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the mapped from MapObject.
setGui(MetamorphoSysGUI) - Static method in class gov.nih.nlm.mms.MMSToolkit
Sets a reference to the MetamorphoSysGUI.
setHandler(FinderHandler) - Method in class gov.nih.nlm.swing.FindDialog
Sets the FinderHandler that will execute the find operation.
setHasChild(boolean) - Method in interface gov.nih.nlm.umls.meta.ContextMember
Sets the flag indicating whether or not this ContextMember has a child.
setHasChild(boolean) - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Sets the flag indicating whether or not this ContextMember has a child.
setHcd(String) - Method in interface gov.nih.nlm.umls.meta.Context
Sets the hierarchical code (HCD).
setHcd(String) - Method in interface gov.nih.nlm.umls.meta.ContextMember
Sets the hierarchical code (HCD).
setHcd(String) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Shorthand for ContextImpl.setHierarchicalCode(String).
setHcd(String) - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Shorthand for ContextMemberImpl.setHierarchicalCode(String).
setHierarchicalCode(String) - Method in interface gov.nih.nlm.umls.meta.Context
Sets the hierarchical code (HCD).
setHierarchicalCode(String) - Method in interface gov.nih.nlm.umls.meta.ContextMember
Sets the hierarchical code (HCD).
setHierarchicalCode(String) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Sets the hierarchical code (HCD).
setHierarchicalCode(String) - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Sets the hierarchical code (HCD).
setHighScale(int) - Method in class gov.nih.nlm.mms.MMSProgressMonitor
Sets the high scale for scaled progress updates.
setHomeDirectory(String) - Method in class gov.nih.nlm.mms.ApplicationConfiguration
Sets the path to the home directory.
setId(String) - Method in class gov.nih.nlm.mms.DefaultSubset
Sets the identifier of the DefaultSubset.
setId(String) - Method in interface gov.nih.nlm.umls.meta.MapObject
Sets the unique identifier (FROMID or TOID).
setId(String) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the unique identifier (MAPID).
setId(String) - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Sets the unique identifier (FROMID or TOID).
setId(String) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the unique identifier (MAPID).
setIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Sets the unique identifier (UI).
setIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.MapObject
Sets the unique identifier (FROMID or TOID).
setIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the unique identifier (MAPID).
setIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Sets the unique identifier (UI).
setIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Sets the unique identifier (FROMID or TOID).
setIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the unique identifier (MAPID).
setIgnoreEvents(boolean) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Sets the gui to ignore reponding to ChangeEvents.
setIgnoreEvents(boolean) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveListSelectionListener
Method that turns off responses to the ListSelectionEvents
setIgnoreEvents(boolean) - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Method that turns off responses to the ListSelectionEvents
setIgnoreEvents(boolean) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveListSelectionListener
Method that turns off responses to the ListSelectionEvents.
setIgnoreEvents(boolean) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupListSelectionListener
Turns off responses to the ListSelectionEvents.
setIgnoreEvents(boolean) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveListSelectionListener
Sets the flag indicating whether or not to ignore events.
setIgnoreEvents(boolean) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveListSelectionListener
Method that turns off responses to the ListSelectionEvents.
setIgnoreEvents(boolean) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsListSelectionListener
Turns off responses to the ListSelectionEvents.
setIgnoreEvents(boolean) - Method in interface gov.nih.nlm.swing.IgnorableListener
Set the flag indicating whether or not events should be ignored.
setIgnoreValueChangedEvents(boolean) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveJTable
This method turns on/off the list selection listener for this class.
setInCurrentSubset(boolean) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets the flag indicating whether or not this AtomMapping is in the current subset (MAPIN).
setInCurrentSubset(boolean) - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Sets the flag indicating whether or not this ConceptMapping is in the current subset (MAPIN).
setInCurrentSubset(boolean) - Method in class gov.nih.nlm.umls.meta.Source
Sets whether or not this represents the current version of the source.
setInCurrentSubset(boolean) - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Sets whether or not this represents the current version of the source.
setInCurrentSubset(boolean) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Sets the flag indicating whether or not this AtomMapping is in the current subset (MAPIN).
setInCurrentSubset(boolean) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Sets the flag indicating whether or not this ConceptMapping is in the current subset (MAPIN).
setInCurrentSubset(boolean) - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Sets whether or not this represents the current version of the source.
setInputStream(MetamorphoSysInputStream) - Method in class gov.nih.nlm.mms.UserConfiguration
Sets the class name of the ConceptInputStream to be used during subsetting and instantiates it.
setInstallUMLS(boolean) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets whether the user chose the Install UMLS button on the WelcomeGUI.
setIsAssertedDirection(boolean) - Method in interface gov.nih.nlm.umls.meta.Relationship
Sets the flag indicating the directionality of the Relationship.
setIsAssertedDirection(boolean) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the flag indicating the directionality of the Relationship.
setIspref(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the flag indicating whether or not this Atom is preferred (ISPREF).
setIspref(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the flag indicating whether or not this Atom is preferred (ISPREF).
setLabel(String) - Method in interface gov.nih.nlm.umls.meta.ContextMember
Sets the label for this ContextMember.
setLabel(String) - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Sets the label for this ContextMember.
setLanguage(Language) - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Sets the Language of the index that will be searched.
setLanguage(String) - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Sets the language of the index file that should be searched.
setLanguage(Language) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the Language (LAT).
setLanguage(String) - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Sets the language abbreviation.
setLanguage(Language) - Method in interface gov.nih.nlm.umls.meta.Term
Sets the Language (LAT).
setLanguage(String) - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Sets the language abbreviation.
setLanguage(Language) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the Language (LAT).
setLanguage(Language) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Sets the Language (LAT).
setLastReleaseVersion(String) - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Sets the last release version in which the CUI1 was valid (VER).
setLastReleaseVersion(String) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Sets the last release version in which the CUI1 was valid (VER).
setLat(Language) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the Language (LAT).
setLat(String) - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Sets the language abbreviation.
setLat(Language) - Method in interface gov.nih.nlm.umls.meta.Term
Sets the Language (LAT).
setLat(String) - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Sets the language abbreviation.
setLat(Language) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.setLanguage(Language).
setLat(Language) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Shorthand for TermImpl.setLanguage(Language).
setLexiconChecked(boolean) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets whether or not the lexicon has been chosen for installation.
setLexiconFile(File) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets the File that contains the lexicon data.
setLineCount(int) - Method in class gov.nih.nlm.util.FileStatistics
Sets the line count.
setListData(Object[]) - Method in class gov.nih.nlm.swing.SuperJList
Sets the list data.
setLocators(Locator[]) - Method in interface gov.nih.nlm.umls.meta.Atom
Replace Locators with the ones in the specified array.
setLocators(List) - Method in interface gov.nih.nlm.umls.meta.Atom
Replace Locators with the ones in the specified List.
setLocators(Locator[]) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Locators with the ones in the specified array.
setLocators(List) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Locators with the ones in the specified List.
setLocators(Locator[]) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Replace Locators with the ones in the specified array.
setLocators(List) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Replace Locators with the ones in the specified List.
setLocators(Locator[]) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Locators with the ones in the specified array.
setLocators(List) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Locators with the ones in the specified List.
setLocators(Locator[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Replace Locators with the ones in the specified array.
setLocators(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Replace Locators with the ones in the specified List.
setLocators(Locator[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Locators with the ones in the specified array.
setLocators(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Locators with the ones in the specified List.
setLowScale(int) - Method in class gov.nih.nlm.mms.MMSProgressMonitor
Sets the low scale for scaled progress updates.
setLowercaseWord(String) - Method in class gov.nih.nlm.umls.meta.impl.LowercaseWordIndexEntryImpl
Set the String being indexed
setLui(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the term identifier (LUI).
setLui(String) - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Sets the LUI.
setLui(String) - Method in interface gov.nih.nlm.umls.meta.Term
Sets the term identifier (LUI).
setLui(String) - Method in interface gov.nih.nlm.umls.meta.TermAttribute
Sets the term identifier (LUI).
setLui(String) - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Sets the LUI.
setLui(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.setTermIdentifier(String).
setLui(String) - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Shorthand for TermAttributeImpl.setTermIdentifier(String).
setLui(String) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Shorthand for TermImpl.setTermIdentifier(String).
setLvgChecked(boolean) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets whether or not LVG has been chosen for installation.
setLvgConfigFile(String) - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
 
setMap(Object, Map) - Method in class gov.nih.nlm.util.MultiMap
Sets the Map for the key.
setMapReason(String) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets the reason for this AtomMapping (MAPREASON).
setMapReason(String) - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Sets the reason for this ConceptMapping (MAPREASON).
setMapReason(String) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Sets the reason for this AtomMapping (MAPREASON).
setMapReason(String) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Sets the reason for this ConceptMapping (MAPREASON).
setMapin(String) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets the "in current subset" value (MAPIN).
setMapin(String) - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Sets the "in current subset" value (MAPIN).
setMapin(String) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Sets the "in current subset" value (MAPIN).
setMapin(String) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Sets the "in current subset" value (MAPIN).
setMappings(Mapping[]) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Mappings with the ones in the specified array.
setMappings(List) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Mappings with the ones in the specified List.
setMappings(Mapping[]) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Mappings with the ones in the specified array.
setMappings(List) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Mappings with the ones in the specified List.
setMappings(Mapping[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Mappings with the ones in the specified array.
setMappings(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Mappings with the ones in the specified List.
setMaxLength(int) - Method in class gov.nih.nlm.util.ColumnStatistics
Sets the maximum length of column
setMaxResults(int) - Method in class gov.nih.nlm.mms.browser.TreeBrowserFinder
Sets the maximum number of cuis that will be returned as results of the search.
setMaxResults(int) - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Sets the maximum number of results that should be returned.
setMaximum(int) - Method in class gov.nih.nlm.mms.MMSProgressMonitor
Set the maximum progress value and repack.
setMetaDestinationDirectory(File) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets the directory into which the Metathesaurus subset will be made.
setMetadata(MetaDescription[]) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Sets MetaDescription in the current subset.
setMetadata(List) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Sets MetaDescriptions in the current subset.
setMetadata(MetaDescription[]) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Sets MetaDescription in the current subset.
setMetadata(List) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Sets MetaDescriptions in the current subset.
setMetamorphoSysConfigurationDirectory(File) - Method in class gov.nih.nlm.mms.InstallConfiguration
Returns the File for the MetamorphoSys "config" directory to use.
setMetamorphoSysFile(File) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets the File that contains the MetamorphoSys application.
setMetathesaurusChecked(boolean) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets whether or not a directory should be created for the Metathesaurus.
setMetathesaurusFiles(File[]) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets the File that contains the Metathesaurus data.
setMinLength(int) - Method in class gov.nih.nlm.util.ColumnStatistics
Set the minimum length of column
setMinimum(int) - Method in class gov.nih.nlm.mms.MMSProgressMonitor
Set the minimum progress value and repack.
setModel(CutandPasteDNDTableModel) - Method in class gov.nih.nlm.swing.CutandPasteDNDTable
Sets the table model.
setModel(TableModel) - Method in class gov.nih.nlm.swing.SortableJTable
Sets the model for the table.
setModel(TableModel) - Method in class gov.nih.nlm.swing.TableMap
Sets the model underlying the map.
setModel(TableModel) - Method in class gov.nih.nlm.swing.TableSorter
Sets the model and resets the map.
setName(String) - Method in class gov.nih.nlm.mms.DefaultSubset
Sets the name of the DefaultSubset.
setName(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the name (STR).
setName(String) - Method in interface gov.nih.nlm.umls.meta.StringInfo
Sets the name (STR).
setName(String) - Method in interface gov.nih.nlm.umls.meta.Term
Sets the name (STR).
setName(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the name (STR).
setName(String) - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Sets the name (STR).
setName(String) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Sets the name (STR).
setNewConfiguration(boolean) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets whether or not the user is running with a new configuration file.
setNormalizedString(String) - Method in class gov.nih.nlm.umls.meta.impl.NormalizedStringIndexEntryImpl
Set the String being indexed
setNormalizedWord(String) - Method in class gov.nih.nlm.umls.meta.impl.NormalizedWordIndexEntryImpl
Set the String being indexed
setNote(String) - Method in class gov.nih.nlm.mms.MMSProgressMonitor
Update the message shown by the progress monitor and repack.
setNumeric(boolean) - Method in class gov.nih.nlm.util.StringFieldComparator
Causes sort to be numeric
setOnePagePerSheet() - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Sets the number of pages per sheet to one (1).
setOnePagePerSheet() - Method in class gov.nih.nlm.util.JComponentPrintHandler
Sets the number of pages per sheet to one (1).
setOperation(int) - Method in class gov.nih.nlm.mms.ConfigureSubsetProgressMonitor
Set the indicated operation and repack.
setOperation(int) - Method in class gov.nih.nlm.mms.InstallationProgressMonitor
Set the indicated operation and repack.
setOperation(int) - Method in class gov.nih.nlm.mms.MMSProgressMonitor
Set the indicated operation and repack.
setOutputStream(MetamorphoSysOutputStream) - Method in class gov.nih.nlm.mms.UserConfiguration
Sets the ConceptOutputStream to be used during subsetting and instantiates it.
setOverrideConfigurationFiles(boolean) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets the flag indicating whether or not settings from this object should override the configuration files
setPage(URL) - Method in class gov.nih.nlm.swing.HtmlViewer
Sets the URL to display.
setPageSize(int) - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Sets the page size.
setPageSize(int) - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Sets the page size.
setPanelSelections() - Method in interface gov.nih.nlm.mms.GUIConfigurable
Updates the view to reflect the data model.
setPanelSelections() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Applies the input stream state to the GUI panel.
setPanelSelections() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Method makes selections on the panel.
setPanelSelections() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Applies the input stream state to the GUI panel.
setPanelSelections() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Applies the state of the output stream to the GUI.
setPanelSelections() - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Updates the view to reflect the data model.
setPanelSelections() - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Updates the view to reflect the data model.
setPanelSelections() - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method is responsible for selecting the rows of the table based on the properties for this filter.
setPanelSelections() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Inactive method because there are no items to configure on this filter.
setPanelSelections() - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
This method is responsible for selecting the rows of the table based on the properties for this filter.
setPanelSelections() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Applies state to panel selections.
setPanelSelections() - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method is responsible for selecting the rows of the table based on the properties for this filter.
setPanelSelections() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Selects rows on the source/term type table for rows of termgroups that should be removed.
setPanelSelections() - Method in class gov.nih.nlm.mms.filters.RxNormFilter
Inactive method because there are no items to configure on this filter.
setPanelSelections() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Applies filter state to panel selections.
setPanelSelections() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method makes selections on the filter's table
setPanelSelections() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Selects rows on the suppressiblity table for rows of termgroups that should be suppressed.
setParentAtomIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Context
Sets the parent atom identifier (PAUI).
setParentAtomIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.SourceContext
Sets the parent atom identifier (PAUI).
setParentAtomIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Sets the parent atom identifier (PAUI).
setParentAtomIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Sets the parent atom identifier (PAUI).
setPathToRoot(String) - Method in interface gov.nih.nlm.umls.meta.Context
Sets the path to the root (PTR) as a "." separated list of AUI values.
setPathToRoot(String) - Method in interface gov.nih.nlm.umls.meta.SourceContext
Sets the path to the root (PTR) as a "." separated list of AUI values.
setPathToRoot(String) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Sets the path to the root (PTR) as a "." separated list of AUI values.
setPathToRoot(String) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Sets the path to the root (PTR) as a "." separated list of AUI values.
setPaui(String) - Method in interface gov.nih.nlm.umls.meta.Context
Sets the parent atom identifier (PAUI).
setPaui(String) - Method in interface gov.nih.nlm.umls.meta.SourceContext
Sets the parent atom identifier (PAUI).
setPaui(String) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Shorthand for ContextImpl.setParentAtomIdentifier(String).
setPaui(String) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Shorthand for SourceContextImpl.setParentAtomIdentifier(String).
setPopupMenu(JPopupMenu) - Method in class gov.nih.nlm.swing.SuperJList
Sets the JPopupMenu.
setPrintComponent(JEditorPane) - Method in class gov.nih.nlm.util.JComponentPrintHandler
Sets the component to print to the JEditorPane.
setPrintComponent(JTable) - Method in class gov.nih.nlm.util.JComponentPrintHandler
Sets the component to print to the JTable.
setPrintComponent(JTree) - Method in class gov.nih.nlm.util.JComponentPrintHandler
Sets the component to print to the JTable.
setPrintable(Printable) - Method in class gov.nih.nlm.util.PrintPreviewAction
Sets the Printable to preview.
setPrinterName(String) - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Sets the printer name.
setPrinterName(String) - Method in class gov.nih.nlm.util.JComponentPrintHandler
Sets the printer name.
setProducerFinished() - Method in class gov.nih.nlm.mms.ConceptQueue
Sets the flag to true indicating that the producer is finished adding Concepts.
setProducerFinished() - Method in class gov.nih.nlm.mms.IndexEntryQueue
Sets the flag to true indicating that the producer is finished adding IndexEntrys.
setProgress(int) - Method in class gov.nih.nlm.mms.MMSProgressMonitor
Returns the progress monitor with new value and repack.
setProgressBarVisible(boolean) - Method in class gov.nih.nlm.mms.MMSProgressMonitor
Sets the JProgressBar to be visible or not.
setProperties(Properties) - Method in interface gov.nih.nlm.mms.Configurable
Sets the Properties representing the configuration choices.
setProperties(Properties) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Sets the current state of the input stream from a Properties object.
setProperties(Properties) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Sets the current state of the output stream from a Properties object.
setProperties(Properties) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Sets the current state of the input stream from a Properties object.
setProperties(Properties) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Sets the current state of the output stream from a Properties object.
setProperties(Configurable) - Method in class gov.nih.nlm.mms.UserConfiguration
Set the Properties corresponding to the specified Configurable.
setProperties(Properties) - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Sets the Properties representing the configuration choices.
setProperties(Properties) - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Sets the Properties representing the configuration choices.
setProperties(Properties) - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Sets the view properties.
setProperties(Properties) - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Sets the view properties.
setProperties(Properties) - Method in class gov.nih.nlm.mms.browser.TreeBrowserFinder
Method provides the GUIConfigurable with all properties specific to the Finder.
setProperties(Properties) - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Sets the finder properties.
setProperties(Properties) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
Method provides the filter with all properties specific to the filter.
setProperties(Properties) - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Not an active method, because this filter doesn't have any filter specific properties.
setProperties(Properties) - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Method provides the filter with all properties specific to the filter.
setProperties(Properties) - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
Sets all Properties specific to the filter.
setProperties(Properties) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
Method provides the filter with all properties specific to the filter.
setProperties(Properties) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Sets filter state.
setProperties(Properties) - Method in class gov.nih.nlm.mms.filters.RxNormFilter
Not an active method, because this filter doesn't have any filter specific properties.
setProperties(Properties) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Sets the filter state via a Properties object.
setProperties(Properties) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Method provides the filter with all properties specific to the filter.
setProperties(Properties) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Sets filter state.
setProperties(Properties) - Static method in class gov.nih.nlm.swing.SwingToolkit
Sets the toolkit properties.
setPropertiesChanged() - Method in class gov.nih.nlm.mms.UserConfiguration
Sets the flag indicating that the non-filter properties have changed.
setProperty(String, String) - Static method in class gov.nih.nlm.swing.SwingToolkit
Sets a property.
setPtr(String) - Method in interface gov.nih.nlm.umls.meta.Context
Sets the path to the root (PTR) as a "." separated list of AUI values.
setPtr(String) - Method in interface gov.nih.nlm.umls.meta.SourceContext
Sets the path to the root (PTR) as a "." separated list of AUI values.
setPtr(String) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Shorthand for ContextImpl.setPathToRoot(String).
setPtr(String) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Shorthand for SourceContextImpl.setPathToRoot(String).
setQualifier(String) - Method in interface gov.nih.nlm.umls.meta.QualifierFrequency
Sets the qualifier value.
setQualifier(String) - Method in class gov.nih.nlm.umls.meta.impl.QualifierFrequencyImpl
Sets the qualifier value.
setQualifiers(QualifierFrequency[]) - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Replaces the QualifierFrequency values with those in the specified array.
setQualifiers(List) - Method in interface gov.nih.nlm.umls.meta.Coocurrence
Replaces the QualifierFrequency values with those in the specified List
setQualifiers(QualifierFrequency[]) - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Replaces the QualifierFrequency values with those in the specified array.
setQualifiers(List) - Method in interface gov.nih.nlm.umls.meta.CoocurrenceContext
Replaces the QualifierFrequency values with those in the specified List
setQualifiers(QualifierFrequency[]) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Replaces the QualifierFrequency values with those in the specified array.
setQualifiers(List) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Replaces the QualifierFrequency values with those in the specified List
setQualifiers(QualifierFrequency[]) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Replaces the QualifierFrequency values with those in the specified array.
setQualifiers(List) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Replaces the QualifierFrequency values with those in the specified List
setQueryUserToOpenSavedConfig(boolean) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets whether the user should be queried to open the last saved configuration when initializing the RRF Browser.
setRank(int) - Method in interface gov.nih.nlm.umls.meta.ContextMember
Sets the rank (RNK) if the member is an ancestor
setRank(String) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the rank (MAPRANK).
setRank(int) - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Sets the rank (RNK) if the member is an ancestor
setRank(String) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the rank (RANK).
setReason(String) - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Sets the reason for the change (REASON).
setReason(String) - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Set the reason for this ConceptMapping.
setReason(String) - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Sets the reason for the change (REASON).
setReason(String) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Set the reason for this ConceptMapping.
setRecordIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Locator
Sets the record identifier (SOUI) corresponding to this Locator in the actual information source.
setRecordIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Sets the record identifier (SOUI) corresponding to this Locator in the actual information source.
setRel(RelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets the relationship between the two AUIs (REL).
setRel(RelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Sets the relationship between the two CUIs (REL).
setRel(RelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the RelationshipLabel (REL).
setRel(RelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.Relationship
Sets the RelationshipLabel (REL).
setRel(RelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Shorthand for AtomMappingImpl.setRelationshipLabel(RelationshipLabel).
setRel(RelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Shorthand for ConceptMappingImpl.setRelationship(RelationshipLabel).
setRel(RelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Shorthand for MappingImpl.setRelationshipName(RelationshipLabel).
setRel(RelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Shorthand for RelationshipImpl.setRelationshipLabel(RelationshipLabel).
setRela(AdditionalRelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets the AdditionalRelationshipLabel (RELA).
setRela(AdditionalRelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Sets the AdditionalRelationshipLabel (RELA).
setRela(AdditionalRelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.Context
Sets the AdditionalRelationshipLabel (RELA) from the context member to its parent.
setRela(AdditionalRelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.ContextMember
Sets the AdditionalRelationshipLabel (RELA) from the context member to its parent.
setRela(AdditionalRelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the AdditionalRelationshipLabel (RELA).
setRela(AdditionalRelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.Relationship
Sets the AdditionalRelationshipLabel (RELA).
setRela(AdditionalRelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Shorthand for AtomMappingImpl.setAdditionalRelationshipLabel(AdditionalRelationshipLabel).
setRela(AdditionalRelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Shorthand for ConceptMappingImpl.setAdditionalRelationshipLabel(AdditionalRelationshipLabel).
setRela(AdditionalRelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Shorthand for ContextImpl.setAdditionalRelationshipLabel(AdditionalRelationshipLabel).
setRela(AdditionalRelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Shorthand for ContextMemberImpl.setAdditionalRelationshipLabel(AdditionalRelationshipLabel).
setRela(AdditionalRelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Shorthand for MappingImpl.setAdditionalRelationshipLabel(AdditionalRelationshipLabel).
setRela(AdditionalRelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Shorthand for RelationshipImpl.setAdditionalRelationshipLabel(AdditionalRelationshipLabel).
setRelatedAtom(Atom) - Method in interface gov.nih.nlm.umls.meta.RelatedAtomElement
Sets the Atom to which this element is related.
setRelatedAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.AtomCoocurrenceImpl
Sets the second atom involved.
setRelatedAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.AtomRelationshipImpl
Sets the related atom involved.
setRelatedAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Sets the related atom of the ancestor, sibling, or child.
setRelatedAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Sets the related Atom involved.
setRelatedAtom(Atom) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the related atom involved.
setRelatedAtomIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets atom identifier for the second atom (AUI2).
setRelatedAtomIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Sets the atom identifier for the second atom (AUI2).
setRelatedConcept(Concept) - Method in interface gov.nih.nlm.umls.meta.RelatedConceptElement
Sets the Concept to which this element is related.
setRelatedConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Sets the related concept of the ancestor, sibling, or child.
setRelatedConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceGroupImpl
Sets the second concept involved.
setRelatedConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Sets the related concept involved.
setRelatedConcept(Concept) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the related concept involved.
setRelatedConceptIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets the concept identifier for the second concept (CUI2).
setRelatedConceptIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Sets the concept identifier for the second atom (CUI2).
setRelatedSourceIdentifierType(SourceIdentifierType) - Method in interface gov.nih.nlm.umls.meta.RelatedSourceIdentifierElement
Sets the SourceIdentifierType to which this element is connected.
setRelatedSourceIdentifierType(SourceIdentifierType) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the SourceIdentifierType to which this element is connected.
setRelationship(RelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Sets the relationship between the two CUIs (REL).
setRelationship(Relationship) - Method in interface gov.nih.nlm.umls.meta.RelationshipElement
Sets the Relationship to which this element is connected.
setRelationship(RelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Sets the relationship between the two concepts (REL).
setRelationship(Relationship) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipAttributeImpl
Sets the Relationship this RelationshipAttribute is connected to.
setRelationshipGroup(String) - Method in interface gov.nih.nlm.umls.meta.Relationship
Sets the relationship group (RG).
setRelationshipGroup(String) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the relationship group (RG).
setRelationshipIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Relationship
Sets the Relationship unique identifier (RUI) related to this Relationship.
setRelationshipIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the Relationship unique identifier (RUI) related to this Relationship.
setRelationshipLabel(RelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets the relationship between the two AUIs (REL).
setRelationshipLabel(RelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.Relationship
Sets the RelationshipLabel (REL).
setRelationshipLabel(RelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Sets the relationship between the two concepts (REL).
setRelationshipLabel(RelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the RelationshipLabel (REL).
setRelationshipName(RelationshipLabel) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the RelationshipLabel (REL).
setRelationshipName(RelationshipLabel) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the RelationshipLabel (REL).
setRelationshipTypesToRemove(List) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method replaces the list of RelTypes to exclude with the one provided.
setRelationships(Relationship[]) - Method in interface gov.nih.nlm.umls.meta.Atom
Replace Relationships with the ones in the specified array.
setRelationships(List) - Method in interface gov.nih.nlm.umls.meta.Atom
Replace Relationships of the ones in the specified List.
setRelationships(Relationship[]) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Relationships with the ones in the specified array.
setRelationships(List) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace Relationships of the ones in the specified List.
setRelationships(Relationship[]) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Replace Relationships with the ones in the specified array.
setRelationships(List) - Method in class gov.nih.nlm.umls.meta.impl.AtomImpl
Replace Relationships of the ones in the specified List.
setRelationships(Relationship[]) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Relationships with the ones in the specified array.
setRelationships(List) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace Relationships of the ones in the specified List.
setRelationships(Relationship[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Replace Relationships with the ones in the specified array.
setRelationships(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Replace Relationships of the ones in the specified List.
setRelationships(Relationship[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Relationships with the ones in the specified array.
setRelationships(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace Relationships of the ones in the specified List.
setRelativeConceptIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Sets the concept identifier for the second concept (CUI2).
setRelativeConceptIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Sets the concept identifier for the second concept (CUI2).
setReleaseDatLocation(String) - Static method in class gov.nih.nlm.mms.MMSToolkit
Sets the location of the release.dat file.
setReleaseDate(Date) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Sets the release Date.
setReleaseDate(Date) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Sets the release Date.
setReleaseDescription(String) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Sets the release description.
setReleaseDescription(String) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Sets the release description.
setReleaseVersion(String) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets the release version.
setReleaseVersion(String) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets the release version in which the indicated change took place (VER).
setReleaseVersion(String) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Sets the release version.
setReleaseVersion(String) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Sets the release version in which the indicated change took place (VER).
setReleaseVersion(String) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Sets the release version.
setRemovableTermgroups(List) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Sets the removable termgroups list with the one provided.
setRemoveSelectedAttributes(boolean) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method sets whether or not the selections represent attributes to be excluded or attributes to be kept.
setRemoveSelectedRelationships(boolean) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method sets whether or not the selections represent relationship types to be excluded or relationship types to be kept.
setRemoveSelectedSemanticTypes(boolean) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
This method sets whether or not the selections represent semantic types to be excluded or semantic types to be kept.
setRemoveSelectedSources(boolean) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method sets whether or not the selections represent sources to be excluded or sources to be kept.
setRemoveSelectedTermgroups(boolean) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
This method sets whether or not the selections represent source term types to be excluded or source term types to be kept.
setRemoveSuppressibleData(boolean) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Sets the flag indicating whether or not suppressible data will be removed from the subset.
setReportsManager(ReportsManager) - Method in class gov.nih.nlm.mms.browser.ConceptListManager
Sets the ReportsManager.
setRes(String) - Method in interface gov.nih.nlm.umls.meta.MapObject
Sets the restriction (FROMRES or TORES).
setRes(String) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the human readable rule for use of mapping (MAPRES).
setRes(String) - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Sets the restriction (FROMRES or TORES).
setRes(String) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the human readable rule for use of mapping (MAPRES).
setRestriction(String) - Method in interface gov.nih.nlm.umls.meta.MapObject
Sets the restriction (FROMRES or TORES).
setRestriction(String) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the human readable rule for use of mapping (MAPRES).
setRestriction(String) - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Sets the restriction (FROMRES or TORES).
setRestriction(String) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the human readable rule for use of mapping (MAPRES).
setRestrictor(Restrictor) - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Sets the Restrictor that will be used to restrict the parts of the Concept that will be displayed in this ConceptView.
setRg(String) - Method in interface gov.nih.nlm.umls.meta.Relationship
Sets the relationship group (RG).
setRg(String) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Shorthand for RelationshipImpl.getRelationshipGroup().
setRui(String) - Method in interface gov.nih.nlm.umls.meta.Relationship
Shorthand for Relationship.setRelationshipIdentifier(String).
setRui(String) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Shorthand for RelationshipImpl.setRelationshipIdentifier(String).
setRule(String) - Method in interface gov.nih.nlm.umls.meta.MapObject
Sets the machine processable rule for when mapping is valid (FROMRULE or TORULE).
setRule(String) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the machine processable rule for when to apply mapping (MAPRULE).
setRule(String) - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Sets the machine processable rule for when mapping is valid (FROMRULE or TORULE).
setRule(String) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the machine processable rule for when to apply mapping (MAPRULE).
setSabin(String) - Method in class gov.nih.nlm.umls.meta.Source
Sets the "in current subset" value (SABIN).
setSabin(String) - Method in interface gov.nih.nlm.umls.meta.SourceMetaDescription
Sets the "in current subset" value (SABIN).
setSabin(String) - Method in class gov.nih.nlm.umls.meta.impl.SourceMetaDescriptionImpl
Sets the "in current subset" value (SABIN).
setSatui(String) - Method in interface gov.nih.nlm.umls.meta.AttributeElement
Sets the source asserted attribute identifier (SATUI) This is shorthand for AttributeElement.setSourceAttributeIdentifier(String).
setSatui(String) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Shorthand for AttributeImpl.setSourceAttributeIdentifier(String).
setSatui(String) - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Shorthand for AttributeValueImpl.setSourceAttributeIdentifier(String).
setSatui(String) - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Shorthand for DefinitionImpl.setSourceAttributeIdentifier(String).
setSatui(String) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.setSourceAttributeIdentifier(String).
setSaui(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the source asserted identifier (SAUI) for this Atom.
setSaui(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.setSourceAtomIdentifier(String).
setScaleWidthToFit(boolean) - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Set the scale width to fit flag.
setScaleWidthToFit(boolean) - Method in class gov.nih.nlm.util.JComponentPrintHandler
Set the scale width to fit flag.
setScaleWidthToFit(boolean) - Method in class gov.nih.nlm.util.OnePagePrintable
Sets the flag indicating whether or not to scale the content.
setScaleWidthToFit(boolean) - Method in class gov.nih.nlm.util.TwoPagePrintable
Sets the flag indiciating whether or not to scale content to fit the width of the page
setScalingFactor(double) - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Sets the scaling factor.
setScalingFactor(double) - Method in class gov.nih.nlm.util.JComponentPrintHandler
Sets the scaling factor.
setScalingFactor(double) - Method in class gov.nih.nlm.util.OnePagePrintable
Set the scaling factor.
setScalingFactor(double) - Method in class gov.nih.nlm.util.TwoPagePrintable
Set the scaling factor.
setScui(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the source attributed concept identifier (SCUI).
setScui(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.setSourceConceptIdentifier(String).
setSdui(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the source asserted descriptor (SDUI).
setSdui(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.setSourceDescriptor(String).
setSearchMode(String) - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
 
setSelectedDefaultSubset(DefaultSubset) - Method in class gov.nih.nlm.mms.ApplicationConfiguration
Gets called every time opened or changed config file.
setSelectedDefaultSubset(DefaultSubset) - Method in class gov.nih.nlm.mms.UserConfiguration
Sets the selected DefaultSubset.
setSelectedSources(List) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method replaces the selected_sources list with the one provided.
setSelectedSources(Set) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
This method replaces the selected_sources list with the one provided.
setSelectedValues(Object[], boolean) - Method in class gov.nih.nlm.swing.SuperJList
Programatically selects multiple items.
setSelections(List) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveListSelectionListener
Sets selections on the SortableJTable based on the attribute_types_to_remove data structure in the AttributeTypesToRemoveFilter.
setSelections(List) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveListSelectionListener
Sets selections on the SortableJTable based on the relationship_types_to_remove data structure in the RelationshipTypesToRemoveFilter.
setSelections() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupListSelectionListener
 
setSelections(List) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveJTable
Sets selections on the SemanticTypesToRemoveJTable
setSelections(List) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveListSelectionListener
Sets selections on the SemanticTypesToRemoveJTable based on the semantic types data structure in the SemanticTypesToRemoveFilter.
setSelections(List) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveJTable
Sets the selections to the given list of Sources.
setSelections(List) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveListSelectionListener
Sets selections on the SourcesToRemoveJTable based on the sources_to_remove data structure in the SourcesToRemoveFilter.
setSemanticNetworkChecked(boolean) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets whether or not the semantic network has been chosen for installation.
setSemanticNetworkFile(File) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets the File that contains the semantic network data.
setSemanticType(HierarchicalSemanticType) - Method in interface gov.nih.nlm.umls.meta.SemanticType
Sets the HierarchicalSemanticType (STY).
setSemanticType(HierarchicalSemanticType) - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Sets the HierarchicalSemanticType (STY).
setSemanticTypes(SemanticType[]) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace SemanticTypes with the ones in the specified array.
setSemanticTypes(List) - Method in interface gov.nih.nlm.umls.meta.Concept
Replace SemanticTypes with the ones in the specified List.
setSemanticTypes(SemanticType[]) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace SemanticTypes with the ones in the specified array.
setSemanticTypes(List) - Method in class gov.nih.nlm.umls.meta.impl.ConceptImpl
Replace SemanticTypes with the ones in the specified List.
setSemanticTypes(SemanticType[]) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace SemanticTypes with the ones in the specified array.
setSemanticTypes(List) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderConcept
Replace SemanticTypes with the ones in the specified List.
setSemanticTypesToRemove(List) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Sets the List of HierarchicalSemanticTypes to exclude.
setSid(String) - Method in interface gov.nih.nlm.umls.meta.MapObject
Sets the source asserted unique identifier (FROMSID or TOSID).
setSid(String) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the source asserted unique identifier (MAPSID).
setSid(String) - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Sets the source asserted unique identifier (FROMSID or TOSID).
setSid(String) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the source asserted unique identifier (MAPSID).
setSl(Source) - Method in interface gov.nih.nlm.umls.meta.Relationship
Sets the source of the relationship label (SL).
setSl(Source) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Shorthand for RelationshipImpl.setSourceOfLabel(Source).
setSna(String) - Method in interface gov.nih.nlm.umls.meta.Locator
Sets the actual name that occurs in the information source (SNA) if not otherwise present in the Metathesaurus.
setSna(String) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.setExternalName(String).
setSoui(String) - Method in interface gov.nih.nlm.umls.meta.Locator
Sets the record identifier (SOUI) corresponding to this Locator in the actual information source.
setSoui(String) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.setRecordIdentifier(String).
setSource(Source) - Method in class gov.nih.nlm.mms.Dependency
Sets the Source being depended upon.
setSource(Source) - Method in class gov.nih.nlm.mms.filters.AttType
This method sets the Source value of the attribute type.
setSource(Source) - Method in class gov.nih.nlm.mms.filters.RelType
This method sets the Source of the RelType.
setSource(Source) - Method in interface gov.nih.nlm.umls.meta.SourceElement
Sets the source for this SourceElement.
setSource(Source) - Method in class gov.nih.nlm.umls.meta.SourceTermType
Sets the Source.
setSource(Source) - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Sets the source for this AttributeContext.
setSource(Source) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Sets the source for this Attribute.
setSource(Source) - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Sets the source for this ComponentHistory.
setSource(Source) - Method in class gov.nih.nlm.umls.meta.impl.ContextImpl
Sets the source for this Context.
setSource(Source) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceContextImpl
Sets the source for this CoocurrenceContext.
setSource(Source) - Method in class gov.nih.nlm.umls.meta.impl.CoocurrenceImpl
Sets the source for this Coocurrence.
setSource(Source) - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Sets the source for this Definition.
setSource(Source) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Sets the source for this Locator.
setSource(Source) - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Sets the source for this MapObject.
setSource(Source) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the Source.
setSource(Source) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the source for this Atom.
setSource(Source) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the source for this Relationship.
setSource(Source) - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Sets the source for this StringContext.
setSourceAtomIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the source asserted identifier (SAUI) for this Atom.
setSourceAtomIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the source asserted identifier (SAUI) for this Atom.
setSourceAttributeIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.AttributeElement
Sets the source asserted attribute identifier (SATUI).
setSourceAttributeIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Sets the source asserted attribute identifier (SATUI).
setSourceAttributeIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Sets the source asserted attribute identifier (SATUI).
setSourceAttributeIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Sets the source asserted attribute identifier (SATUI).
setSourceAttributeIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Sets the source asserted attribute identifier (SATUI).
setSourceConceptIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the source attributed concept identifier (SCUI).
setSourceConceptIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the source attributed concept identifier (SCUI).
setSourceContexts(SourceContext[]) - Method in interface gov.nih.nlm.umls.meta.StringContext
Replace the SourceContexts with the ones in the specified array.
setSourceContexts(List) - Method in interface gov.nih.nlm.umls.meta.StringContext
Replace the SourceContexts with the ones in the specified List.
setSourceContexts(SourceContext[]) - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Replace the SourceContexts with the ones in the specified array.
setSourceContexts(List) - Method in class gov.nih.nlm.umls.meta.impl.StringContextImpl
Replace the SourceContexts with the ones in the specified List.
setSourceDependencies(List) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Replaces the struction that holds Dependency(s) with the one given.
setSourceDescriptor(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the source asserted descriptor (SDUI).
setSourceDescriptor(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the source asserted descriptor (SDUI).
setSourceIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.MapObject
Sets the source asserted unique identifier (FROMSID or TOSID).
setSourceIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the source asserted unique identifier (MAPSID).
setSourceIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Sets the source asserted unique identifier (FROMSID or TOSID).
setSourceIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the source asserted unique identifier (MAPSID).
setSourceIdentifierType(SourceIdentifierType) - Method in interface gov.nih.nlm.umls.meta.AttributeContext
Sets the SourceIdentifierType for this AttributeContext.
setSourceIdentifierType(SourceIdentifierType) - Method in interface gov.nih.nlm.umls.meta.SourceIdentifierElement
Sets the SourceIdentifierType to which this element is connected.
setSourceIdentifierType(SourceIdentifierType) - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Sets the SourceIdentifierType for this AttributeContext.
setSourceIdentifierType(SourceIdentifierType) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Sets the SourceIdentifierType to which this element is connected.
setSourceIdentifierType(SourceIdentifierType) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the SourceIdentifierType to which this element is connected.
setSourceMetadata(SourceMetaDescription[]) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Sets SourceMetaDescription in the current subset.
setSourceMetadata(List) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Sets SourceMetaDescriptions in the current subset.
setSourceMetadata(SourceMetaDescription[]) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Sets SourceMetaDescription in the current subset.
setSourceMetadata(List) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Sets SourceMetaDescriptions in the current subset.
setSourceOfLabel(Source) - Method in interface gov.nih.nlm.umls.meta.Relationship
Sets the source of the relationship label (SL).
setSourceOfLabel(Source) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the source of the relationship label (SL).
setSourcePaths(String[]) - Method in class gov.nih.nlm.mms.UserConfiguration
Sets the paths to the installation sources.
setSourceRelationshipIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Relationship
Sets the source asserted relationship identifier (SRUI).
setSourceRelationshipIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the source asserted relationship identifier (SRUI).
setSourceTermTypePrecedence(SourceTermType[]) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Sets all SourceTermTypes in rank order.
setSourceTermTypePrecedence(List) - Method in interface gov.nih.nlm.umls.meta.ReleaseMetadata
Sets all SourceTermTypes in rank order.
setSourceTermTypePrecedence(SourceTermType[]) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Sets all SourceTermTypes in rank order.
setSourceTermTypePrecedence(List) - Method in class gov.nih.nlm.umls.meta.impl.ReleaseMetadataImpl
Sets all SourceTermTypes in rank order.
setSrui(String) - Method in interface gov.nih.nlm.umls.meta.Relationship
Sets the source asserted relationship identifier (SRUI).
setSrui(String) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Shorthand for RelationshipImpl.setSourceRelationshipIdentifier(String).
setState(int, boolean) - Method in class gov.nih.nlm.swing.SortButtonRenderer
Sets the state of a column for either ascending or descending sorting.
setStr(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the name (STR).
setStr(String) - Method in interface gov.nih.nlm.umls.meta.StringInfo
Sets the name (STR).
setStr(String) - Method in interface gov.nih.nlm.umls.meta.Term
Sets the name (STR).
setStr(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.setName(String).
setStr(String) - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Shorthand for StringInfoImpl.setName(String).
setStr(String) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Shorthand for TermImpl.setName(String).
setStringAttribute(StringAttribute) - Method in interface gov.nih.nlm.umls.meta.AttributeContext
Sets the StringAttribute that holds this AttributeContext.
setStringAttribute(StringAttribute) - Method in class gov.nih.nlm.umls.meta.impl.AttributeContextImpl
Sets the StringAttribute that holds this AttributeContext.
setStringAttributes(StringAttribute[]) - Method in interface gov.nih.nlm.umls.meta.TermAttribute
Replaces the StringAttributes with the ones in the specified array.
setStringAttributes(List) - Method in interface gov.nih.nlm.umls.meta.TermAttribute
Replaces the StringAttributes with the ones in the specified List.
setStringAttributes(StringAttribute[]) - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Replaces the StringAttributes with the ones in the specified array.
setStringAttributes(List) - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Replaces the StringAttributes with the ones in the specified List.
setStringContext(StringContext) - Method in interface gov.nih.nlm.umls.meta.SourceContext
Sets the StringContext that holds this SourceContext.
setStringContext(StringContext) - Method in class gov.nih.nlm.umls.meta.impl.SourceContextImpl
Sets the StringContext that holds this SourceContext.
setStringContexts(StringContext[]) - Method in interface gov.nih.nlm.umls.meta.ContextGroup
Replaces the StringContexts with the ones in the specified array.
setStringContexts(List) - Method in interface gov.nih.nlm.umls.meta.ContextGroup
replaces the StringContexts with the ones in the specified List.
setStringContexts(StringContext[]) - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Replaces the StringContexts with the ones in the specified array.
setStringContexts(List) - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
replaces the StringContexts with the ones in the specified List.
setStringIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the string identifier (SUI).
setStringIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Sets the string identifier (SUI).
setStringIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Locator
Sets the string identifier (SUI).
setStringIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.StringInfo
Sets the string identifier (SUI).
setStringIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Sets the string identifier (SUI).
setStringIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Sets the string identifier (SUI).
setStringIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the string identifier (SUI).
setStringIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Sets the string identifier (SUI).
setStringInfo(StringInfo) - Method in interface gov.nih.nlm.umls.meta.ContextGroup
Sets the StringInfo.
setStringInfo(StringInfo) - Method in interface gov.nih.nlm.umls.meta.StringAttribute
Sets the StringInfo.
setStringInfo(StringInfo) - Method in class gov.nih.nlm.umls.meta.impl.ContextGroupImpl
Sets the StringInfo.
setStringInfo(StringInfo) - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Sets the StringInfo.
setStringType(StringType) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the StringType (STT).
setStringType(StringType) - Method in interface gov.nih.nlm.umls.meta.StringInfo
Sets the StringType (STT).
setStringType(StringType) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the StringType (STT).
setStringType(StringType) - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Sets the StringType (STT).
setStt(StringType) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the StringType (STT).
setStt(StringType) - Method in interface gov.nih.nlm.umls.meta.StringInfo
Sets the StringType (STT).
setStt(StringType) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.setStringType(StringType).
setStt(StringType) - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Shorthand for StringInfoImpl.setStringType(StringType).
setSty(HierarchicalSemanticType) - Method in interface gov.nih.nlm.umls.meta.SemanticType
Sets the HierarchicalSemanticType (STY).
setSty(HierarchicalSemanticType) - Method in class gov.nih.nlm.umls.meta.impl.SemanticTypeImpl
Shorthand for SemanticTypeImpl.setSemanticType(HierarchicalSemanticType).
setSubsetDirectory(String) - Method in class gov.nih.nlm.mms.UserConfiguration
Sets the path to the subset folder.
setSubsetId(String) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the subset identifier (SUBSETUI).
setSubsetId(String) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Shorthand for MappingImpl.setSubsetIdentifier(String).
setSubsetIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the subset identifier (SUBSETUI).
setSubsetIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the subset identifier (MAPSUBSETID).
setSui(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the string identifier (SUI).
setSui(String) - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Sets the SUI.
setSui(String) - Method in interface gov.nih.nlm.umls.meta.Locator
Sets the string identifier (SUI).
setSui(String) - Method in interface gov.nih.nlm.umls.meta.StringInfo
Sets the string identifier (SUI).
setSui(String) - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Sets the SUI.
setSui(String) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.setStringIdentifier(String).
setSui(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.setStringIdentifier(String).
setSui(String) - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Shorthand for StringInfoImpl.setStringIdentifier(String).
setSuppress(Suppressible) - Method in class gov.nih.nlm.umls.meta.SourceTermType
Sets the suppressibility value (SUPPRESS).
setSuppress(Suppressible) - Method in interface gov.nih.nlm.umls.meta.SuppressibleElement
Sets the suppressibility value (SUPPRESS).
setSuppress(Suppressible) - Method in class gov.nih.nlm.umls.meta.impl.AttributeImpl
Sets the suppressibility value (SUPPRESS).
setSuppress(Suppressible) - Method in class gov.nih.nlm.umls.meta.impl.AttributeValueImpl
Sets the suppressibility value (SUPPRESS).
setSuppress(Suppressible) - Method in class gov.nih.nlm.umls.meta.impl.DefinitionImpl
Sets the suppressibility value (SUPPRESS).
setSuppress(Suppressible) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the suppressibility value (SUPPRESS).
setSuppress(Suppressible) - Method in class gov.nih.nlm.umls.meta.impl.RelationshipImpl
Sets the suppressibility value (SUPPRESS).
setSuppressibleTermgroups(List) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Sets the suppressible termgroups list with the one provided.
setSver(String) - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Sets the release date or version number of a source (SVER).
setSver(String) - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Shorthand for ComponentHistoryImpl.setVersion(String).
setSystemClasspathForJWS(Class) - Static method in class gov.nih.nlm.util.ClasspathToolkit
Sets the system classpath.
setTerm(Term) - Method in interface gov.nih.nlm.umls.meta.TermElement
Sets the Term to which this element is connected.
setTerm(Term) - Method in class gov.nih.nlm.umls.meta.impl.StringInfoImpl
Sets the parent Term.
setTerm(Term) - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Sets the Term to which this TermAttribute refers.
setTermAttribute(TermAttribute) - Method in interface gov.nih.nlm.umls.meta.StringAttribute
Sets the TermAttribute that holds this StringAttribute.
setTermAttribute(TermAttribute) - Method in class gov.nih.nlm.umls.meta.impl.StringAttributeImpl
Sets the TermAttribute that holds this StringAttribute.
setTermAttributes(TermAttribute[]) - Method in interface gov.nih.nlm.umls.meta.Term
Replaces the TermAttributes with the specified TermAttribute objects.
setTermAttributes(List) - Method in interface gov.nih.nlm.umls.meta.Term
Replaces TermAttributes with the specified List
setTermAttributes(TermAttribute[]) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Replaces the TermAttributes with the specified TermAttribute objects.
setTermAttributes(List) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Replaces TermAttributes with the specified List
setTermIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the term identifier (LUI).
setTermIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Sets the term identifier (LUI).
setTermIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.Term
Sets the term identifier (LUI).
setTermIdentifier(String) - Method in interface gov.nih.nlm.umls.meta.TermAttribute
Sets the term identifier (LUI).
setTermIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Sets the term identifier (LUI).
setTermIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the term identifier (LUI).
setTermIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Sets the term identifier (LUI).
setTermIdentifier(String) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Sets the term identifier (LUI).
setTermStatus(TermStatus) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the TermStatus (TS).
setTermStatus(TermStatus) - Method in interface gov.nih.nlm.umls.meta.Term
Sets the TermStatus (TS).
setTermStatus(TermStatus) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the TermStatus (TS).
setTermStatus(TermStatus) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Sets the TermStatus (TS).
setTermType(TermType) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the TermType (TTY).
setTermType(TermType) - Method in class gov.nih.nlm.umls.meta.SourceTermType
Sets tbe TermType.
setTermType(TermType) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Sets the TermType (TTY).
setTermVariants(StringInfo[]) - Method in interface gov.nih.nlm.umls.meta.Term
Replaces term variants with the specified StringInfo objects.
setTermVariants(List) - Method in interface gov.nih.nlm.umls.meta.Term
Replaces term variants with the specified List
setTermVariants(StringInfo[]) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Replaces term variants with the specified StringInfo objects.
setTermVariants(List) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Replaces term variants with the specified List
setText(String, AttributeSet) - Method in class gov.nih.nlm.swing.DoubleDocument
Sets the text.
setText(String) - Method in class gov.nih.nlm.swing.HtmlViewer
Sets the text to display.
setText(String, AttributeSet) - Method in class gov.nih.nlm.swing.IdealWhitespaceDocument
Sets the text of the document.
setText(String, AttributeSet) - Method in class gov.nih.nlm.swing.IntegerDocument
Sets the text.
setThreshold(double) - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Sets the rank threshold.
setThreshold(double) - Method in class gov.nih.nlm.umls.io.RichMRFilesIndexLookup
Sets the rank threshold value for searching.
setTitle(String) - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Sets the title.
setTitle(String) - Method in class gov.nih.nlm.util.JComponentPrintHandler
Sets the title.
setTitle(String) - Method in class gov.nih.nlm.util.PrintPreviewAction
Sets the title.
setTo(MapObject) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the mapped to MapObject.
setTo(MapObject) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the mapped to MapObject.
setTs(TermStatus) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the TermStatus (TS).
setTs(TermStatus) - Method in interface gov.nih.nlm.umls.meta.Term
Sets the TermStatus (TS).
setTs(TermStatus) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.setTermStatus(TermStatus).
setTs(TermStatus) - Method in class gov.nih.nlm.umls.meta.impl.TermImpl
Shorthand for TermImpl.setTermStatus(TermStatus).
setTty(TermType) - Method in interface gov.nih.nlm.umls.meta.Atom
Sets the TermType (TTY).
setTty(TermType) - Method in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
Shorthand for PlaceholderAtom.setTermType(TermType).
setTwoPagesPerSheet() - Method in class gov.nih.nlm.util.HTMLDocumentRenderer
Sets the number of pages per sheet to two (2).
setTwoPagesPerSheet() - Method in class gov.nih.nlm.util.JComponentPrintHandler
Sets the number of pages per sheet to two (2).
setType(String) - Method in class gov.nih.nlm.mms.filters.AttType
This method sets the value of the attribute type.
setType(String) - Method in class gov.nih.nlm.mms.filters.RelType
This method sets the type of the RelType.
setType(SourceIdentifierType) - Method in interface gov.nih.nlm.umls.meta.MapObject
Sets the type (FROMTYPE or TOTYPE).
setType(String) - Method in interface gov.nih.nlm.umls.meta.Mapping
Sets the type of mapping (MAPTYPE).
setType(SourceIdentifierType) - Method in class gov.nih.nlm.umls.meta.impl.MapObjectImpl
Sets the type (FROMTYPE or TOTYPE).
setType(String) - Method in class gov.nih.nlm.umls.meta.impl.MappingImpl
Sets the type of mapping (MAPTYPE).
setUi(String) - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Sets the unique identifier (UI).
setUi(String) - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Shorthand for ComponentHistoryImpl.setIdentifier(String).
setUmlsDestinationDirectory(File) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets the directory into which the UMLS will be installed.
setUmlsDirectory(File) - Method in class gov.nih.nlm.mms.InstallConfiguration
Sets the File directory that contains the Metathesaurus data.
setUn(String) - Method in interface gov.nih.nlm.umls.meta.Locator
Sets the meaning of the frequency (UN), if the frequency is set.
setUn(String) - Method in class gov.nih.nlm.umls.meta.impl.LocatorImpl
Shorthand for LocatorImpl.setFrequencyMeaning(String).
setUnfilteredConcept(Concept) - Method in class gov.nih.nlm.mms.CuiSuiAuiList
Set the initial state of the Concept before filtering.
setUserConfiguration(UserConfiguration) - Method in class gov.nih.nlm.mms.MetamorphoSys
Sets the UserConfiguration.
setUsingView(boolean) - Static method in class gov.nih.nlm.mms.MMSToolkit
Sets the "using view" flag.
setValue(String) - Method in class gov.nih.nlm.umls.meta.ContentView
Sets the value of the content view flag.
setValue(long) - Method in class gov.nih.nlm.umls.meta.ContentView
Sets the value of the content view flag.
setValue(String) - Method in interface gov.nih.nlm.umls.meta.IndexEntry
Set the String being indexed
setValue(String) - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Set the String being indexed
setValueAt(Object, int, int) - Method in class gov.nih.nlm.swing.TableMap
Sets the value for a cell in the underlying mode.
setValueAt(Object, int, int) - Method in class gov.nih.nlm.swing.TableSorter
Sets the value at the specified row and column from the underlying model.
setVer(String) - Method in interface gov.nih.nlm.umls.meta.AtomMapping
Sets the release version in which the indicated change took place (VER).
setVer(String) - Method in interface gov.nih.nlm.umls.meta.ConceptMapping
Sets the last release version in which the CUI1 was valid (VER).
setVer(String) - Method in class gov.nih.nlm.umls.meta.impl.AtomMappingImpl
Sets the release version in which the indicated change took place (VER).
setVer(String) - Method in class gov.nih.nlm.umls.meta.impl.ConceptMappingImpl
Shorthand for ConceptMappingImpl.setLastReleaseVersion(String)
setVersion(String) - Method in interface gov.nih.nlm.umls.meta.ComponentHistory
Sets the release date or version number of a source (SVER).
setVersion(String) - Method in class gov.nih.nlm.umls.meta.impl.ComponentHistoryImpl
Sets the release date or version number of a source (SVER).
setVisible(boolean) - Method in class gov.nih.nlm.swing.GlassComponent
Causes the component to become visible/invisible.
setXc(String) - Method in interface gov.nih.nlm.umls.meta.ContextMember
Sets the "has child flag" value (XC).
setXc(String) - Method in class gov.nih.nlm.umls.meta.impl.ContextMemberImpl
Sets the "has child flag" value (XC).
showDialog(Component, String, String, String) - Static method in class gov.nih.nlm.swing.MultiLineInputDialog
Presents a MultiLineInputDialog to the user.
showListMultipleMode(Component, Object, String, Object[], Object) - Static method in class gov.nih.nlm.swing.ListDialog
Presents the user with a ListDialog containing a list of choices.
showListMultipleMode(Component, Object, String, Object[], Object[]) - Static method in class gov.nih.nlm.swing.ListDialog
Presents the user with a ListDialog containing a list of choices.
showListSingleMode(Component, Object, String, Object[], Object) - Static method in class gov.nih.nlm.swing.ListDialog
Presents the user with a ListDialog containing a list of choices.
showLogAndExitToWelcomeGUI(String, File) - Static method in class gov.nih.nlm.mms.MMSToolkit
Cleans up system resources, shows the log file, then exits.
showOptions() - Method in interface gov.nih.nlm.mms.GUIConfigurable
Presents an advanced options GUI to the user.
showOptions() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Presents an advanced options GUI to the user.
showOptions() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Presents an advanced options GUI to the user.
showOptions() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Presents an advanced options GUI to the user.
showOptions() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Presents an advanced options GUI to the user.
showOptions() - Method in class gov.nih.nlm.mms.browser.CuiSearchFinder
Presents an advanced options GUI to the user.
showOptions() - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Presents an advanced options GUI to the user.
showOptions() - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Presents an advanced options GUI to the user.
showOptions() - Method in class gov.nih.nlm.mms.browser.TreeBrowserFinder
Presents an advanced options GUI to the user.
showOptions() - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Presents an advanced options GUI to the user.
showOptions() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
Presents an advanced options GUI to the user.
showOptions() - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Shows an advanced options GUI to the user.
showOptions() - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Show Options GUI.
showOptions() - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveFilter
Presents an advanced options GUI to the user.
showOptions() - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Shows an advanced options GUI to the user.
shuttlesort(int[], int[], int, int) - Method in class gov.nih.nlm.swing.TableSorter
This is a home-grown implementation which we have not had time to research - it may perform poorly in some circumstances.
sort(Object) - Method in class gov.nih.nlm.swing.TableSorter
Sorts the table.
sort(String) - Static method in class gov.nih.nlm.util.SystemToolkit
Sort the specified file.
sort(String, ProgressMonitor) - Static method in class gov.nih.nlm.util.SystemToolkit
Sort the specified file.
sort(String, boolean) - Static method in class gov.nih.nlm.util.SystemToolkit
Sort the specified file (optionally uniquely).
sort(String, boolean, ProgressMonitor) - Static method in class gov.nih.nlm.util.SystemToolkit
Sort the specified file (optionally uniquely).
sort(String, Comparator) - Static method in class gov.nih.nlm.util.SystemToolkit
Sort the specified file using the specified Comparator.
sort(String, Comparator, boolean) - Static method in class gov.nih.nlm.util.SystemToolkit
Sort the specified file using the specified Comparator and optionally sort uniquely.
sort(String, Comparator, boolean, ProgressMonitor) - Static method in class gov.nih.nlm.util.SystemToolkit
Sort the specified file using the specified Comparator and optionally sort uniquely.
sortByColumn(int) - Method in class gov.nih.nlm.swing.TableSorter
Sorts table by a column (ascending by default).
sortByColumn(int, boolean) - Method in class gov.nih.nlm.swing.TableSorter
Sorts table by a column.
sortMRCXT(MRCXTBuilderGUI) - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderOutputStream
Sorts the MRCXT.RRF file.
source - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
sourcesToRemoveChanged(SourcesToRemoveEvent) - Method in class gov.nih.nlm.mms.MetamorphoSys
This method is called when there is a change to the selections on the sources to exclude tab.
sourcesToRemoveChanged(SourcesToRemoveEvent) - Method in interface gov.nih.nlm.mms.SourcesToRemoveListener
Informs the listener of a change in the sources to remove list.
sourcesToRemoveChanged(SourcesToRemoveEvent) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
This method is called when there is a change to the selections on the sources to exclude tab.
sourcesToRemoveChanged(SourcesToRemoveEvent) - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
Listens for changes in the sources to remove list.
sourcesToRemoveChanged(SourcesToRemoveEvent) - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
This method is called when there is a change to the selections on the sources to exclude tab.
sourcesToRemoveChanged(SourcesToRemoveEvent) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveFilter
This method is called when there is a change to the selections on the sources to exclude tab.
sourcesToRemoveChanged(SourcesToRemoveEvent) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupFilter
Resets the removability table when the user tabs between filters.
sourcesToRemoveChanged(SourcesToRemoveEvent) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsFilter
Resets the suppressiblity table when the user tabs between filters.
sources_to_remove - Variable in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
 
split(String, String) - Static method in class gov.nih.nlm.util.FieldedStringTokenizer
Splits a line on delimiter characters and returns a String[] of the tokens.
split(String, String, int) - Static method in class gov.nih.nlm.util.FieldedStringTokenizer
Splits a line on delimiter characters when the number of fields is known in advance and returns a string array of the tokens.
split(String, String, int, String[]) - Static method in class gov.nih.nlm.util.FieldedStringTokenizer
Splits a line on delimiter characters when the number of fields is known in advance and populates the specified String[].
splitString(String, int) - Static method in class gov.nih.nlm.mms.MMSToolkit
Splits a string on word boundaries so that each element of the string array returned represents a "line" of the original string that is no longer than the specified max line length.
startElement(String, String, String, Attributes) - Method in class gov.nih.nlm.util.ObjectXMLSerializer
Handles opening tags.
stateChanged(ChangeEvent) - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Responds to a user switching tabs in the tabbed pane.
stateChanged(ChangeEvent) - Method in class gov.nih.nlm.mms.browser.FinderManager
Responds to a user switching tabs in the tabbed pane.
stateChanged(ChangeEvent) - Method in class gov.nih.nlm.mms.browser.ReportsManager
Responds to a user switching tabs in the tabbed pane.
str - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
stt - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
subset(Concept) - Method in class gov.nih.nlm.mms.MetamorphoSys
Subsets the Concept.
subset(Source) - Method in class gov.nih.nlm.mms.MetamorphoSys
Sets if Source is in current version.
subset() - Method in class gov.nih.nlm.mms.MetamorphoSys
Subsets the Metathesaurus.
subsetDirectoryOpened(File) - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Handles opening of a source directory.
subsetDirectoryOpened(File) - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Handles opening of a source directory.
subsetDirectoryOpened(File) - Method in interface gov.nih.nlm.mms.browser.ConceptView
Handles opening of a source directory.
subsetDirectoryOpened(File) - Method in class gov.nih.nlm.mms.browser.ExpandableConceptView
Handles opening of a source directory.
subsetDirectoryOpened(File) - Method in class gov.nih.nlm.mms.browser.ExpandableRawView
Handles opening of a source directory.
subsetDirectoryOpened(File) - Method in interface gov.nih.nlm.mms.browser.Finder
Handles opening of a source directory.
subsetDirectoryOpened(File) - Method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
Handles opening of a source directory.
subsetDirectoryOpened(File) - Method in class gov.nih.nlm.mms.browser.TreeBrowserFinder
Handles opening of a source directory.
subsetDirectoryOpened(File) - Method in class gov.nih.nlm.mms.browser.WordSearchFinder
Handles opening of a source directory.
subsetDirectoryOpened(File) - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderGUI
Handles opening of a source directory.
subset_content - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
 
subset_content - Variable in class gov.nih.nlm.mms.filters.AbstractFilter
 
sui - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
sui_to_cui_set - Variable in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
 
sui_to_cui_set - Variable in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
 
suppress - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
swap(int, int) - Method in class gov.nih.nlm.swing.TableSorter
Swap two elements of the map.

T

TableMap - class gov.nih.nlm.swing.TableMap.
In a chain of data manipulators some behaviour is common.
TableMap() - Constructor for class gov.nih.nlm.swing.TableMap
 
TableSortEvent - class gov.nih.nlm.swing.TableSortEvent.
Represents an event used with SortableJTable to inform users of the table that a sort is taking place.
TableSortEvent(Object) - Constructor for class gov.nih.nlm.swing.TableSortEvent
Instantiates a TableSortEvent.
TableSortListener - interface gov.nih.nlm.swing.TableSortListener.
Generically represents a listener for responding to SortableJTable TableSortEvents.
TableSorter - class gov.nih.nlm.swing.TableSorter.
Sorter for TableModels.
TableSorter() - Constructor for class gov.nih.nlm.swing.TableSorter
Instantiates an empty TableSorter.
TableSorter(TableModel) - Constructor for class gov.nih.nlm.swing.TableSorter
Instantiates a TableSorter with the specified model.
Term - interface gov.nih.nlm.umls.meta.Term.
Represents Concept term information.
TermAttribute - interface gov.nih.nlm.umls.meta.TermAttribute.
Represents information about attributes sharing the same Term.
TermAttributeImpl - class gov.nih.nlm.umls.meta.impl.TermAttributeImpl.
Default implementation of the TermAttribute interface.
TermAttributeImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Instantiates an empty TermAttribute.
TermAttributeImpl(TermAttribute) - Constructor for class gov.nih.nlm.umls.meta.impl.TermAttributeImpl
Instantiates a TermAttribute from the specified TermAttribute.
TermElement - interface gov.nih.nlm.umls.meta.TermElement.
Represents information about a data element connected to an Term.
TermImpl - class gov.nih.nlm.umls.meta.impl.TermImpl.
Default implementation of the Term interface.
TermImpl() - Constructor for class gov.nih.nlm.umls.meta.impl.TermImpl
Instantiates an empty Term.
TermImpl(Term) - Constructor for class gov.nih.nlm.umls.meta.impl.TermImpl
Instantiates a Term from the specified Term.
TermStatus - class gov.nih.nlm.umls.meta.TermStatus.
Represents an term status.
TermStatus() - Constructor for class gov.nih.nlm.umls.meta.TermStatus
Instantiates an empty TermStatus.
TermType - class gov.nih.nlm.umls.meta.TermType.
Represents an Term Type.
TermType() - Constructor for class gov.nih.nlm.umls.meta.TermType
Instantiates an empty TermType.
TermTypeGroup - class gov.nih.nlm.umls.meta.TermTypeGroup.
Represents a grouping of TermTypes.
TermTypeGroup() - Constructor for class gov.nih.nlm.umls.meta.TermTypeGroup
Instantiates an empty TermTypeGroup.
TreeBrowserFinder - class gov.nih.nlm.mms.browser.TreeBrowserFinder.
Represents a Finder that enables user to choose concepts for display from an HTML document formatted to look like a tree.
TreeBrowserFinder() - Constructor for class gov.nih.nlm.mms.browser.TreeBrowserFinder
Instantiates a TreeBrowserFinder.
TreeBrowserFinder.PopupListener - class gov.nih.nlm.mms.browser.TreeBrowserFinder.PopupListener.
 
TreeBrowserFinder.TreeBrowserFinderOptionsGUI - class gov.nih.nlm.mms.browser.TreeBrowserFinder.TreeBrowserFinderOptionsGUI.
Options GUI for TreeBrowserFinder.
TreeBrowserFinder.TreeBrowserFinderOptionsGUI(TreeBrowserFinder) - Constructor for class gov.nih.nlm.mms.browser.TreeBrowserFinder.TreeBrowserFinderOptionsGUI
Instantiates a TreeBrowserFinderOptionsGUI
TwoPagePrintable - class gov.nih.nlm.util.TwoPagePrintable.
Handles printing of the contents of a JEditorPane using two pages per sheet of paper.
TwoPagePrintable(JEditorPane, String) - Constructor for class gov.nih.nlm.util.TwoPagePrintable
Instantiates the TwoPagePrintable using the specified JEditorPane and String title.
tableChanged(TableModelEvent) - Method in class gov.nih.nlm.swing.SortableJTable
Handles table change events.
tableChanged(TableModelEvent) - Method in class gov.nih.nlm.swing.TableMap
Forwards a table changed event to the table.
tableChanged(TableModelEvent) - Method in class gov.nih.nlm.swing.TableSorter
Handles the table change event.
tableSortFinished(TableSortEvent) - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Handle finish of table sorting.
tableSortFinished(TableSortEvent) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupListSelectionListener
Handle finish of table sorting.
tableSortFinished(TableSortEvent) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsListSelectionListener
Handle finish of table sorting.
tableSortFinished(TableSortEvent) - Method in interface gov.nih.nlm.swing.TableSortListener
Informs the listener that table sorting has completed.
tableSortStarted(TableSortEvent) - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Handle start of table sorting.
tableSortStarted(TableSortEvent) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupListSelectionListener
Handle start of table sorting.
tableSortStarted(TableSortEvent) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsListSelectionListener
Handle start of table sorting.
tableSortStarted(TableSortEvent) - Method in interface gov.nih.nlm.swing.TableSortListener
Informs the listener that table sorting has begun.
target_files - Static variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
 
target_files - Static variable in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
 
target_to_output_stream - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
 
terminateOperation() - Method in class gov.nih.nlm.swing.FindDialog
Terminate the current operation
this_concept - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
this_concept - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
timeDifference(Date, Date) - Static method in class gov.nih.nlm.mms.MMSToolkit
Compute the time difference between the specified parameters.
timeToString(long) - Static method in class gov.nih.nlm.mms.MMSToolkit
Convert a long representing a time to a string representing hours, minutes, and seconds.
title - Variable in class gov.nih.nlm.util.HTMLDocumentRenderer
 
title - Variable in class gov.nih.nlm.util.JComponentPrintHandler
 
title - Variable in class gov.nih.nlm.util.OnePagePrintable
 
title - Variable in class gov.nih.nlm.util.PrintPreviewAction
 
title - Variable in class gov.nih.nlm.util.TwoPagePrintable
 
toHexString(byte[]) - Static method in class gov.nih.nlm.util.SystemToolkit
Converts a byte[] to a hex string.
toString() - Method in class gov.nih.nlm.mms.Dependency
Returns a String representation of the dependency.
toString() - Method in class gov.nih.nlm.mms.browser.WordSearchFinderOptionsGUI.CuiSortOrderComparator
Returns the display name for the Comparator.
toString() - Method in class gov.nih.nlm.mms.browser.WordSearchFinderOptionsGUI.StringSortOrderComparator
 
toString() - Method in class gov.nih.nlm.mms.filters.AttType
Get a string representation of the AttType that includes the two fields that make the AttType unique.
toString() - Method in class gov.nih.nlm.mms.filters.RelType
Returns a String representation of the RelType that includes the two fields that make the RelType unique.
toString() - Method in class gov.nih.nlm.umls.meta.AbstractExpandedForm
Return a string representation for an Object consisting of its subkey.
toString() - Method in class gov.nih.nlm.umls.meta.Concept.ByCUIComparator
Returns the display name for the Comparator.
toString() - Method in class gov.nih.nlm.umls.meta.Concept.ByPreferredNameComparator
 
toString() - Method in class gov.nih.nlm.umls.meta.ContentView
Returns String representation.
toString() - Method in class gov.nih.nlm.umls.meta.Source
Returns the versioned source abbreviation (VSAB).
toString() - Method in class gov.nih.nlm.umls.meta.impl.IndexEntryImpl
Returns a String representation of the index entry.
toXML(Object) - Method in class gov.nih.nlm.util.ObjectXMLSerializer
Converts an object to an XML representation.
toXML(Object, String) - Method in class gov.nih.nlm.util.ObjectXMLSerializer
Converts an object to an XML representation with the specified level of indenting.
to_rsab - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
to_vsab - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
tokens - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptInputStream
 
tokens - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptInputStream
 
ts - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 
tty - Variable in class gov.nih.nlm.umls.meta.impl.PlaceholderAtom
 

U

UP - Static variable in class gov.nih.nlm.swing.BevelArrowIcon
 
UP - Static variable in class gov.nih.nlm.swing.SortButtonRenderer
 
UTF8InputStreamReader - class gov.nih.nlm.util.UTF8InputStreamReader.
An InputStreamReader that ignores the first 3 bytes if they are the UTF8 Byte Order Mark (BOM) bytes.
UTF8InputStreamReader(BufferedInputStream) - Constructor for class gov.nih.nlm.util.UTF8InputStreamReader
Instantiates an UTF8InputStreamReader.
UTF8OutputStreamWriter - class gov.nih.nlm.util.UTF8OutputStreamWriter.
An OutputStreamWriter that can make the first 3 bytes the UTF8 Byte Order Mark (BOM) bytes.
UTF8OutputStreamWriter(OutputStream, boolean) - Constructor for class gov.nih.nlm.util.UTF8OutputStreamWriter
Instantiates an UTF8OutputStreamWriter.
UTF8OutputStreamWriter(OutputStream) - Constructor for class gov.nih.nlm.util.UTF8OutputStreamWriter
Instantiates an UTF8OutputStreamWriter.
UndoAction - class gov.nih.nlm.mms.UndoAction.
Unperforms an action.
UndoAction(MetamorphoSysGUI) - Constructor for class gov.nih.nlm.mms.UndoAction
Instantiates an UndoAction.
UndoHandler - interface gov.nih.nlm.mms.UndoHandler.
Generically represents a handler for undoing a certain action.
UserConfiguration - class gov.nih.nlm.mms.UserConfiguration.
Represents a set of user configurations, including all of the relevant filter configuration data.
UserConfiguration(File) - Constructor for class gov.nih.nlm.mms.UserConfiguration
Instantiates a UserConfiguration from the specified properties File.
UserConfiguration(Properties) - Constructor for class gov.nih.nlm.mms.UserConfiguration
Instantiates a UserConfiguration from the specified Properties.
undo(Object, Object) - Method in class gov.nih.nlm.mms.EnableFilterUndoHandler
Performs the undo operation and prepares the redo stack.
undo(Object, Object) - Method in class gov.nih.nlm.mms.GUIConfigurableUndoHandler
Performs the undo operation.
undo(Object, Object) - Method in class gov.nih.nlm.mms.InputStreamUndoHandler
Performs the undo operation.
undo(Object, Object) - Method in class gov.nih.nlm.mms.OutputStreamUndoHandler
Performs the undo operation.
undo(Object, Object) - Method in interface gov.nih.nlm.mms.UndoHandler
Performs the undo operation
unfreezePane(int) - Method in class gov.nih.nlm.swing.XTabbedPane
Indicates that the tabbed pane at the given index no longer should be frozen and it should be permitted to be dragged and dropped.
unzip(String, String, String, Frame) - Static method in class gov.nih.nlm.swing.SwingToolkit
Unzips the specified file into the specified directory using the specified operating system command.
unzip(String, String, String, String, Frame) - Static method in class gov.nih.nlm.swing.SwingToolkit
Unzips the specified file into the specified directory using the specified operating system command.
unzip(String, String, String, ProgressMonitor) - Static method in class gov.nih.nlm.util.SystemToolkit
Unzips the specified file into the specified directory using.
unzip(String, String, String, String, ProgressMonitor) - Static method in class gov.nih.nlm.util.SystemToolkit
Unzips the specified file into the specified directory using the specified operating system command.
unzipInternal(String, String, String) - Static method in class gov.nih.nlm.util.SystemToolkit
Unzips the specified file into the specified directory using pure java.
unzipInternal(String, String, String, ProgressMonitor) - Static method in class gov.nih.nlm.util.SystemToolkit
Unzips the specified file into the specified directory using pure java.
updateProgress(ProgressEvent) - Method in class gov.nih.nlm.mms.MMSProgressMonitor
Update progress.
updateProgress(ProgressEvent) - Method in interface gov.nih.nlm.util.ProgressListener
 
user_config - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
 
user_config - Variable in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
 
user_config - Variable in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveFilter
 
user_configuration - Variable in class gov.nih.nlm.mms.ConceptInputStreamAction
 
user_configuration - Variable in class gov.nih.nlm.mms.ConceptOutputStreamAction
 
user_configuration - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
 
user_configuration - Variable in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
 
user_configuration - Variable in class gov.nih.nlm.mms.browser.AbstractConceptView
 
user_configuration - Variable in class gov.nih.nlm.mms.browser.AbstractFinder
 
user_configuration - Variable in class gov.nih.nlm.mms.browser.ConceptListManager
 
user_configuration - Variable in class gov.nih.nlm.mms.filters.AbstractFilter
 
usingView() - Static method in class gov.nih.nlm.swing.SwingToolkit
Indicates whether or not the application is using a GUI.

V

VIEW - Static variable in interface gov.nih.nlm.swing.SwingConstants
Name of the property indicating whether or not user interaction will take place in GUI windows or on the command line.
ValidateDistributionAction - class gov.nih.nlm.mms.ValidateDistributionAction.
Used for the File->Validate menu of the WelcomeGUI.
ValidateDistributionAction() - Constructor for class gov.nih.nlm.mms.ValidateDistributionAction
Instantiates a ValidateDistributionAction.
ValidateDistributionAction.ValidateDistributionGUI - class gov.nih.nlm.mms.ValidateDistributionAction.ValidateDistributionGUI.
GUI displayed by ValidateDistributionAction
ValidateDistributionAction.ValidateDistributionGUI() - Constructor for class gov.nih.nlm.mms.ValidateDistributionAction.ValidateDistributionGUI
Instantiates the GUI.
Version - class gov.nih.nlm.mms.Version.
The Version class aggregates change information for the gov.nih.nlm.mms package.
Version() - Constructor for class gov.nih.nlm.mms.Version
 
Version - class gov.nih.nlm.mms.browser.Version.
The Version class aggregates change information for the gov.nih.nlm.mms.browser package.
Version() - Constructor for class gov.nih.nlm.mms.browser.Version
 
Version - class gov.nih.nlm.mms.cxt.Version.
The Version class aggregates change information for the gov.nih.nlm.mms.cxt package.
Version() - Constructor for class gov.nih.nlm.mms.cxt.Version
 
Version - class gov.nih.nlm.mms.filters.Version.
The Version class aggregates change information for the gov.nih.nlm.mms.filters package.
Version() - Constructor for class gov.nih.nlm.mms.filters.Version
 
Version - class gov.nih.nlm.swing.Version.
The Version class aggregates change information for the gov.nih.nlm.swing package.
Version() - Constructor for class gov.nih.nlm.swing.Version
 
Version - class gov.nih.nlm.umls.Version.
The Version class aggregates change information for the gov.nih.nlm.umls package.
Version() - Constructor for class gov.nih.nlm.umls.Version
 
Version - class gov.nih.nlm.umls.io.Version.
The Version class aggregates change information for the gov.nih.nlm.umls.io package.
Version() - Constructor for class gov.nih.nlm.umls.io.Version
 
Version - class gov.nih.nlm.umls.meta.Version.
The Version class aggregates change information for the gov.nih.nlm.umls.meta package.
Version() - Constructor for class gov.nih.nlm.umls.meta.Version
 
Version - class gov.nih.nlm.umls.meta.impl.Version.
The Version class aggregates change information for the gov.nih.nlm.umls.meta.impl package.
Version() - Constructor for class gov.nih.nlm.umls.meta.impl.Version
 
Version - class gov.nih.nlm.util.Version.
The Version class aggregates change information for the gov.nih.nlm.util package.
Version() - Constructor for class gov.nih.nlm.util.Version
 
validate() - Method in class gov.nih.nlm.mms.ChecksumValidator
Validates the user selections for directories based on file length checks and MD5 checksums.
validate() - Method in interface gov.nih.nlm.mms.GUIConfigurable
Indicates whether or not the validation rules have passed.
validate() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Indicates whether or not the GUIConfigurable is valid.
validate() - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
This method indicates whether or not the GUIConfigurable is valid.
validate() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Indicates whether or not the GUIConfigurable is valid.
validate() - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Indicates whether or not the GUIConfigurable is valid.
validate() - Method in class gov.nih.nlm.mms.browser.AbstractConceptView
Indicates whether or not the validation rules have passed.
validate() - Method in class gov.nih.nlm.mms.browser.AbstractFinder
Indicates whether or not the validation rules have passed.
validate() - Method in class gov.nih.nlm.mms.filters.AbstractFilter
This method is the default method for filters that don't check for validity and it returns true indicating a valid filter.
validate() - Method in class gov.nih.nlm.mms.filters.ContentViewFilter
This method is the default method for filters that don't check for validity and it returns true indicating a valid filter.
validate() - Method in class gov.nih.nlm.mms.filters.PrecedenceFilter
This method indicates that this filter is only valid when any rows that have been cut have also been pasted.
validateByteCountsOnly() - Method in class gov.nih.nlm.mms.ChecksumValidator
Validates the user selections for directories based on file length checks.
validateGUIConfigurables() - Method in class gov.nih.nlm.mms.MetamorphoSysGUI
Confirms that GUIConfigurables are in valid states.
validateSourcePath(String) - Method in interface gov.nih.nlm.mms.MetamorphoSysInputStream
Validates the source path.
validateSourcePath(String) - Method in class gov.nih.nlm.mms.NLMFileMetamorphoSysInputStream
Validates the source path.
validateSourcePath(String) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Validates the source path.
validateSourcePath(String) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Validates the source path.
validateSourcePaths(String[]) - Method in interface gov.nih.nlm.mms.MetamorphoSysInputStream
Validates the source paths.
validateSourcePaths(String[]) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Validates the source paths.
validateSourcePaths(String[]) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Validates the source paths.
validateVersion(String) - Method in interface gov.nih.nlm.mms.MetamorphoSysInputStream
Attempts to determine the version of the release being used and validate it against the version from the properties file.
validateVersion(String) - Method in class gov.nih.nlm.mms.NLMFileMetamorphoSysInputStream
Attempts to determine the version of the release being used and validate it against the version from the properties file.
validateVersion(String) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
Attempts to determine the version of the release being used and validate it against the version from the properties file.
validateVersion(String) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
Attempts to determine the version of the release being used and validate it against the version from the properties file.
validateVersions(String[]) - Method in interface gov.nih.nlm.mms.MetamorphoSysInputStream
For each source path it attempts to determine the version of the release being used and validate it against the version from the properties file.
validateVersions(String[]) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
For each source path it attempts to determine the version of the release being used and validate it against the version from the properties file.
validateVersions(String[]) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
For each source path it attempts to determine the version of the release being used and validate it against the version from the properties file.
validate_msg - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysInputStream
 
validate_msg - Variable in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
 
validate_msg - Variable in class gov.nih.nlm.mms.RichMRMetamorphoSysInputStream
 
validate_msg - Variable in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
 
valueChanged(ListSelectionEvent) - Method in class gov.nih.nlm.mms.filters.AttributeTypesToRemoveListSelectionListener
Method that recognizes a ListSelectionEvent and responds by going through logic to determine if other AttType rows should be selected as well.
valueChanged(ListSelectionEvent) - Method in class gov.nih.nlm.mms.filters.LanguagesToRemoveFilter
Sets the list of languages to be excluded when selection changes.
valueChanged(ListSelectionEvent) - Method in class gov.nih.nlm.mms.filters.RelationshipTypesToRemoveListSelectionListener
Method that recognizes a ListSelectionEvent and responds by going through logic to determine if other relationship type rows should be selected as well.
valueChanged(ListSelectionEvent) - Method in class gov.nih.nlm.mms.filters.RemoveByTermgroupListSelectionListener
Listens for changes in the list and validates them.
valueChanged(ListSelectionEvent) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveFilter
Sets the list of semantic_types to removed when selection changes.
valueChanged(ListSelectionEvent) - Method in class gov.nih.nlm.mms.filters.SemanticTypesToRemoveListSelectionListener
Handles ListSelectionEvents.
valueChanged(ListSelectionEvent) - Method in class gov.nih.nlm.mms.filters.SourcesToRemoveListSelectionListener
Method that recognizes a ListSelectionEvent and responds by going through logic to determine if related sources should be selected as well.
valueChanged(ListSelectionEvent) - Method in class gov.nih.nlm.mms.filters.SuppressibleTermgroupsListSelectionListener
Listens for changes in the list and validates them.
valueChanged(ListSelectionEvent) - Method in class gov.nih.nlm.swing.SortableJTable
Called when the list selection changes.
values(Object) - Method in class gov.nih.nlm.util.MultiMap
Returns the value for the specified "top" key.
versioned_output - Variable in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
 
versioned_output - Variable in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
 

W

WelcomeGUI - class gov.nih.nlm.mms.WelcomeGUI.
Application entry point for GUI users.
WordSearchFinder - class gov.nih.nlm.mms.browser.WordSearchFinder.
Finds Concepts via word searches.
WordSearchFinder() - Constructor for class gov.nih.nlm.mms.browser.WordSearchFinder
Instantiates a WordSearchFinder.
WordSearchFinder.BackwardAction - class gov.nih.nlm.mms.browser.WordSearchFinder.BackwardAction.
 
WordSearchFinder.BackwardAction() - Constructor for class gov.nih.nlm.mms.browser.WordSearchFinder.BackwardAction
Instantiates a BackwardAction.
WordSearchFinder.ForwardAction - class gov.nih.nlm.mms.browser.WordSearchFinder.ForwardAction.
 
WordSearchFinder.ForwardAction() - Constructor for class gov.nih.nlm.mms.browser.WordSearchFinder.ForwardAction
Instantiates a ForwardAction.
WordSearchFinder.PopupListener - class gov.nih.nlm.mms.browser.WordSearchFinder.PopupListener.
 
WordSearchFinderOptionsGUI - class gov.nih.nlm.mms.browser.WordSearchFinderOptionsGUI.
Options GUI for WordSearchFinder.
WordSearchFinderOptionsGUI(WordSearchFinder) - Constructor for class gov.nih.nlm.mms.browser.WordSearchFinderOptionsGUI
Instantiates a WordSearchFinderOptionsGUI.
WordSearchFinderOptionsGUI.CuiSortOrderComparator - class gov.nih.nlm.mms.browser.WordSearchFinderOptionsGUI.CuiSortOrderComparator.
Concept Comparator based on CUI.
WordSearchFinderOptionsGUI.CuiSortOrderComparator() - Constructor for class gov.nih.nlm.mms.browser.WordSearchFinderOptionsGUI.CuiSortOrderComparator
Instantiates a CuiSortOrderComparator.
WordSearchFinderOptionsGUI.StringSortOrderComparator - class gov.nih.nlm.mms.browser.WordSearchFinderOptionsGUI.StringSortOrderComparator.
Concept Comparator based on preferred name.
WordSearchFinderOptionsGUI.StringSortOrderComparator() - Constructor for class gov.nih.nlm.mms.browser.WordSearchFinderOptionsGUI.StringSortOrderComparator
Instantiates a comparator.
wait_cursor - Static variable in class gov.nih.nlm.mms.DefaultSubsetSelectionGUI
 
wait_cursor - Static variable in class gov.nih.nlm.mms.filters.SourcesToRemoveOptionsGUI
 
windowActivated(WindowEvent) - Method in class gov.nih.nlm.util.PrintPreviewAction
 
windowClosed(WindowEvent) - Method in class gov.nih.nlm.util.PrintPreviewAction
 
windowClosing(WindowEvent) - Method in class gov.nih.nlm.util.PrintPreviewAction
 
windowDeactivated(WindowEvent) - Method in class gov.nih.nlm.util.PrintPreviewAction
 
windowDeiconified(WindowEvent) - Method in class gov.nih.nlm.util.PrintPreviewAction
 
windowIconified(WindowEvent) - Method in class gov.nih.nlm.util.PrintPreviewAction
 
windowOpened(WindowEvent) - Method in class gov.nih.nlm.util.PrintPreviewAction
 
writeConcept(Concept) - Method in interface gov.nih.nlm.mms.ConceptOutputStream
Write a Concept to the output stream.
writeConcept(Concept) - Method in interface gov.nih.nlm.umls.io.ConceptOutputStream
Write a Concept to the output stream.
writeConcept(Concept) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
Writes a Concept to the appropriate MR files.
writeConcept(Concept) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Writes the specified Concept.
writeConcept(Concept) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Writes a Concept to the appropriate MR files.
writeConcept(Concept) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Writes a Concept to the appropriate MR files.
writeCuiToFile() - Method in class gov.nih.nlm.mms.browser.RRFBrowserGUI
Saves BrowserState to dir_saved.txt file so that history and settings can be reset on future runs of the application.
writeFileColumnStats() - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
This method computes the file and columns statistics for the MRFILES and MRCOLS tables themselves.
writeFileColumnStats() - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
This method computes the file and columns statistics for the MRFILES.RRF and MRCOLS.RRF files themselves.
writeIndexEntry(IndexEntry) - Method in interface gov.nih.nlm.mms.ConceptOutputStream
Write an IndexEntry to the output stream.
writeIndexEntry(IndexEntry) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Writes index entries with the "remove utf8" settings in mind.
writeIndexEntry(IndexEntry) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Writes index entries with the "remove utf8" settings in mind.
writeIndexEntry(IndexEntry) - Method in interface gov.nih.nlm.umls.io.MetathesaurusOutputStream
Writes an IndexEntry to the output stream.
writeIndexEntry(IndexEntry) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Writes an IndexEntry to the appropriate MR index file.
writeIndexEntry(IndexEntry) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Writes an IndexEntry to the appropriate MR index file.
writeMRAUI(ReleaseMetadata) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Writes a line to the MRAUI.RRF file.
writeMRCOC(Concept) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Writes MRCOC.RRF entries for a Concept
writeMRCON(Concept) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
Writes MRCON entries for a Concept
writeMRCONSO(Concept) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Writes MRCONSO.RRF entries for a Concept.
writeMRCONSO(Concept) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Writes MRCONSO.RRF entries for a Concept
writeMRCUI(ReleaseMetadata) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Writes the specified ReleaseMetadata to MRCUI.
writeMRCUI(ReleaseMetadata) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Writes a line to the MRCUI.RRF file.
writeMRCXT(Concept) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Writes MRCXT entries for a Concept.
writeMRCXT(Concept) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Writes MRCXT entries for a Concept.
writeMRCXT(MRCXTBuilderGUI) - Method in class gov.nih.nlm.mms.cxt.MRCXTBuilderOutputStream
Writes MRCXT.RRF
writeMRCXT(Concept) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
Writes MRCXT entries for a Concept
writeMRCXT(Concept) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Writes MRCXT.RRF entries for a Concept
writeMRDEF(Concept) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Writes MRDEF entries for a Concept.
writeMRDEF(Concept) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Writes MRDEF entries for a Concept.
writeMRDEF(Concept) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
Writes MRDEF entries for a Concept
writeMRDEF(Concept) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Writes MRDEF.RRF entries for a Concept
writeMRDOC(ReleaseMetadata) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Write release_info lines to the MRDOC.RRF file, ensuring no duplicates.
writeMRDOC(ReleaseMetadata) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Write a line to the MRDOC.RRF file.
writeMRHIER(Concept) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Writes MRHIER entries for a Concept
writeMRHIST(Concept) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Writes MRHIST.RRF entries for a Concept
writeMRMAP(Concept) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Writes MRMAP.RRF entries for a Concept
writeMRRANK(ReleaseMetadata) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Write MRRANK.
writeMRRANK(ReleaseMetadata) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Writes a line to the MRRANK.RRF file.
writeMRREL(Concept) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Writes MRREL.RRF entries for a Concept
writeMRSAB(ReleaseMetadata) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Writes MRSAB.
writeMRSAB(ReleaseMetadata) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Write a line to the MRSAB.RRF file.
writeMRSAT(Concept) - Method in class gov.nih.nlm.mms.OriginalMRMetamorphoSysOutputStream
Writes MRSAT entries for a Concept.
writeMRSAT(Concept) - Method in class gov.nih.nlm.mms.RichMRMetamorphoSysOutputStream
Writes MRSAT entries for a Concept.
writeMRSAT(Concept) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
Writes MRSAT entries for a Concept
writeMRSAT(Concept) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Writes MRSAT.RRF entries for a Concept
writeMRSMAP(Concept) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Writes MRSMAP.RRF entries for a Concept
writeMRSO(Concept) - Method in class gov.nih.nlm.umls.io.OriginalMRFilesConceptOutputStream
Writes MRSO entries for a Concept
writeMRSTY(Concept) - Method in class gov.nih.nlm.umls.io.RichMRFilesConceptOutputStream
Writes MRSTY.RRF entries for a Concept
writeReleaseDatFile(String) - Static method in class gov.nih.nlm.mms.MMSToolkit
Helper method for writing release.dat.
writeReleaseMetadata(ReleaseMetadata) - Method in interface gov.nih.nlm.mms.ConceptOutputStream
Write the ReleaseMetadata to the output stream.
writeReleaseMetadata(ReleaseMetadata) - Method in interface gov.nih.nlm.umls.io.MetathesaurusOutputStream
Write the ReleaseMetadata to the output stream.
writeReleaseMetadata(ReleaseMetadata) - Method in class gov.nih.nlm.umls.io.OriginalMRMetathesaurusOutputStream
Writes an ReleaseMetadata to the appropriate MR metadata files.
writeReleaseMetadata(ReleaseMetadata) - Method in class gov.nih.nlm.umls.io.RichMRMetathesaurusOutputStream
Writes an ReleaseMetadata to the appropriate MR metadata files.

X

XMLEntityEncoder - class gov.nih.nlm.util.XMLEntityEncoder.
Encodes a string with certain characters using XML character entities.
XMLEntityEncoder() - Constructor for class gov.nih.nlm.util.XMLEntityEncoder
 
XTabbedPane - class gov.nih.nlm.swing.XTabbedPane.
Extends JTabbedPane and enables the dragging and dropping of the tabs to reorder them.
XTabbedPane() - Constructor for class gov.nih.nlm.swing.XTabbedPane
 
XTabbedPane(int) - Constructor for class gov.nih.nlm.swing.XTabbedPane
 
XTabbedPane(int, int) - Constructor for class gov.nih.nlm.swing.XTabbedPane
 
xml_ser - Variable in class gov.nih.nlm.mms.browser.ConceptListManager
 

Z

zoom_cursor - Variable in class gov.nih.nlm.util.PrintPreviewAction
 

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